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1.
Mar Drugs ; 21(6)2023 Jun 02.
Article in English | MEDLINE | ID: mdl-37367669

ABSTRACT

Five undescribed pentaketide derivatives, (R)-6,8-dihydroxy-4,5-dimethyl-3-methylidene-3,4-dihydro-1H-2-benzopyran-1-one (1), [(3S,4R)-3,8-dihydroxy-6-methoxy-4,5-dimethyl-1-oxo-3,4-dihydro-1H-isochromen-3-yl]methyl acetate (2), (R)-5, 7-dimethoxy-3-((S)-(1-hydroxyethyl)-3,4-dimethylisobenzofuran-1(3H)-one (4b), (S)-7-hydroxy-3-((S)-1-hydroxyethyl)-5-methoxy-3,4-dimethylisobenzofuran 1(3H)-one (5), and a p-hydroxyphenyl-2-pyridone derivative, avellaneanone (6), were isolated together with the previously reported (R)-3-acetyl-7-hydroxy-5-methoxy-3,4-dimethylisobenzofuran-1(3H)-one (3), (R)-7-hydroxy-3-((S)-1-hydroxyethyl)-5-methoxy-3,4-dimethylisobenzofuran-1(3H)-one (4a) and isosclerone (7), from the ethyl acetate extract of a culture of a marine sponge-derived fungus, Hamigera avellanea KUFA0732. The structures of the undescribed compounds were elucidated using 1D and 2D NMR, as well as high-resolution mass spectral analyses. The absolute configurations of the stereogenic carbons in 1, 4b, 5, and 6 were established by X-ray crystallographic analysis. The absolute configurations of C-3 and C-4 in 2 were determined by ROESY correlations and on the basis of their common biosynthetic origin with 1. The crude fungal extract and the isolated compounds 1, 3, 4b, 5, 6, and 7 were assayed for their growth inhibitory activity against various plant pathogenic fungi viz. Alternaria brassicicola, Bipolaris oryzae, Colletotrichum capsici, C. gloeosporiodes, Curvularia oryzae, Fusarium semitectum, Lasiodiplodia theobromae, Phytophthora palmivora, Pyricularia oryzae, Rhizoctonia oryzae and Sclerotium rolfsii.


Subject(s)
Porifera , Animals , Porifera/microbiology , Coumarins , Molecular Structure
2.
Mar Drugs ; 21(3)2023 Mar 21.
Article in English | MEDLINE | ID: mdl-36976243

ABSTRACT

An undescribed hybrid phenalenone dimer, talaropinophilone (3), an unreported azaphilone, 7-epi-pinazaphilone B (4), an unreported phthalide dimer, talaropinophilide (6), and an undescribed 9R,15S-dihydroxy-ergosta-4,6,8 (14)-tetraen-3-one (7) were isolated together with the previously reported bacillisporins A (1) and B (2), an azaphilone derivative, Sch 1385568 (5), 1-deoxyrubralactone (8), acetylquestinol (9), piniterpenoid D (10) and 3,5-dihydroxy-4-methylphthalaldehydic acid (11) from the ethyl acetate extract of the culture of a marine sponge-derived fungus, Talaromyces pinophilus KUFA 1767. The structures of the undescribed compounds were elucidated by 1D and 2D NMR as well as high-resolution mass spectral analyses. The absolute configuration of C-9' of 1 and 2 was revised to be 9'S using the coupling constant value between C-8' and C-9' and was confirmed by ROESY correlations in the case of 2. The absolute configurations of the stereogenic carbons in 7 and 8 were established by X-ray crystallographic analysis. Compounds 1,2, 4-8, 10 and 11 were tested for antibacterial activity against four reference strains, viz. two Gram-positive (Staphylococcus aureus ATCC 29213, Enterococcus faecalis ATCC 29212) and two Gram-negative (Escherichia coli ATCC 25922, Pseudomonas aeruginosa ATCC 27853), as well as three multidrug-resistant strains, viz. an extended-spectrum ß-lactamase (ESBL)-producing E. coli, a methicillin-resistant S. aureus (MRSA) and a vancomycin-resistant E. faecalis (VRE). However, only 1 and 2 exhibited significant antibacterial activity against both S. aureus ATCC 29213 and MRSA. Moreover, 1 and 2 also significantly inhibited biofilm formation in S. aureus ATCC 29213 at both MIC and 2xMIC concentrations.


Subject(s)
Methicillin-Resistant Staphylococcus aureus , Porifera , Talaromyces , Animals , Staphylococcus aureus , Escherichia coli , Porifera/chemistry , Talaromyces/chemistry , Anti-Bacterial Agents/chemistry , Steroids , Microbial Sensitivity Tests
3.
Mar Drugs ; 20(11)2022 Oct 27.
Article in English | MEDLINE | ID: mdl-36354995

ABSTRACT

An unreported isocoumarin, (3S,4R)-4-hydroxy-6-methoxymellein (2), an undescribed propylpyridinium anthraquinone (4), and an unreported C-glucosyl resorcinol derivative, acetyl carnemycin E (5c), were isolated, together with eight previously reported metabolites including p-hydroxybenzaldehyde (1), 1,3-dimethoxy-8-hydroxy-6-methylanthraquinone (3a), 1,3-dimethoxy-2,8-dihydroxy-6-methylanthraquinone (3b), emodin (3c), 5[(3E,5E)-nona-3,5-dien-1-yl]benzene (5a), carnemycin E (5b), tajixanthone hydrate (6a) and 15-acetyl tajixanthone hydrate (6b), from the ethyl acetate extract of the culture of a marine sponge-derived fungus, Aspergillus stellatus KUFA 2017. The structures of the undescribed compounds were elucidated by 1D and 2D NMR and high resolution mass spectral analyses. In the case of 2, the absolute configurations of the stereogenic carbons were determined by comparison of their calculated and experimental electronic circular dichroism (ECD) spectra. The absolute configurations of the stereogenic carbons in 6a and 6b were also determined, for the first time, by X-ray crystallographic analysis. Compounds 2, 3a, 3b, 4, 5a, 5b, 5c, 6a, and 6b were assayed for antibacterial activity against four reference strains, viz. two Gram-positive (Staphylococcus aureus ATCC 29213, Enterococcus faecalis ATCC 29212) and two Gram-negative (Escherichia coli ATCC 25922, Pseudomonas aeruginosa ATCC 27853), as well as three multidrug-resistant strains. However, only 5a exhibited significant antibacterial activity against both reference and multidrug-resistant strains. Compound 5a also showed antibiofilm activity against both reference strains of Gram-positive bacteria.


Subject(s)
Isocoumarins , Porifera , Animals , Isocoumarins/pharmacology , Isocoumarins/chemistry , Porifera/chemistry , Fungi/chemistry , Anthraquinones/pharmacology , Anthraquinones/chemistry , Anti-Bacterial Agents/chemistry , Resorcinols , Microbial Sensitivity Tests
4.
Mar Drugs ; 19(8)2021 Aug 11.
Article in English | MEDLINE | ID: mdl-34436296

ABSTRACT

Previously unreported anthraquinone, acetylpenipurdin A (4), biphenyl ether, neospinosic acid (6), dibenzodioxepinone, and spinolactone (7) were isolated, together with (R)-6-hydroxymellein (1), penipurdin A (2), acetylquestinol (3), tenellic acid C (5), and vermixocin A (8) from the culture of a marine sponge-associated fungus Neosartorya spinosa KUFA1047. The structures of the previously unreported compounds were established based on an extensive analysis of 1D and 2D NMR spectra as well as HRMS data. The absolute configurations of the stereogenic centers of 5 and 7 were established unambiguously by comparing their calculated and experimental electronic circular dichroism (ECD) spectra. Compounds 2 and 5-8 were tested for their in vitro acetylcholinesterase and tyrosinase inhibitory activities as well as their antibacterial activity against Gram-positive and Gram-negative reference, and multidrug-resistant strains isolated from the environment. The tested compounds were also evaluated for their capacity to inhibit biofilm formation in the reference strains.


Subject(s)
Anthraquinones/pharmacology , Anti-Bacterial Agents/pharmacology , Fungi/chemistry , Phenyl Ethers/pharmacology , Porifera/microbiology , Acetylcholinesterase/drug effects , Animals , Aquatic Organisms , Gram-Negative Bacteria/drug effects , Gram-Positive Bacteria/drug effects , Humans , Microbial Sensitivity Tests , Phytotherapy
5.
Phytochemistry ; 185: 112709, 2021 May.
Article in English | MEDLINE | ID: mdl-33636575

ABSTRACT

Four undescribed prenylated phenylbutyrolactones, aspulvinones R, S, T and U, were isolated together with the previously reported aspulvinones A, B', H and 4-hydroxy-3,5-bis(3-methylbut-2-en-1-yl)benzaldehyde, from cultures of the marine sponge-derived fungus Aspergillus flavipes KUFA1152. The structures of the undescribed compounds were established on the basis of extensive analysis of 1D and 2D NMR and HRMS spectra. In the case of aspulvinone T, the absolute configuration of its stereogenic carbon was established by comparison of the experimental and calculated electronic circular dichroism (ECD) spectra. The structure of the previously reported compounds were elucidated by 1D and 2D NMR analysis as well as comparison of their 1H or/and 13C NMR data with those reported in the literature. Aspulvinones B', H, R, S, T and a mixture of aspulvinones A and U exhibited antibacterial activity against reference strains and multidrug-resistant isolates from the environment as well as capacity to inhibit biofilm formation in the reference strains. However, none of the tested compounds showed potential synergy with clinically relevant antibiotics on multidrug-resistant isolates.


Subject(s)
Porifera , Animals , Anti-Bacterial Agents/pharmacology , Aspergillus , Fungi , Molecular Structure
6.
Phytochemistry ; 181: 112575, 2021 Jan.
Article in English | MEDLINE | ID: mdl-33166747

ABSTRACT

Two undescribed viomellein derivatives, xanthoelegansin and spiroxanthoelegansin, were isolated together with clavatol, sitosteanone, vioxanthin, xanthomegnin, viomellein, rubrosulphin, rubrosulphin diacetate, viopurpurin , ochratoxin A, ochratoxin A methyl ester, ochratoxin B and ochratoxin ß, from cultures of the marine sponge-associated fungus Aspergillus elegans KUFA0015. The structures of the undescribed compounds were established based on an extensive analysis of 1D and 2D NMR spectra as well as HRMS data. The structure of xanthoelegansin and the absolute configuration of its stereogenic carbons were confirmed by X-ray analysis. The change in conformation of xanthoelegansin was interpreted using quantum mechanical theoretical calculation data in combination with the observation of the change of the proton signals of the 1,3-dioxepine ring in 1HNMR spectra at varying temperatures. The mechanisms of the formation of xanthoelegansin and spiroxanthoelegansin from viomellein were proposed. Clavatol, sitosteanone, vioxanthin, xanthomegnin, viomellein, xanthoelegansin, rubrosulphin, rubrosulphin diacetate, ochratoxin A, ochratoxin A methyl ester, ochratoxin B and ochratoxin ß were assayed for their antibacterial activity against reference strains and multidrug-resistant isolates from the environment. The tested compounds were also evaluated for their capacity to inhibit biofilm formation in the reference strains.


Subject(s)
Anti-Bacterial Agents , Porifera , Animals , Anti-Bacterial Agents/pharmacology , Aspergillus , Benzopyrans , Indoles , Naphthoquinones , Nitro Compounds
7.
Anal Chem ; 91(15): 9516-9521, 2019 08 06.
Article in English | MEDLINE | ID: mdl-31259536

ABSTRACT

The growing significance of membrane proteins inspires continuous development and improvement of methods for robust membrane proteomics. Here, we developed a very simple and efficient method for membrane protein digestion using an ionic detergent, sodium dodecyl sulfate (SDS), at high temperature, conditions where trypsin is normally inactivated. Our results suggest that trypsin can be stabilized by a combination of calcium ions and sodium chloride, which enables protein digestion at elevated temperature in the presence of strong ionic detergents such as SDS. Finding the conditions for stabilization of trypsin offers novel opportunities for the application of detergents for the investigation of membrane proteins.


Subject(s)
Calcium/chemistry , Cell Membrane/chemistry , Listeria monocytogenes/chemistry , Ovalbumin/chemistry , Sodium Dodecyl Sulfate/chemistry , Electrophoresis, Polyacrylamide Gel , Hot Temperature , Mass Spectrometry , Reproducibility of Results
8.
Mar Drugs ; 17(6)2019 Jun 25.
Article in English | MEDLINE | ID: mdl-31242631

ABSTRACT

Previously unreported meroterpene, acremine S (1), and benzopyran derivative, acremine T (2), were isolated, together with lumichrome (3), ergosterol (4) and ergosterol 5,8-endoperoxide, from cultures of the marine sponge-associated fungus Acremonium persicinum KUF1007. The structure of the previously unreported compounds was established based on an extensive analysis of 1D and 2D NMR spectra as well as HRMS data. The absolute configurations of the stereogenic centers of 1 were established, unambiguously, based on NOESY correlations and comparison of calculated and experimental electronic circular dichroism (ECD) spectra. Compounds 1-3 were tested for their in vitro acetylcholinesterase and butyrylcholinesterase inhibitory activities.


Subject(s)
Acremonium/chemistry , Benzofurans/chemistry , Cholinesterase Inhibitors/chemistry , Porifera/microbiology , Terpenes/chemistry , Animals , Circular Dichroism/methods , Ergosterol/chemistry , Flavins/chemistry , Magnetic Resonance Spectroscopy/methods , Microbial Sensitivity Tests/methods
9.
Proc Natl Acad Sci U S A ; 116(21): 10463-10472, 2019 05 21.
Article in English | MEDLINE | ID: mdl-31036632

ABSTRACT

Paget's disease of bone (PDB) is a chronic skeletal disorder that can affect one or several bones in individuals older than 55 y of age. PDB-like changes have been reported in archaeological remains as old as Roman, although accurate diagnosis and natural history of the disease is lacking. Six skeletons from a collection of 130 excavated at Norton Priory in the North West of England, which dates to medieval times, show atypical and extensive pathological changes resembling contemporary PDB affecting as many as 75% of individual skeletons. Disease prevalence in the remaining collection is high, at least 16% of adults, with age at death estimations as low as 35 y. Despite these atypical features, paleoproteomic analysis identified sequestosome 1 (SQSTM1) or p62, a protein central to the pathological milieu of PDB, as one of the few noncollagenous human sequences preserved in skeletal samples. Targeted proteomic analysis detected >60% of the ancient p62 primary sequence, with Western blotting indicating p62 abnormalities, including in dentition. Direct sequencing of ancient DNA excluded contemporary PDB-associated SQSTM1 mutations. Our observations indicate that the ancient p62 protein is likely modified within its C-terminal ubiquitin-associated domain. Ancient miRNAs were remarkably preserved in an osteosarcoma from a skeleton with extensive disease, with miR-16 expression consistent with that reported in contemporary PDB-associated bone tumors. Our work displays the use of proteomics to inform diagnosis of ancient diseases such as atypical PDB, which has unusual features presumably potentiated by yet-unidentified environmental or genetic factors.


Subject(s)
Bone and Bones/metabolism , Osteitis Deformans/metabolism , Proteome , Sequestosome-1 Protein/metabolism , Bone and Bones/pathology , History, Medieval , Humans , MicroRNAs/metabolism , Osteitis Deformans/complications , Osteitis Deformans/pathology , Osteosarcoma/etiology , Osteosarcoma/metabolism , Paleopathology , Sequence Analysis, DNA , Sequestosome-1 Protein/chemistry
10.
Proteomics ; 16(14): 1961-9, 2016 07.
Article in English | MEDLINE | ID: mdl-27037516

ABSTRACT

Unanchored polyubiquitin chains are emerging as important regulators of cellular physiology with diverse roles paralleling those of substrate-conjugated polyubiquitin. However tools able to discriminate unanchored polyubiquitin chains of different isopeptide linkages have not been reported. We describe the design of a linker-optimized ubiquitin-binding domain hybrid (t-UBD) containing two UBDs, a ZnF-UBP domain in tandem with a linkage-selective UBA domain, which exploits avidity effects to afford selective recognition of unanchored Lys48-linked polyubiquitin chains. Utilizing native MS to quantitatively probe binding affinities we confirm cooperative binding of the UBDs within the synthetic protein, and desired binding specificity for Lys48-linked ubiquitin dimers. Furthermore, MS/MS analyses indicate that the t-UBD, when applied as an affinity enrichment reagent, can be used to favor the purification of endogenous unanchored Lys48-linked polyubiquitin chains from mammalian cell extracts. Our study indicates that strategies for the rational design and engineering of polyubiquitin chain-selective binding in nonbiological polymers are possible, paving the way for the generation of reagents to probe unanchored polyubiquitin chains of different linkages and more broadly the 'ubiquitome'. All MS data have been deposited in the ProteomeXchange with identifier PXD004059 (http://proteomecentral.proteomexchange.org/dataset/PXD004059).


Subject(s)
Biological Assay/standards , Lysine/metabolism , Polyubiquitin/isolation & purification , Recombinant Fusion Proteins/metabolism , Binding Sites , Complex Mixtures/chemistry , Gene Expression , HEK293 Cells , Humans , Kinetics , Lysine/chemistry , Models, Molecular , Polyubiquitin/chemistry , Protein Binding , Protein Domains , Protein Engineering , Protein Multimerization , Recombinant Fusion Proteins/genetics , Sensitivity and Specificity , Tandem Mass Spectrometry , Ubiquitination
11.
Nat Commun ; 6: 7285, 2015 Jul 07.
Article in English | MEDLINE | ID: mdl-26149123

ABSTRACT

Our understanding of the key phosphorylation-dependent signalling pathways in the human malaria parasite, Plasmodium falciparum, remains rudimentary. Here we address this issue for the essential cGMP-dependent protein kinase, PfPKG. By employing chemical and genetic tools in combination with quantitative global phosphoproteomics, we identify the phosphorylation sites on 69 proteins that are direct or indirect cellular targets for PfPKG. These PfPKG targets include proteins involved in cell signalling, proteolysis, gene regulation, protein export and ion and protein transport, indicating that cGMP/PfPKG acts as a signalling hub that plays a central role in a number of core parasite processes. We also show that PfPKG activity is required for parasite invasion. This correlates with the finding that the calcium-dependent protein kinase, PfCDPK1, is phosphorylated by PfPKG, as are components of the actomyosin complex, providing mechanistic insight into the essential role of PfPKG in parasite egress and invasion.


Subject(s)
Cyclic GMP-Dependent Protein Kinases/metabolism , Phosphoproteins/metabolism , Plasmodium falciparum/enzymology , Proteomics/methods , Calcium Signaling/physiology , Cyclic GMP-Dependent Protein Kinases/genetics , Erythrocytes/physiology , Gene Expression Regulation, Enzymologic , Phosphoproteins/genetics , Plasmodium falciparum/genetics , Plasmodium falciparum/metabolism , Protozoan Proteins/genetics , Protozoan Proteins/metabolism , Schizonts/physiology
12.
J Neurochem ; 123(5): 725-35, 2012 Dec.
Article in English | MEDLINE | ID: mdl-22971236

ABSTRACT

Recombinant FlagHis(6) tagged Human P2X1 receptors expressed in HEK293 cells were purified, digested with trypsin and analysed by mass spectroscopy (96% coverage following de-glycosylation and reduction). The receptor was basally phosphorylated at residues S387, S388 and T389 in the carboxyl terminus, a triple alanine mutant of these residues had a modest ~ 25% increase in current amplitude and recovery from desensitization. Chemical modification showed that intracellular lysine residues close to the transmembrane domains and the membrane stabilization motif are accessible to the aqueous environment. The membrane-impermeant cross-linking reagent 3,3'-Dithiobis (sulfosuccinimidylpropionate) (DTSSP) reduced agonist binding and P2X1 receptor currents by > 90%, and modified lysine residues were identified by mass spectroscopy. Mutation to remove reactive lysine residues around the ATP-binding pocket had no effect on inhibtion of agonist evoked currents following DTSSP. However, agonist evoked currents were ~ 10-fold higher than for wild type following DTSSP treatment for mutants K199R, K221R and K199R-K221R. These mutations remove reactive residues distant from the agonist binding pocket that are close enough to cross-link adjacent subunits. These results suggest that conformational change in the P2X1 receptor is required for co-ordination of ATP action.


Subject(s)
Receptors, Purinergic P2X1/chemistry , Receptors, Purinergic P2X1/metabolism , Signal Transduction/physiology , Adenosine Triphosphate/metabolism , Amino Acid Sequence , Animals , Blotting, Western , Chromatography, Liquid , Electrophoresis, Polyacrylamide Gel , Evoked Potentials/physiology , HEK293 Cells , Humans , Models, Molecular , Molecular Sequence Data , Patch-Clamp Techniques , Protein Structure, Quaternary , Tandem Mass Spectrometry , Xenopus laevis
13.
Nat Commun ; 2: 565, 2011 Nov 29.
Article in English | MEDLINE | ID: mdl-22127061

ABSTRACT

The role of protein phosphorylation in the life cycle of malaria parasites is slowly emerging. Here we combine global phospho-proteomic analysis with kinome-wide reverse genetics to assess the importance of protein phosphorylation in Plasmodium falciparum asexual proliferation. We identify 1177 phosphorylation sites on 650 parasite proteins that are involved in a wide range of general cellular activities such as DNA synthesis, transcription and metabolism as well as key parasite processes such as invasion and cyto-adherence. Several parasite protein kinases are themselves phosphorylated on putative regulatory residues, including tyrosines in the activation loop of PfGSK3 and PfCLK3; we show that phosphorylation of PfCLK3 Y526 is essential for full kinase activity. A kinome-wide reverse genetics strategy identified 36 parasite kinases as likely essential for erythrocytic schizogony. These studies not only reveal processes that are regulated by protein phosphorylation, but also define potential anti-malarial drug targets within the parasite kinome.


Subject(s)
Malaria, Falciparum/metabolism , Plasmodium falciparum/metabolism , Plasmodium falciparum/pathogenicity , Proteomics/methods , Protozoan Proteins/metabolism , Animals , Humans , Phosphorylation
14.
J Biol Chem ; 286(13): 11506-18, 2011 Apr 01.
Article in English | MEDLINE | ID: mdl-21177246

ABSTRACT

G-protein-coupled receptors are hyper-phosphorylated in a process that controls receptor coupling to downstream signaling pathways. The pattern of receptor phosphorylation has been proposed to generate a "bar code" that can be varied in a tissue-specific manner to direct physiologically relevant receptor signaling. If such a mechanism existed, receptors would be expected to be phosphorylated in a cell/tissue-specific manner. Using tryptic phosphopeptide maps, mass spectrometry, and phospho-specific antibodies, it was determined here that the prototypical G(q/11)-coupled M(3)-muscarinic receptor was indeed differentially phosphorylated in various cell and tissue types supporting a role for differential receptor phosphorylation in directing tissue-specific signaling. Furthermore, the phosphorylation profile of the M(3)-muscarinic receptor was also dependent on the stimulus. Full and partial agonists to the M(3)-muscarinic receptor were observed to direct phosphorylation preferentially to specific sites. This hitherto unappreciated property of ligands raises the possibility that one mechanism underlying ligand bias/functional selectivity, a process where ligands direct receptors to preferred signaling pathways, may be centered on the capacity of ligands to promote receptor phosphorylation at specific sites.


Subject(s)
GTP-Binding Protein alpha Subunits, Gq-G11/metabolism , Receptor, Muscarinic M3/metabolism , Signal Transduction/physiology , Animals , CHO Cells , Cricetinae , Cricetulus , GTP-Binding Protein alpha Subunits, Gq-G11/genetics , Mice , Phosphorylation/physiology , Receptor, Muscarinic M3/agonists , Receptor, Muscarinic M3/genetics
15.
Proc Natl Acad Sci U S A ; 107(20): 9440-5, 2010 May 18.
Article in English | MEDLINE | ID: mdl-20439723

ABSTRACT

Degeneration of the cholinergic system is considered to be the underlying pathology that results in the cognitive deficit in Alzheimer's disease. This pathology is thought to be linked to a loss of signaling through the cholinergic M(1)-muscarinic receptor subtype. However, recent studies have cast doubt on whether this is the primary receptor mediating cholinergic-hippocampal learning and memory. The current study offers an alternative mechanism involving the M(3)-muscarinic receptor that is expressed in numerous brain regions including the hippocampus. We demonstrate here that M(3)-muscarinic receptor knockout mice show a deficit in fear conditioning learning and memory. The mechanism used by the M(3)-muscarinic receptor in this process involves receptor phosphorylation because a knockin mouse strain expressing a phosphorylation-deficient receptor mutant also shows a deficit in fear conditioning. Consistent with a role for receptor phosphorylation, we demonstrate that the M(3)-muscarinic receptor is phosphorylated in the hippocampus following agonist treatment and following fear conditioning training. Importantly, the phosphorylation-deficient M(3)-muscarinic receptor was coupled normally to G(q/11)-signaling but was uncoupled from phosphorylation-dependent processes such as receptor internalization and arrestin recruitment. It can, therefore, be concluded that M(3)-muscarinic receptor-dependent learning and memory depends, at least in part, on receptor phosphorylation/arrestin signaling. This study opens the potential for biased M(3)-muscarinic receptor ligands that direct phosphorylation/arrestin-dependent (non-G protein) signaling as being beneficial in cognitive disorders.


Subject(s)
Alzheimer Disease/physiopathology , Fear , Hippocampus/metabolism , Learning/physiology , Memory/physiology , Receptor, Muscarinic M3/physiology , Alzheimer Disease/metabolism , Animals , Arrestin/metabolism , Conditioning, Psychological , GTP-Binding Protein alpha Subunits, Gq-G11/metabolism , Immunohistochemistry , Immunoprecipitation , Mass Spectrometry , Maze Learning , Mice , Mice, Knockout , Phosphorylation , Receptor, Muscarinic M3/genetics , Receptor, Muscarinic M3/metabolism
16.
J Med Chem ; 52(24): 7966-9, 2009 Dec 24.
Article in English | MEDLINE | ID: mdl-19950927

ABSTRACT

Conformationally constrained mimetics of the laminin cell-adhesion site, YIGSR, are described. The site is the natural antagonist of the integrin-associated laminin receptor 1 (LAMR1) known to mediate metastatic tumor adhesion. The attachment of selected metastatic cell lines toward the constrained antagonists has been assessed. Observed differential responses prompted by folding preferences of the mimetics revealed stronger attachment activities for turnlike structures. The results permit the conformational design of antimetastatic disintegrins.


Subject(s)
Antineoplastic Agents/chemistry , Disintegrins/chemistry , Laminin/chemistry , Oligopeptides/chemistry , Peptides, Cyclic/chemistry , Animals , Antineoplastic Agents/pharmacology , Biomimetic Materials/chemistry , Biomimetic Materials/pharmacology , Cell Line, Tumor , Fibrosarcoma/drug therapy , Fibrosarcoma/pathology , HeLa Cells , Humans , Melanoma, Experimental/drug therapy , Melanoma, Experimental/pathology , Mice , Oligopeptides/pharmacology , Peptides, Cyclic/pharmacology , Protein Conformation , Receptors, Laminin/antagonists & inhibitors , Ribosomal Proteins
17.
J Biol Chem ; 284(25): 17147-17156, 2009 Jun 19.
Article in English | MEDLINE | ID: mdl-19332541

ABSTRACT

Changes in synaptic strength mediated by ionotropic glutamate N-methyl-D-asparate (NMDA) receptors is generally considered to be the molecular mechanism underlying memory and learning. NMDA receptors themselves are subject to regulation through signaling pathways that are activated by G-protein-coupled receptors (GPCRs). In this study we investigate the ability of NMDA receptors to regulate the signaling of GPCRs by focusing on the G(q/11)-coupled M(3)-muscarinic receptor expressed endogenously in mouse cerebellar granule neurons. We show that NMDA receptor activation results in the phosphorylation and desensitization of M(3)-muscarinic receptors through a mechanism dependent on NMDA-mediated calcium influx and the activity of calcium-calmodulin-dependent protein kinase II. Our study reveals a complex pattern of regulation where GPCRs (M(3)-muscarinic) and NMDA receptors can feedback on each other in a process that is likely to influence the threshold value of signaling networks involved in synaptic plasticity.


Subject(s)
Cerebellum/metabolism , Receptor, Muscarinic M3/metabolism , Receptors, N-Methyl-D-Aspartate/metabolism , Amino Acid Sequence , Animals , Calcium Signaling , Calcium-Calmodulin-Dependent Protein Kinase Type 2/antagonists & inhibitors , Calcium-Calmodulin-Dependent Protein Kinase Type 2/genetics , Calcium-Calmodulin-Dependent Protein Kinase Type 2/metabolism , Cells, Cultured , Cerebellum/cytology , Feedback, Physiological , Mice , Mice, Knockout , Molecular Sequence Data , N-Methylaspartate/pharmacology , Neuronal Plasticity , Neurons/drug effects , Neurons/metabolism , Phosphatidylinositols/metabolism , Phosphorylation , Receptor, Muscarinic M3/chemistry , Receptor, Muscarinic M3/deficiency , Receptor, Muscarinic M3/genetics , Recombinant Fusion Proteins/chemistry , Recombinant Fusion Proteins/genetics , Recombinant Fusion Proteins/metabolism , Signal Transduction
18.
Biochemistry ; 48(22): 4738-46, 2009 Jun 09.
Article in English | MEDLINE | ID: mdl-19309109

ABSTRACT

The heme peroxidase and heme oxygenase enzymes share a common heme prosthetic group but catalyze fundamentally different reactions, the first being H(2)O(2)-dependent oxidation of substrate using an oxidized Compound I intermediate, and the second O(2)-dependent degradation of heme. It has been proposed that these enzymes utilize a common reaction intermediate, a ferric hydroperoxide species, that sits at a crossroads in the mechanism and beyond which there are two mutually exclusive mechanistic pathways. Here, we present evidence to support this proposal in a heme peroxidase. Hence, we describe kinetic data for a variant of ascorbate peroxidase (W41A) which reacts slowly with tert-butyl hydroperoxide and does not form the usual peroxidase Compound I intermediate; instead, structural data show that a product is formed in which the heme has been cleaved at the alpha-meso position, analogous to the heme oxygenase mechanism. We interpret this to mean that the Compound I (peroxidase) pathway is shut down, so that instead the reaction intermediate diverts through the alternative (heme oxygenase) route. A mechanism for formation of the product is proposed and discussed in the light of what is known about the heme oxygenase reaction mechanism.


Subject(s)
Heme Oxygenase (Decyclizing)/chemistry , Heme Oxygenase (Decyclizing)/metabolism , Peroxidases/chemistry , Peroxidases/metabolism , Ascorbate Peroxidases , Aspartic Acid/genetics , Crystallization , Crystallography, X-Ray , Genetic Variation , Isoenzymes/chemistry , Isoenzymes/genetics , Isoenzymes/metabolism , Peroxidases/genetics , Plant Proteins/chemistry , Plant Proteins/genetics , Plant Proteins/metabolism , Glycine max/enzymology , Glycine max/genetics , Tryptophan/genetics , tert-Butylhydroperoxide/chemistry , tert-Butylhydroperoxide/metabolism
19.
Biochemistry ; 48(16): 3593-9, 2009 Apr 28.
Article in English | MEDLINE | ID: mdl-19249872

ABSTRACT

Ascorbate peroxidase (APX), cytochrome c peroxidase (CcP), and the catalase-peroxidases (KatG) share very similar active site structures and are distinguished from other peroxidases by the presence of a distal tryptophan residue. In KatG, this distal tryptophan forms a covalent link to an adjacent tyrosine residue, which in turn links to a methionine residue. We have previously shown [ Pipirou, Z. et al. ( 2007 ) Biochemistry 46 , 2174 - 2180 ] that reaction of APX with peroxide leads, over long time scales, to formation of a covalent link with the distal tryptophan (Trp41) in a mechanism that proceeds through initial formation of a compound I species bearing a porphyrin pi-cation radical followed by radical formation on Trp41, as implicated in the KatG enzymes. Formation of such a covalent link in CcP has never been reported, and we proposed that this could be because compound I in CcP uses Trp191 instead of a porphyrin pi-cation radical. To test this, we have examined the reactivity of the W191F variant of CcP with H(2)O(2), in which formation of a porphyrin pi-cation radical occurs. We show, using electronic spectroscopy, HPLC, and mass spectroscopy, that in W191F partial formation of a covalent link from Trp51 to the heme is observed, as in APX. Radical formation on Trp51, as seen for KatG and APX, is implicated; this is supported by QM/MM calculations. Collectively, the data show that all three members of the class I heme peroxidases can support radical formation on the distal tryptophan and that the reactivity of this radical can be controlled either by the protein structure or by the nature of the compound I intermediate.


Subject(s)
Cytochrome-c Peroxidase/chemistry , Heme/chemistry , Peroxides/chemistry , Tryptophan/chemistry , Chromatography, High Pressure Liquid , Cytochrome-c Peroxidase/metabolism , Molecular Structure , Oxidants/chemistry , Spectrometry, Mass, Matrix-Assisted Laser Desorption-Ionization
20.
Biochemistry ; 46(46): 13269-78, 2007 Nov 20.
Article in English | MEDLINE | ID: mdl-17958400

ABSTRACT

We have previously shown that introduction of an engineered Met160 residue in ascorbate peroxidase (S160M variant) leads to the formation of a covalent link between Met160 and the heme vinyl group [Metcalfe, C. L., et al. (2004) J. Am. Chem. Soc. 126, 16242-16248]. In this work, we have used electronic spectroscopy, HPLC, and mass spectrometry to show that the introduction of a tyrosine residue at the same position (S160Y variant) leads, similarly, to the formation of a heme-tyrosine covalent link in an autocatalytic reaction that also leads to formation of a second covalent link from the heme to Trp41 [Pipirou, Z., et al. (2007) Biochemistry 46, 2174-2180]. Stopped-flow and EPR data implicate the involvement of a tyrosyl radical in the reaction mechanism. The results indicate that the heme can support the formation of different types of covalent links under appropriate conditions. The generality of this idea is discussed in the context of other heme enzymes.


Subject(s)
Heme/chemistry , Peroxidases/chemistry , Tryptophan/chemistry , Tyrosine/chemistry , Amino Acid Sequence , Ascorbate Peroxidases , Catalysis , Chromatography, High Pressure Liquid , Electron Spin Resonance Spectroscopy , Heme/metabolism , Hydrogen Peroxide/metabolism , Mass Spectrometry , Models, Molecular , Molecular Sequence Data , Oxidation-Reduction , Peroxidases/metabolism , Recombinant Proteins/chemistry , Recombinant Proteins/metabolism , Glycine max/enzymology , Tryptophan/metabolism , Tyrosine/metabolism
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