Unlocking the Charge-storage Potential of a Phenanthraquinone-based Two-dimensional Covalent Organic Framework (2D COF).

The high surface area, open pore-structure and atomic-level organization inherent in many covalent organic frameworks (COFs) make them an attractive polymer platform for developing functional materials. Herein, a chemically robust 2D COF (TpOMe-DAPQ COF) containing phenanthraquinone moieties was prepared by condensing 2,4,6-trimethoxy-1,3,5-benzenetricarbaldehyde (TpOMe) and 2,7-diamino-9,10-phenanthraquinone (DAPQ) using the convenient mechanochemical method. The poor charge-storage capacity of the pristine TpOMe-DAPQ COF was substantially improved by first investigating its redox-site accessibility (RSA) using different conductivity-enhancement methods, and then optimizing the amount of EDOT needed to perform an in-situ polymerization. The resulting composite (0.4EDOT@TpOMe-DAPQ) was characterized and its enhanced charge-storage capabilities enabled it to be used as an anode material in an aqueous Mn beaker-cell battery capable of delivering 0.76 V. This work outlines the rational design approach used to develop a functional charge-storage material utilizing a COF-based polymerization platform.

Unlocking single molecule magnetism: a supramolecular strategy for isolating neutral MnIII salen-type dimer in crystalline environments.

In [Mn(5-MeOsalen)(Cl)]2(dibenzo[24]crown-8), dibenzo[24]crown-8 formed a supramolecule via multi-point interactions with the [Mn(5-MeOsalen)(Cl)] dimer. The dimer was magnetically isolated with ST = 4 and weak interdimer magnetic interactions. The crystal exhibited single-molecule magnet behaviour with an anisotropic barrier of 26(1) K, which is the highest among the Mn-salen series reported to date.

Correction: Post-synthetic molecular modifications based on Schiff base condensation reactions for designing functional paddlewheel diruthenium(II,II) complexes.

Correction for 'Post-synthetic molecular modifications based on Schiff base condensation reactions for designing functional paddlewheel diruthenium(II,II) complexes' by Chisa Itoh et al., Dalton Trans., 2024, 53, 444-448.

Post-synthetic molecular modifications based on Schiff base condensation reactions for designing functional paddlewheel diruthenium(II,II) complexes.

A new synthetic route for constructing functional paddlewheel diruthenium(II,II) complexes ([RuII,II2]) was developed by utilizing Schiff base condensation reactions of formyl-substituted benzoate-bridged [RuII,II2] complexes with various aromatic monoamines under mild conditions. Cyclic voltammetry and DFT calculations revealed that the attached Schiff base groups significantly affected the electronic states of the resulting [RuII,II2] complexes.

CO2-Sensitive Porous Magnet: Antiferromagnet Creation from a Paramagnetic Charge-Transfer Layered Metal-Organic Framework.

Porous magnets that undergo a magnetic phase transition in response to gaseous adsorbates are desirable for the development of sustainable sensing and memory devices. Familiar gases such as O2 and CO2 are one class of target adsorbates because of their close association with life sciences and environmental issues; however, it is not easy to develop magnetic devices that respond to these ubiquitous gases. To date, only three examples of gas-responsive magnetic phase transitions have been demonstrated: (i) from a ferrimagnet to an antiferromagnet, (ii) its vice versa (i.e., change of magnetic phase), and (iii) from a ferrimagnet to a paramagnet (i.e., erasure of the magnetic phase). However, the creation of a magnet, meaning the change from a nonmagnet to a magnet by O2 or CO2 gas adsorption and magnetic switching by this phenomenon have not yet been explored. Herein, we report a CO2-induced antiferromagnet modified from a paramagnetic charge-flexible layered compound, [{Ru2(2,4-F2PhCO2)4}2TCNQ(OEt)2] (1; 2,4-F2PhCO2- = 2,4-difluorobenzoate; TCNQ(OEt)2 = 2,5-diethoxy-7,7,8,8-tetracyanoquinodimethane), where three molar equivalents of CO2 was accommodated at a CO2 pressure of 100 kPa. The magnetic change originates from charge fluctuation due to the transfer of electrons moving from the electron-donor to the electron-acceptor unit or vice versa, resulting in a change in the electron distribution induced by CO2 adsorption/desorption in the donor-acceptor-type charge transfer framework. Owing to the reversible electronic state change upon CO2 adsorption/desorption, these magnetic phases are switched, accompanied by modification of the electrical conductivity, which is boosted by the CO2 accommodation. This is the first example of the creation of a CO2-responsive magnet, which is promising for novel molecular multifunctional devices.

Densely Packed CO2 Aids Charge, Spin, and Lattice Ordering Partially Fluctuated in a Porous Metal-Organic Framework Magnet.

Partial charge fluctuations in the charge-ordered state of a material, often triggered by structural disorders and/or defects, can significantly alter its physical characteristics, such as magnetic long-range ordering. However, it is difficult to post-chemically fix such accidental partial fluctuations to reconstruct a uniform charge-ordered state. Herein, we report CO2 -aided charge ordering demonstrated in a CO2 -post-captured layered magnet, [{Ru2 (o-ClPhCO2 )4 }2 {TCNQ(OMe)2 }] ⋅ CO2 (1⊃CO2 ; o-ClPhCO2 - =ortho-chlorobenzoate; TNCQ(OMe)2 =2,5-dimethoxy-7,7,8,8-tetracyanoquinodimethane). Pristine porous layered magnet 1 had a partially charge-fluctuated ordered state, which provided ferrimagnetic ordering at TC =65 K. Upon loading CO2 , 1 adsorbed one mole of CO2 , forming 1⊃CO2 , and raising TC to 100 K. This was because of the vanishing charge fluctuations without significantly changing the framework structure. This research illustrates the post-accessible host-guest chemistry delicately combined with charge, spin, and lattice ordering in a spongy magnet. Furthermore, it highlights how this innovative approach opens up new possibilities for technology and nanoscale magnetism manipulation.

Guest-induced pore breathing controls the spin state in a cyanido-bridged framework.

Iron(ii) spin cross-over (SCO) compounds combine a thermally driven transition from the diamagnetic low-spin (LS) state to the paramagnetic high-spin (HS) state with a distinct change in the crystal lattice volume. Inversely, if the crystal lattice volume was modulated post-synthetically, the spin state of the compound could be tunable, resulting in the inverse effect for SCO. Herein, we demonstrate such a spin-state tuning in a breathing cyanido-bridged porous coordination polymer (PCP), where the volume change resulting from guest-induced gate-opening and -closing directly affects its spin state. We report the synthesis of a three-dimensional coordination framework {[FeII(4-CNpy)4]2[WIV(CN)8]·4H2O}n (1·4H2O; 4-CNpy = 4-cyanopyridine), which demonstrates a SCO phenomenon characterized by strong elastic frustration. This leads to a 48 K wide hysteresis loop above 140 K, but below this temperature results in a very gradual and incomplete SCO transition. 1·4H2O was activated under mild conditions, producing the nonporous {[FeII(4-CNpy)4]2[WIV(CN)8]}n (1) via a single-crystal-to-single-crystal process involving a 7.3% volume decrease, which shows complete and nonhysteretic SCO at T1/2 = 93 K. The low-temperature photoswitching behavior in 1 and 1·4H2O manifested the characteristic elasticity of the frameworks; 1 can be quantitatively converted into a metastable HS state after 638 nm light irradiation, while the photoactivation of 1·4H2O is only partial. Furthermore, nonporous 1 adsorbed CO2 molecules in a gated process, leading to {[FeII(4-CNpy)4]2[WIV(CN)8]·4CO2}n (1·4CO2), which resulted in a 15% volume increase and stabilization of the HS state in the whole temperature range down to 2 K. The demonstrated post-synthetic guest-exchange employing common gases is an efficient approach for tuning the spin state in breathing SCO-PCPs.

Effects of LPS from Rhodobacter sphaeroides, a Purple Non-Sulfur Bacterium (PNSB), on the Gene Expression of Rice Root.

The effects of lipopolysaccharide (LPS) from Rhodobacter sphaeroides, a purple non-sulfur bacterium (PNSB), on the gene expression of the root of rice (Oryza sativa) were investigated by next generation sequencing (NGS) RNA-seq analysis. The rice seeds were germinated on agar plates containing 10 pg/mL of LPS from Rhodobacter sphaeroides NBRC 12203 (type culture). Three days after germination, RNA samples were extracted from the roots and analyzed by RNA-seq. The effects of dead (killed) PNSB cells of R. sphaeroides NBRC 12203T at the concentration of 101 cfu/mL (ca. 50 pg cell dry weight/mL) were also examined. Clean reads of NGS were mapped to rice genome (number of transcript ID: 44785), and differentially expressed genes were analyzed by DEGs. As a result of DEG analysis, 300 and 128 genes, and 86 and 8 genes were significantly up- and down-regulated by LPS and dead cells of PNSB, respectively. The plot of logFC (fold change) values of the up-regulated genes of LPS and PNSB dead cells showed a significant positive relationship (r2 = 0.6333, p < 0.0001), indicating that most of the effects of dead cell were attributed to those of LPS. Many genes related to tolerance against biotic (fungal and bacterial pathogens) and abiotic (cold, drought, and high salinity) stresses were up-regulated, and the most strikingly up-regulated genes were those involved in the jasmonate signaling pathway, and the genes of chalcone synthase isozymes, indicating that PNSB induced defense response against biotic and abiotic stresses via the jasmonate signaling pathway, despite the non-pathogenicity of PNSB.

Recent progress in the use of purple non-sulfur bacteria as probiotics in aquaculture.

The use of probiotics in aquaculture is widely recognized as an ecological and cost-effective approach to raising healthy, pathogen-tolerant aquatic animals, including fish and shrimp. In particular for shrimp, probiotics are viewed as a promising countermeasure to the recent severe damage to the shrimp industry by bacterial and viral pathogens. Purple non-sulfur bacteria (PNSB) are Gram-negative, non-pathogenic bacteria with wide application potential in agriculture, wastewater treatment, and bioenergy/biomaterials production. In aquaculture, lactic bacteria and Bacillus are the major probiotic bacteria used, but PNSB, like Rhodopseudomonas and Rhodobacter, are also used. In this review, we summarize the previous work on the use of PNSB in aquaculture, overview the previous studies on the stimulation of innate immunity of shrimp by various probiotic microorganisms, and also share our results in the probiotic performance of Rhodovulum sulfidophilum KKMI01, a marine PNSB, which showed a superior effect in promotion of growth and stimulation of immunity in shrimp at a quite low concentration of 1 × 103 cfu (colony forming unit)/ml in rearing water.

Special Issue "Biotechnological Application of Photosynthetic Bacteria".

This Special Issue aims to contribute to the current knowledge in the field and promote the practical application of photosynthetic bacteria (PSB) biotechnology [...].

Unprecedented highly efficient photoluminescence in a phosphorescent Ag(I) coordination polymer.

A luminescent three-dimensional coordination polymer (CP) of [CdII(pmd){AgI(CN)2}2] (1; pmd = pyrimidine) comprising two different coordination modes of Ag+ ions was synthesised herein. 1 exhibited thermochromic luminescence, accompanied by positive thermal elongation of the Ag⋯Ag distance. Moreover, 1 showed a bright phosphorescence with the highest photoluminescence quantum yield (Φem), approximately 60% at room temperature, among previously reported phosphorescent Ag-based CPs or metal-organic frameworks.

Inter-layer magnetic tuning by gas adsorption in π-stacked pillared-layer framework magnets.

Magnetism of layered magnets depends on the inter-layer through-space magnetic interactions (J NNNI). Using guest sorption to address inter-layer pores in bulk-layered magnets is an efficient approach to magnetism control because the guest-delicate inter-layer distance (l trans) is a variable parameter for modulating J NNNI. Herein, we demonstrated magnetic changes induced by the adsorption of CO2, N2, and O2 gases in various isostructural layered magnets with a π-stacked pillared-layer framework, , (M = Co, 1, Fe, 2, Cr, 3; Cp* = η5-C5Me5; 2,3,5,6-F4PhCO2 - = 2,3,5,6-tetrafluorobenzoate; TCNQ = 7,7,8,8-tetracyano-p-quinodimethane). Each compound had almost identical adsorption capability for the three types of gases; only CO2 adsorption was found to have a gated profile. A breathing-like structural modulation involving the extension of l trans occurred after the insertion of gases into the isolated pores between the [Ru2]2-TCNQ ferrimagnetic layers, which is more significant for CO2 than for O2 and N2, due to the CO2-gated transition. While adsorbent 1 with M = Co (S = 0) was an antiferromagnet with T N = 75 K, 1⊃CO2 was a ferrimagnet with T C = 76 K, whereas 1⊃N2 and 1⊃O2 were antiferromagnets with T N = 68 K. The guest-insertion effect was similarly confirmed in 2 and 3, and was characteristically dependent on the type of sandwiched spin in as M = Fe (S = 1/2) and Cr (S = 3/2), respectively. This study reveals that common gases such as CO2, O2, and N2 can serve as crucial triggers for the change in magnetism as a function of variable parameter l trans.

Effects of Seed Bio-Priming by Purple Non-Sulfur Bacteria (PNSB) on the Root Development of Rice.

The effects of seed bio-priming (seed soaking) with purple non-sulfur bacteria (PNSB) on the grain productivity and root development of rice were examined by a field study and laboratory experiments, respectively. Two PNSB strains, Rhodopseudomonas sp. Tsuru2 and Rhodobacter sp. Tsuru3, isolated from the paddy field of the study site were used for seed bio-priming. For seed bio-priming in the field study, the rice seeds were soaked for 1 day in water containing a 1 × 105 colony forming unit (cfu)/mL of PNSB cells, and the rice grain productivities at the harvest time were 420, 462 and 504 kg/are for the control, strain Tsuru2-primed, and strain Tsuru3-primed seeds, respectively. The effects of seed priming on the root development were examined with cell pot cultivation experiments for 2 weeks. The total root length, root surface area, number of tips and forks were evaluated with WinRhizo, an image analysis system, and strains Tsuru2- and Tsuru3-primed seeds showed better root development than the control seeds. The effects of seed priming with the dead (killed) PNSB cells were also examined, and the seed priming with the dead cells was also effective, indicating that the effects were attributed to some cellular components. We expected the lipopolysaccharide (LPS) of PNSB as the effective component of PNSB and found that seed priming with LPS of Rhodobacter sphaeroides NBRC 12203 (type culture) at the concentrations of 5 ng/mL and 50 ng/mL enhanced the root development.

Chiral weak ferromagnets formed in one-dimensional organic-inorganic hybrid manganese chloride hydrates.

Chiral weak ferromagnets were developed in organic-inorganic hybrid systems of one-dimensional manganese(II) chloride hydrate with chiral organic cations of (S)- and (R)-ß-methylphenethylammonium (= (S)- and (R)-MPA+), [(S)/(R)-MPA]2[MnCl4(H2O)]. The weak ferromagnetic phase found below 3.2 K could be attributed to a spin canting antiferromagnetic state induced by Dzyaloshinskii-Moriya interactions owing to spatial inversion symmetry breaking in chirality introduced systems. This is the first chiral weak ferromagnet found in a spin chain of deformed perovskite derivatives with a corner-sharing structure of transition metal halide hydrates.

Considerations on Gated CO2 Adsorption Behavior in One-Dimensional Porous Coordination Polymers Based on Paddlewheel-Type Dimetal Complexes: What Determines Gate-Opening Temperatures?

Low-dimensional coordination polymers such as one-dimensional chains often exhibit gated guest sorption accompanying structural transition at a temperature (TG), which is associated with an external pressure of the guest (PG) characteristic to the material and guest used. This phenomenon can be evaluated using the Clausius-Clapeyron relationship with the equation d(ln PG)/d(1/TG) = ΔHG/R, where ΔHG and R are the transition enthalpy and gas constant, respectively. In this study, gated CO2 adsorption behavior was investigated in a one-dimensional chain based on a benzoate-bridged paddlewheel diruthenium(II,II) complex with a phenazine (phz) linker, [Ru2(p-MeOPhCO2)4(phz)] (1; p-MeOPhCO2- = p-anisate). Surprisingly, 1 underwent gate opening (GO)/closing (GC) at a much higher TG, e.g., 385 K for GC, under PCO2 = 100 kPa than those previously reported for such chain compounds, which usually appeared in the temperature range of 200-270 K. The transition entropy ΔSG in each system plays a key role in shifting TG; 1 results in a much smaller |ΔSG| in the series. Only 1 produced a CO2-accessible two-dimensional topological pore in its CO2-adsorbed phase 1⊃CO2, whereas the others reported previously produced one-dimensional or discrete topological pores for CO2 accommodation, strongly reflecting the degree of freedom of CO2 molecules in pores, which is related to ΔSG.

Syntheses, Structures, and Properties of Coordination Polymers with 2,5-Dihydroxy-1,4-Benzoquinone and 4,4'-Bipyridyl Synthesized by In Situ Hydrolysis Method.

The coordination polymers (CPs) with binary ligands, including 2,5-dihydroxy-1,4-benzoquinone (H2DHBQ) and 4,4'-bipyridyl (bpy), were synthesized using in situ hydrolysis of 2,5-dimethoxy-1,4-benzoquinone (DMBQ). Three kinds of CPs were obtained depending on the metal ions. For M = Mn and Zn, a 1D zigzag chain structure with cis conformation ( cis-1D-M) was obtained, whereas Co, Ni, and Cu compounds afforded a 2D net structure with trans conformation (trans -2D-M) with a 1D pore. A linear chain structure was also obtained for M = Cu. Magnetic susceptibility (χM T) at 300 K in cis -1D-Mn and trans -2D-Co was evaluated to be 4.421 and 2.950 cm3 K mol-1, respectively, indicating that both compounds are in the high-spin state. According to the N2 adsorption isotherms at 77 K, trans -2D-Ni showed microporosity with the BET surface area of 177 m2 g-1, whereas the isomorphic trans -2D-Co rarely adsorbed N2 at 77 K. This phenomenon was explained by the difference of diffusion kinetics of the adsorbent molecules, which was supported by the CO2 adsorption isotherms at 195 K. The optical band gaps of cis -1D-Mn, cis -1D-Zn, trans -2D-Co, and trans -2D-Ni were estimated to be 1.6, 1.8, 1.0, and 1.1 eV, respectively, by using UV-vis-NIR spectroscopy.

Plant-Growth-Promoting Effect by Cell Components of Purple Non-Sulfur Photosynthetic Bacteria.

Rhodobacter sphaeroides, a purple non-sulfur photosynthetic bacterium (PNSB), was disrupted by sonication and fractionated by centrifugation into the supernatant and pellet. The effects of the supernatant and pellet on plant growth were examined using Brassica rapa var. perviridis (komatsuna) in the pot experiments. Both fractions showed growth-promoting effects: the supernatant at high concentrations (1 × 107 to 4 × 107 cfu-equivalent mL-1) and the pellet at a low concentration of 2 × 103 cfu-equivalent mL-1). We expected lipopolysaccharide (LPS) to be the active principle of the pellet fraction and examined the effects of LPS on the growth of B. rapa var. perviridis. The growth of the plants was significantly enhanced by the foliar feeding of R. sphaeroides LPS at concentrations ranging from 10 to 100 pg mL-1. The present study is the first report indicating that LPS acts as one of the active principles of the plant-growth-promoting effect of PNSB.

Probiotic Effects of a Marine Purple Non-Sulfur Bacterium, Rhodovulum sulfidophilum KKMI01, on Kuruma Shrimp (Marsupenaeus japonicus).

Purple non-sulfur bacteria (PNSB) are used as probiotics in shrimp aquaculture; however, no studies have examined the probiotic effects of PNSB in shrimp at the gene expression level. In this study, we examined the effects of a marine PNSB, Rhodovulum sulfidophilum KKMI01, on the gene expression of kuruma shrimp (Marsupenaeus japonicus). Short-term (3 days) effects of R. sulfidophilum KKMI01 on the gene expression in shrimp were examined using small-scale laboratory aquaria experiments, while long-term (145 days) effects of R. sulfidophilum KKMI01 on the growth performance and gene expression were examined using 200-ton outdoor aquaria experiments. Gene expression levels were examined using qRT-PCR. Results of the short-term experiments showed the upregulation of several molting-related genes, including cuticle proteins, calcification proteins, and cuticle pigment protein, suggesting that PNSB stimulated the growth of shrimp. The upregulation of several immune genes, such as prophenoloxidase, antimicrobial peptides, and superoxide dismutase, was also observed. In the 145-day outdoor experiments, the average body weight at harvest time, survival rate, and feed conversion ratio were significantly improved in PNSB-treated shrimp, and upregulation of molting and immune-related genes were also observed. When PNSB cells were added to the rearing water, the effective dosage of PNSB was as low as 103 cfu/mL, which was more than a million times dilution of the original PNSB culture (2-3 × 109 cfu/mL), indicating that R. sulfidophilum KKMI01 provides a feasible and cost-effective application as a probiotic candidate in shrimp aquaculture.

A Host-Guest Electron Transfer Mechanism for Magnetic and Electronic Modifications in a Redox-Active Metal-Organic Framework.

Host-guest electron transfer (HGET) in molecular framework systems is a critical trigger for drastic functional changes in both host framework and guest. A reversible magnetic phase transition was achieved via HGET in a layered framework, [{Ru2 (2,6-F2 PhCO2 )4 }2 (BTDA-TCNQ)] (1), where 2,6-F2 PhCO2 - and BTDA-TCNQ represent 2,6-difluorobenzoate and bis[1,2,5]dithiazolotetracyanoquinodimethane, respectively. The guest-free 1 with an antiferromagnetic ground state transformed into a paramagnet, [{Ru2 (2,6-F2 PhCO2 )4 }2 (BTDA-TCNQ)]I3 (1-I3 ), by adsorbing iodine (I2 ). The local charge distribution of [{Ru2 II,III }+ -(BTDA-TCNQ).- -{Ru2 II,II }] in 1 was reversibly modified to [{Ru2 II,III }+ -(BTDA-TCNQ)0 -{Ru2 II,II }](I3 - ) in 1-I3 through HGET. Theoretical calculations of 1-I3 indicated a partial charge delocalization as [{Ru2 }(1-δ)+ -(BTDA-TCNQ)0 -{Ru2 }δ+ ](I3 - ) with δ≈0.2, aided by weak ferromagnetic coupling. 1-I3 exhibited a hundred-fold enhancement in electrical conductivity compared to that of 1.

Isolation of purple nonsulfur bacteria from the digestive tract of ayu (Plecoglossus altivelis).

Purple nonsulfur bacteria (PNSB) reportedly have probiotic effects in fish, but whether they are indigenous in the digestive tract of fish is a question that requires answering. We attempted to isolate PNSB from the digestive tract of ayu (Plecoglossus altivelis) from the Kuma River (Kumamoto, Japan) and successfully isolated 12 PNSB strains. All the isolated PNSB belonged to the genus Rhodopseudomonas. Five Rhodopseudomonas strains were also isolated from the soil samples collected along the Kuma River. The phylogenetic tree based on the partial sequence of pufLM gene indicated that the PNSB from ayu and soil were similar. The effects of NaCl concentration in growth medium on growth were also compared between the PNSB from ayu and soil. The PNSB from ayu showed a better growth performance at a higher NaCl concentration, suggesting that the intestinal tract of ayu, a euryhaline fish, might provide suitable environment for halophilic microorganisms.