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1.
J Chem Phys ; 142(13): 134201, 2015 Apr 07.
Article in English | MEDLINE | ID: mdl-25854235

ABSTRACT

We here revisit expansion schemes used in nuclear magnetic resonance (NMR) for the calculation of effective Hamiltonians and propagators, namely, Magnus, Floquet, and Fer expansions. While all the expansion schemes are powerful methods there are subtle differences among them. To understand the differences, we performed explicit calculation for heteronuclear dipolar decoupling, cross-polarization, and rotary-resonance experiments in solid-state NMR. As the propagator from the Fer expansion takes the form of a product of sub-propagators, it enables us to appreciate effects of time-evolution under Hamiltonians with different orders separately. While 0th-order average Hamiltonian is the same for the three expansion schemes with the three cases examined, there is a case that the 2nd-order term for the Magnus/Floquet expansion is different from that obtained with the Fer expansion. The difference arises due to the separation of the 0th-order term in the Fer expansion. The separation enables us to appreciate time-evolution under the 0th-order average Hamiltonian, however, for that purpose, we use a so-called left-running Fer expansion. Comparison between the left-running Fer expansion and the Magnus expansion indicates that the sign of the odd orders in Magnus may better be reversed if one would like to consider its effect in order.

2.
Appl Environ Microbiol ; 78(14): 4902-7, 2012 Jul.
Article in English | MEDLINE | ID: mdl-22582059

ABSTRACT

Equol is metabolized from daidzein, a soy isoflavone, by the gut microflora. In this study, we identified a novel dihydrodaidzein racemase (L-DDRC) that is involved in equol biosynthesis in a lactic acid bacterium, Lactococcus sp. strain 20-92, and confirmed that histidine-tagged recombinant L-DDRC (L-DDRC-His) was able to convert both the (R)- and (S)-enantiomers of dihydrodaidzein to the racemate. Moreover, we showed that recombinant L-DDRC-His was essential for in vitro equol production from daidzein by a recombinant enzyme mixture and that efficient in vitro equol production from daidzein was possible using at least four enzymes, including L-DDRC. We also proposed a model of the metabolic pathway from daidzein to equol in Lactococcus strain 20-92.


Subject(s)
Equol/biosynthesis , Isoflavones/metabolism , Lactococcus/enzymology , Racemases and Epimerases/genetics , Bacterial Proteins/genetics , Bacterial Proteins/metabolism , Lactococcus/genetics , Lactococcus/metabolism , Metabolic Networks and Pathways , Molecular Sequence Data , Racemases and Epimerases/metabolism , Recombinant Proteins/genetics , Recombinant Proteins/metabolism , Sequence Analysis, DNA , Stereoisomerism
3.
J Mol Microbiol Biotechnol ; 21(3-4): 160-72, 2011.
Article in English | MEDLINE | ID: mdl-22286043

ABSTRACT

Lactococcus strain 20-92 is a bacterium that produces equol directly from daidzein under anaerobic conditions. In this study, we reveal that the transcription of the gene encoding daidzein reductase in Lactococcus strain 20-92 (L-DZNR), which is responsible for the first stage of the biosynthesis of equol from daidzein, is regulated by the presence of daidzein. We analyzed the sequence surrounding the L-DZNR gene and found six novel genes, termed orf-US4, orf-US3, orf-US2, orf-US1, orf-DS1 and orf-DS2. These genes were expressed in Escherichia coli, and the resulting gene products were assayed for dihydrodaidzein reductase (DHDR) and tetrahydrodaidzein reductase (THDR) activity. The results showed that orf-US2 and orf-US3 encoded DHDR and THDR, respectively. DHDR in Lactococcus strain 20-92 (L-DHDR) was similar to the 3-oxoacyl-acyl-carrier-protein reductases of several bacteria and belonged to the short chain dehydrogenase/reductase family. THDR in Lactococcus strain 20-92 (L-THDR) was similar to several putative fumarate reductase/succinate dehydrogenase flavoprotein domain proteins. L-DHDR required NAD(P)H for its activity, whereas L-THDR required neither NADPH nor NADH. Thus, we succeeded in identifying two novel enzymes that are related to the second and third stages of the biosynthetic pathway that converts daidzein to equol.


Subject(s)
Equol/biosynthesis , Isoflavones/metabolism , Lactococcus/enzymology , Lactococcus/metabolism , Oxidoreductases/genetics , Oxidoreductases/metabolism , Amino Acid Sequence , Biosynthetic Pathways/genetics , Cloning, Molecular , Coenzymes/metabolism , Escherichia coli/genetics , Gene Expression , Genes, Bacterial , Lactococcus/genetics , Molecular Sequence Data , NADP/metabolism , Oxidation-Reduction , Sequence Analysis, DNA , Sequence Homology, Amino Acid
4.
Appl Environ Microbiol ; 76(17): 5892-901, 2010 Sep.
Article in English | MEDLINE | ID: mdl-20639368

ABSTRACT

Equol is a metabolite produced from daidzein by enteric microflora, and it has attracted a great deal of attention because of its protective or ameliorative ability against several sex hormone-dependent diseases (e.g., menopausal disorder and lower bone density), which is more potent than that of other isoflavonoids. We purified a novel NADP(H)-dependent daidzein reductase (L-DZNR) from Lactococcus strain 20-92 (Lactococcus 20-92; S. Uchiyama, T. Ueno, and T. Suzuki, international patent WO2005/000042) that is involved in the metabolism of soy isoflavones and equol production and converts daidzein to dihydrodaidzein. Partial amino acid sequences were determined from purified L-DZNR, and the gene encoding L-DZNR was cloned. The nucleotide sequence of this gene consists of an open reading frame of 1,935 nucleotides, and the deduced amino acid sequence consists of 644 amino acids. L-DZNR contains two cofactor binding motifs and an 4Fe-4S cluster. It was further suggested that L-DZNR was an NAD(H)/NADP(H):flavin oxidoreductase belonging to the old yellow enzyme (OYE) family. Recombinant histidine-tagged L-DZNR was expressed in Escherichia coli. The recombinant protein converted daidzein to (S)-dihydrodaidzein with enantioselectivity. This is the first report of the isolation of an enzyme related to daidzein metabolism and equol production in enteric bacteria.


Subject(s)
Isoflavones/metabolism , Lactococcus/enzymology , NADH, NADPH Oxidoreductases/genetics , NADH, NADPH Oxidoreductases/metabolism , Amino Acid Sequence , Cloning, Molecular , Coenzymes/metabolism , Equol , Escherichia coli/genetics , Escherichia coli/metabolism , Lactococcus/genetics , Molecular Sequence Data , NADH, NADPH Oxidoreductases/isolation & purification , Oxidation-Reduction , Recombinant Proteins/genetics , Recombinant Proteins/metabolism , Sequence Alignment , Sequence Analysis, DNA , Sequence Homology, Amino Acid
5.
Neurosci Res ; 43(3): 251-7, 2002 Jul.
Article in English | MEDLINE | ID: mdl-12103443

ABSTRACT

Mint-1, which is also called as X11 or mammalian Lin10, protein has been implicated in the synaptic vesicle exocytosis and the targeting and localization of synaptic membrane proteins. Here, we established mint-1 gene knockout (mint-1 KO) mice and investigated vesicular and transporter-mediated dopamine (DA) release evoked by high K(+) and methamphetamine (METH), respectively. Compared with wild-type control, high K(+)-evoked striatal DA release was attenuated, but not significantly, in the KO mice as measured by microdialysis method. The METH-induced DA release was significantly attenuated in the KO mice. In addition, METH-induced stereotypy was also significantly attenuated in the KO mice. Mint-1 KO mice showed more sensitive and prominent behavioral response to an approaching object as compared with wild-type mice. These results suggest that mint-1 protein is involved in transporter-mediated DA release induced by METH.


Subject(s)
Carrier Proteins/genetics , Corpus Striatum/drug effects , Corpus Striatum/metabolism , Dopamine/metabolism , Methamphetamine/pharmacology , Nerve Tissue Proteins/deficiency , Nerve Tissue Proteins/genetics , Adaptor Proteins, Signal Transducing , Animals , Male , Mice , Mice, Inbred C57BL , Mice, Knockout , Stereotyped Behavior/drug effects , Stereotyped Behavior/physiology
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