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1.
Biomolecules ; 4(2): 474-97, 2014 May 05.
Article in English | MEDLINE | ID: mdl-24970226

ABSTRACT

Metallochaperones function as intracellular shuttles for metal ions. At present, no evidence for the existence of any eukaryotic zinc-chaperone has been provided although metallochaperones could be critical for the physiological functions of Zn2+ metalloenzymes. We propose that the complex formed in skeletal muscle by the Zn2+ metalloenzyme AMP deaminase (AMPD) and the metal binding protein histidine-proline-rich glycoprotein (HPRG) acts in this manner. HPRG is a major plasma protein. Recent investigations have reported that skeletal muscle cells do not synthesize HPRG but instead actively internalize plasma HPRG. X-ray absorption spectroscopy (XAS) performed on fresh preparations of rabbit skeletal muscle AMPD provided evidence for a dinuclear zinc site in the enzyme compatible with a (µ-aqua)(µ-carboxylato)dizinc(II) core with two histidine residues at each metal site. XAS on HPRG isolated from the AMPD complex showed that zinc is bound to the protein in a dinuclear cluster where each Zn2+ ion is coordinated by three histidine and one heavier ligand, likely sulfur from cysteine. We describe the existence in mammalian HPRG of a specific zinc binding site distinct from the His-Pro-rich region. The participation of HPRG in the assembly and maintenance of skeletal muscle AMPD by acting as a zinc chaperone is also demonstrated.


Subject(s)
AMP Deaminase/metabolism , Molecular Chaperones/metabolism , Muscle, Skeletal/metabolism , Proteins/metabolism , Zinc/metabolism , Animals , Humans , Molecular Chaperones/biosynthesis , Molecular Chaperones/chemistry , Protein Transport , Proteins/chemistry
2.
Cell Biol Int ; 36(4): 397-401, 2012 Apr 01.
Article in English | MEDLINE | ID: mdl-22122471

ABSTRACT

A highly reproducible 2D (two-dimensional) map for the proteome and a pattern of protein phosphorylation of high secretory variant of RBL-2H3 cells (RBL-2H3.1) (a model cell in allergy studies) in resting and treated cells with IgE or IgE+Ag are presented. Major molecular changes were seen in the proteome of 3 h-activated cells with IgE+Ag, especially for proteins of ∼17 kDa compared with the control. We have identified 13 proteins on 11 corresponding spots as up-regulated proteins in response to IgE+Ag activation. Also, protein identification on 55 spots with MALDI-TOF (matrix-assisted laser-desorption ionization-time-of-flight) and ESI-MS (electrospray ionization mass spectrometry) resulted in a reliable 2D reference map and an opportunity for the subsequent use of a 1 min-activated cell map for a phosphoproteomics study.


Subject(s)
Hypersensitivity/metabolism , Immunoconjugates/pharmacology , Immunoglobulin E/pharmacology , Proteome/metabolism , Signal Transduction/genetics , 2,4-Dinitrophenol/chemistry , Cell Line , Electrophoresis, Gel, Two-Dimensional , Gene Expression Regulation/drug effects , Gene Expression Regulation/immunology , Humans , Hypersensitivity/genetics , Hypersensitivity/immunology , Immunoconjugates/immunology , Immunoglobulin E/immunology , Models, Biological , Phosphorylation/drug effects , Proteome/genetics , Proteome/immunology , Proteomics , Serum Albumin/chemistry , Signal Transduction/drug effects , Signal Transduction/immunology , Spectrometry, Mass, Electrospray Ionization , Spectrometry, Mass, Matrix-Assisted Laser Desorption-Ionization
3.
Iran J Allergy Asthma Immunol ; 10(2): 73-80, 2011 Jun.
Article in English | MEDLINE | ID: mdl-21625015

ABSTRACT

IgE-mediated cell signaling, induced by cross-linking of high affinity receptor for IgE (FcεRI) in the presence of antigen (Ag), is a well known mechanism described for mast cell activation in allergy and hypersensitivity reactions, which induces a spectrum of cellular responses such as secretion and up-regulation of cell surface FcεRI. Although for several years IgE binding to FcεRI was considered to be a passive sensitization process, the outcomes of several recent studies have revealed a variety of different cellular responses to IgE binding compared to IgE plus Antigen binding. The present study applied a functional proteomics-based approach to investigate mast cell signaling events and provided new insights to FcεRI-mediated cell signaling in RBL-2H3.1 cells, and may point to the activation of alternative signaling pathways in response to IgE or IgE plus Ag. Comparative analysis by 2-D PAGE of RBL cells activated with IgE plus Ag for three and four hours compared to non-activated cells was followed by mass spectrometric protein identification and provided evidence for the induction of Stathmin 1 (STMN1) gene expression in response to IgE plus Ag activation.Complementary SDS-PAGE analysis showed a distinct up-regulation of STMN1 induction in response to challenge with IgE plus Ag compared to sensitization with IgE only. Phosphoproteomics analysis gave evidence for significant increase at phosphorylation of STMN1 on ser16 after 1min, though a slight rise at 5 min, and on ser38 after 1 and 5min sensitization with IgE and a similar result was observed for 1min IgE plus Ag-activation. IgE plus Ag-activation was also found to induce the phosphorylation of ser38 to a greater extent than sensitization with IgE. In contrast, IgE alone was more effective than IgE plus Ag at inducing phosphorylation of ser16. Collectively this study provides further insights into the role of stathmin 1 in FcRI-mediated activation of cells of mast cell lineage and might shed light on the diverse response of these cells to IgE or IgE plus Ag.


Subject(s)
Immunoglobulin E/immunology , Mast Cells/physiology , Stathmin/physiology , Animals , Cell Line, Tumor , Leukemia, Basophilic, Acute/pathology , Phosphorylation , Rats , Receptors, IgE/physiology , Signal Transduction
4.
J Mol Biol ; 385(1): 226-35, 2009 Jan 09.
Article in English | MEDLINE | ID: mdl-18983850

ABSTRACT

Cutinase belongs to a group of enzymes that catalyze the hydrolysis of esters and triglycerides. Structural studies on the enzyme from Fusarium solani have revealed the presence of a classic catalytic triad that has been implicated in the enzyme's mechanism. We have solved the crystal structure of Glomerella cingulata cutinase in the absence and in the presence of the inhibitors E600 (diethyl p-nitrophenyl phosphate) and PETFP (3-phenethylthio-1,1,1-trifluoropropan-2-one) to resolutions between 2.6 and 1.9 A. Analysis of these structures reveals that the catalytic triad (Ser136, Asp191, and His204) adopts an unusual configuration with the putative essential histidine His204 swung out of the active site into a position where it is unable to participate in catalysis, with the imidazole ring 11 A away from its expected position. Solution-state NMR experiments are consistent with the disrupted configuration of the triad observed crystallographically. H204N, a site-directed mutant, was shown to be catalytically inactive, confirming the importance of this residue in the enzyme mechanism. These findings suggest that, during its catalytic cycle, cutinase undergoes a significant conformational rearrangement converting the loop bearing the histidine from an inactive conformation, in which the histidine of the triad is solvent exposed, to an active conformation, in which the triad assumes a classic configuration.


Subject(s)
Carboxylic Ester Hydrolases/chemistry , Carboxylic Ester Hydrolases/metabolism , Phyllachorales/enzymology , Acetone/metabolism , Amino Acid Sequence , Apoenzymes/chemistry , Carboxylic Ester Hydrolases/antagonists & inhibitors , Catalysis/drug effects , Catalytic Domain , Crystallography, X-Ray , Enzyme Activation/drug effects , Enzyme Inhibitors/chemistry , Enzyme Inhibitors/pharmacology , Glutamic Acid , Histidine , Magnetic Resonance Spectroscopy , Mass Spectrometry , Models, Molecular , Molecular Sequence Data , Mutant Proteins/chemistry , Protein Structure, Secondary , Sequence Alignment , Solutions
5.
Article in English | MEDLINE | ID: mdl-18540061

ABSTRACT

Cutinase catalyzes the hydrolysis of water-soluble esters and long-chain triglycerides and belongs to the family of serine hydrolases. The enzyme is thought to represent an evolutionary link between the esterase and lipase families and has potential applications in a wide range of industrial hydrolytic processes, for which an understanding of the molecular basis of its substrate specificity is critical. Glomerella cingulata cutinase has been cloned and the protein has been overexpressed in Escherichia coli, purified and subsequently crystallized in a wide range of different crystal forms in the presence and absence of inhibitors. The best crystals are those of the apo cutinase, which diffract to beyond 1.6 A resolution and belong to space group P4(1)2(1)2 or P4(3)2(1)2. Crystals of cutinase with the inhibitors PETFP or E600 belong to space groups P2(1)2(1)2(1) and P2(1), respectively, and diffract to approximately 2.5 A resolution. All of the crystals are suitable for structural studies, which are currently ongoing.


Subject(s)
Carboxylic Ester Hydrolases/chemistry , Phyllachorales/enzymology , Binding Sites , Carboxylic Ester Hydrolases/genetics , Carboxylic Ester Hydrolases/isolation & purification , Crystallization , Escherichia coli/genetics , Glycine/chemistry , Protein Binding , Protein Folding , Protein Structure, Secondary , Recombinant Proteins/chemistry , Serine/chemistry , X-Ray Diffraction
6.
Peptides ; 29(6): 1004-9, 2008 Jun.
Article in English | MEDLINE | ID: mdl-18355945

ABSTRACT

The melanocortin peptides alpha-MSH, Lys-Pro-Val and Lys-Pro-D-Val are known to be potent anti-inflammatory agents; however their role as antibacterial peptides is less clear. The aim of this study was to determine whether these peptides displayed antibacterial properties, and specifically whether the Lys-Pro-D-Val tripeptide was more potent than Lys-Pro-Val, consistent with their anti-inflammatory actions. alpha-MSH, Ac-Lys-Pro-D-Val-NH2 and Ac-Lys-Pro-Val-NH2 were found to be antibacterial against both Gram-positive and Gram-negative bacteria (Staphylococcus aureus and Escherichia coli) over a broad range of concentrations compared to a control peptide, Ac-Ala-Ala-Ala-NH2. However, the relative potency of alpha-MSH, Ac-Lys-Pro-D-Val-NH2, Ac-Lys-Pro-Val-NH2 did not differ. Furthermore, it was found that the cationic charge on the lysine residue was not required for activity as a variant peptide Ac-Ala-Pro-D-Val-NH2 was also antibacterial. We therefore describe a novel X-Pro-D/L-Val peptide sequence with similarity to the short melanocortin peptides, which possess antibacterial activity. The combined anti-inflammatory and antibacterial action of such peptides may also have potential value therapeutically.


Subject(s)
Anti-Bacterial Agents/pharmacology , Gram-Negative Bacteria/drug effects , Gram-Positive Bacteria/drug effects , Melanocortins/pharmacology , Oligopeptides/pharmacology , Amino Acid Sequence , Anti-Bacterial Agents/chemistry , Dipeptides/chemistry , Dose-Response Relationship, Drug , Escherichia coli/drug effects , Humans , Melanocortins/chemistry , Melanocyte-Stimulating Hormones/chemistry , Melanocyte-Stimulating Hormones/metabolism , Molecular Sequence Data , Oligopeptides/chemistry , Peptide Fragments/chemistry , Peptide Fragments/metabolism , Staphylococcus aureus/drug effects , Temperature , Time Factors
7.
Microbiology (Reading) ; 154(Pt 2): 633-642, 2008 Feb.
Article in English | MEDLINE | ID: mdl-18227266

ABSTRACT

Some enteric bacteria synthesize a pore-forming toxin, HlyE, which is cytolytic and cytotoxic to host cells. Measurement of HlyE binding to erythrocyte ghosts and the kinetics of HlyE-mediated erythrocyte lysis suggests that interaction with target membranes is not the rate-limiting step in the formation of HlyE pores, but that there is a temperature-dependent lag phase before a functional pore is formed. Circular dichroism and fluorescence energy transfer analyses show that HlyE protomers retain an alpha-helical structure when oligomerized to form a pore consisting of parallel HlyE protomers. Comparison of the proteolytic sensitivities of the water-soluble and oligomeric forms of HlyE identifies inner and outer surfaces of the pore. This new information has been used to constrain a model of the HlyE pore, which allows a more detailed interpretation of previous low-resolution 3D reconstructions and suggests a novel mechanism for insertion of HlyE into target membranes.


Subject(s)
Escherichia coli K12/chemistry , Escherichia coli Proteins/chemistry , Hemolysin Proteins/chemistry , Amino Acid Sequence , Circular Dichroism , Erythrocytes/microbiology , Fluorometry , Hemolysis , Imaging, Three-Dimensional , Microscopy, Electron , Models, Molecular , Molecular Structure , Porins/chemistry , Protein Binding , Protein Conformation , Protein Structure, Tertiary , Temperature
8.
Biochim Biophys Acta ; 1774(12): 1508-18, 2007 Dec.
Article in English | MEDLINE | ID: mdl-17991449

ABSTRACT

We have previously provided evidence for a dinuclear zinc site in rabbit skeletal muscle AMPD compatible with a (micro-aqua)(micro-carboxylato)dizinc(II) core with an average of two histidine residues at each metal site. XAS of the zinc binding site of the enzyme in the presence of PRN favors a model where PRN is added to the coordination sphere of one of the two zinc ions increasing its coordination number to five. The uncompetitive nature of the inhibition of AMPD by fluoride reveals that the anion probably displaces the nucleophile water molecule terminally coordinated to the catalytic Zn(1) ion at the enzyme C-terminus, following the binding of AMP at the Zn(2) ion located at N-terminus of the enzyme. Thus, the two Zn ions in the AMPD metallocenter operate together as a single catalytic unit, but have independent function, one of them (Zn(1)) acting to polarize the nucleophile water molecule, whilst the other (Zn(2)) acts transiently as a receptor for an activating substrate molecule. The addition of fluoride to AMPD also abolishes the cooperative behaviour induced in the enzyme by the inhibitory effect of ATP at acidic pH that probably resides in the competition with the substrate for an adenine nucleotide specific regulatory site located in the Zn(2) ion binding region and which is responsible for the positive homotropic cooperativity behaviour of AMPD.


Subject(s)
AMP Deaminase/chemistry , AMP Deaminase/metabolism , Catalytic Domain , Metalloproteins/chemistry , Muscle, Skeletal/enzymology , Zinc/metabolism , Absorptiometry, Photon , Adenosine Triphosphate/pharmacology , Animals , Binding Sites , Catalysis , Fluorides/pharmacology , Hydrogen-Ion Concentration , Models, Biological , Protein Binding , Purine Nucleosides/metabolism , Rabbits , Ribonucleosides/metabolism , Substrate Specificity
9.
Biochim Biophys Acta ; 1774(2): 312-22, 2007 Feb.
Article in English | MEDLINE | ID: mdl-17254852

ABSTRACT

XAS of Zn-peptide binary and ternary complexes prepared using peptides mimicking the potential metal binding sites of rabbit skeletal muscle AMP deaminase (AMPD) strongly suggest that the region 48-61 of the enzyme contains a zinc binding site, whilst the region 360-372 of the enzyme is not able to form 1:1 complexes with zinc, in contrast with what has been suggested for the corresponding region of yeast AMPD. XAS performed on fresh preparations of rabbit skeletal muscle AMPD provides evidence for a dinuclear zinc site in the enzyme compatible with a (mu-aqua)(mu-carboxylato)dizinc(II) core with an average of two histidine residues at each metal site and a Zn-Zn distance of about 3.3 Angstrom. The data indicate that zinc is not required for HPRG/AMPD interaction, both zinc ions being bound to the catalytic subunit of the enzyme, one to the three conserved amino acid residues among those four assumed to be in contact with zinc in yeast AMPD, and the other at the N-terminal region, probably to His-52, Glu-53 and His-57. Tryptic digests of different enzyme preparations demonstrate the existence of two different protein conformations and of a zinc ion connecting the N-terminal and C-terminal regions of AMPD.


Subject(s)
AMP Deaminase/metabolism , Muscle, Skeletal/enzymology , Zinc/metabolism , AMP Deaminase/chemistry , Amino Acid Sequence , Animals , Crystallography, X-Ray , Fourier Analysis , Humans , Molecular Sequence Data , Rabbits , Rats , Spectrum Analysis/methods , Zinc/chemistry
10.
J Muscle Res Cell Motil ; 27(1): 83-92, 2006.
Article in English | MEDLINE | ID: mdl-16570231

ABSTRACT

We have previously described that, in healthy human skeletal muscle, an anti-histidine-proline-rich-glycoprotein (HPRG) antibody selectively binds to type IIB fibers that are well known to contain the highest level of AMP deaminase (AMPD) activity, suggesting an association of the HPRG-like protein to the enzyme isoform M. The present paper reports an immunohistochemical study performed on human skeletal muscle biopsies from patients with AMPD deficiency and carried out utilizing both the anti-HPRG antibody and an anti-AMPD antibody specific for the isoform M. A correlation between the muscle content of the HPRG-like protein and the level of AMPD activity was demonstrated. In the specimens from patients with Acquired AMPD deficiency the HPRG-immunoreactivity was less intense than that shown by the control subjects and was related to the residual AMPD activity. The patients affected by Primary and Coincidental AMPD deficiency, which were characterized by an absence of enzyme activity and AMPD immunoreactivity, showed the lowest HPRG immunoreactivity that was clearly detectable by Western blot analysis, but not by immunohistochemistry. The interpretation of the significance of these observations suggests a physiological mutual dependence between skeletal muscle HPRG and AMPD polypeptides with regard to their stability.


Subject(s)
AMP Deaminase/deficiency , Muscle, Skeletal/enzymology , Muscular Diseases/enzymology , Proteins/metabolism , Adult , Aged , Antibodies , Antibody Specificity/immunology , Biomarkers/metabolism , Child , Child, Preschool , Female , Humans , Immunohistochemistry , Male , Middle Aged , Muscle, Skeletal/immunology , Muscle, Skeletal/physiopathology , Muscular Diseases/immunology , Muscular Diseases/physiopathology , Peptides/metabolism
11.
Curr Drug Discov Technol ; 2(1): 37-44, 2005 Mar.
Article in English | MEDLINE | ID: mdl-16472240

ABSTRACT

Type I collagen is the major fibrous protein of mammals being needed to strengthen and organise the extracellular matrix (ECM). Connective tissue components are modulated by matrix metalloproteinases, which are critical for disintegration and remodelling of ECM under physiological and pathological conditions. Cardosin A is an abundant aspartic proteinase (AP) from Cynara cardunculus L. that has been shown to be able to hydrolyse fibrillar collagen within the alpha-chains. The aim of this work is the characterisation of collagen degradation by cardosin A, since in the native state fibrillar collagen is resistant to most proteolytic enzymes. The pattern of type I collagen hydrolysis by cardosin A is defined and maintained for at least 24 hours of digestion, suggesting that cardosin A can hydrolyse collagen at a small number of specific peptide bonds. N-terminal sequencing of hydrolysis products identified one cleavage site as being Phe464-Gln465 in the alpha2 chain of collagen I. Two peptides were synthesised correspondent to collagen I specific sequences, in order to produce two polyclonal antibodies, that allowed the identification of three collagen fragments following cardosin A cleavage. Defining the mechanism of collagen cleavage by collagenases and other enzymes, like cardosin A, is important for the comprehension of physiological and pathological processes affecting the ECM. To our knowledge, this is the first study of in vitro collagenolytic activity of a plant AP. Therefore, in view of the cardosin A restricted specificity towards collagen this enzyme may be proposed for an eventual medical or technical procedures assisting ECM remodelling.


Subject(s)
Aspartic Acid Endopeptidases/pharmacology , Collagen Type I/metabolism , Extracellular Matrix/metabolism , Plant Proteins/pharmacology , Amino Acid Sequence , Animals , Collagen Type I/chemistry , Hydrolysis , Rabbits
12.
Biotechnol Lett ; 26(2): 115-9, 2004 Jan.
Article in English | MEDLINE | ID: mdl-15000477

ABSTRACT

A Bacillus licheniformis strain, 189, isolated from a hot spring environment in the Azores, Portugal, strongly inhibited growth of Gram-positive bacteria. It produced a peptide antibiotic at 50 degrees C. The antibiotic was purified and biochemically characterized. It was highly resistant to several proteolytic enzymes. Additionally, it retained its antimicrobial activity after incubation at pH values between 3.5 and 8; it was thermostable, retaining about 85% and 20% of its activity after 6 h at 50 degrees C and 100 degrees C, respectively. Its molecular mass determined by mass spectrometry was 3249.7 Da.


Subject(s)
Anti-Bacterial Agents/pharmacology , Bacillus/metabolism , Gram-Positive Bacteria/drug effects , Peptides , Anti-Bacterial Agents/isolation & purification , Azores , Endopeptidases/metabolism , Hydrogen-Ion Concentration , Mass Spectrometry
13.
Microbiology (Reading) ; 150(Pt 2): 355-363, 2004 Feb.
Article in English | MEDLINE | ID: mdl-14766913

ABSTRACT

Spores of Bacillus anthracis, the causative agent of anthrax, possess an exosporium. As the outer surface layer of these mature spores, the exosporium represents the primary contact surface between the spore and environment/host and is a site of spore antigens. The exosporium was isolated from the endospores of the B. anthracis wild-type Ames strain, from a derivative of the Ames strain cured of plasmid pXO2(-), and from a previously isolated pXO1(-), pXO2(-) doubly cured strain, B. anthracis UM23Cl2. The protein profiles of SDS-PAGE-separated exosporium extracts were similar for all three. This suggests that avirulent variants lacking either or both plasmids are realistic models for studying the exosporium from spores of B. anthracis. A number of loosely adsorbed proteins were identified from amino acid sequences determined by either nanospray-MS/MS or N-terminal sequencing. Salt and detergent washing of the exosporium fragments removed these and revealed proteins that are likely to represent structural/integral exosporium proteins. Seven proteins were identified in washed exosporium: alanine racemase, inosine hydrolase, ExsF, CotY, ExsY, CotB and a novel protein, named ExsK. CotY, ExsY and CotB are homologues of Bacillus subtilis outer spore coat proteins, but ExsF and ExsK are specific to B. anthracis and other members of the Bacillus cereus group.


Subject(s)
Bacillus/chemistry , Bacillus/physiology , Bacterial Proteins/isolation & purification , Amino Acid Sequence , Bacillus/genetics , Bacillus anthracis/chemistry , Bacillus anthracis/genetics , Bacillus anthracis/physiology , Bacillus anthracis/ultrastructure , Bacterial Proteins/chemistry , Electrophoresis, Polyacrylamide Gel , Enzymes/chemistry , Enzymes/isolation & purification , Molecular Sequence Data , Peptide Fragments , Spores, Bacterial/chemistry
14.
J Bacteriol ; 185(11): 3373-8, 2003 Jun.
Article in English | MEDLINE | ID: mdl-12754235

ABSTRACT

The exosporium is the outermost layer of spores of Bacillus cereus and its close relatives Bacillus anthracis and Bacillus thuringiensis. For these pathogens, it represents the surface layer that makes initial contact with the host. To date, only the BclA glycoprotein has been described as a component of the exosporium; this paper defines 10 more tightly associated proteins from the exosporium of B. cereus ATCC 10876, identified by N-terminal sequencing of proteins from purified, washed exosporium. Likely coding sequences were identified from the incomplete genome sequence of B. anthracis or B. cereus ATCC 14579, and the precise corresponding sequence from B. cereus ATCC 10876 was defined by PCR and sequencing. Eight genes encode likely structural components (exsB, exsC, exsD, exsE, exsF, exsG, exsJ, and cotE). Several proteins of the exosporium are related to morphogenetic and outer spore coat proteins of B. subtilis, but most do not have homologues in B. subtilis. ExsE is processed from a larger precursor, and the CotE homologue appears to have been C-terminally truncated. ExsJ contains a domain of GXX collagen-like repeats, like the BclA exosporium protein of B. anthracis. Although most of the exosporium genes are scattered on the genome, bclA and exsF are clustered in a region flanking the rhamnose biosynthesis operon; rhamnose is part of the sugar moiety of spore glycoproteins. Two enzymes, alanine racemase and nucleoside hydrolase, are tightly adsorbed to the exosporium layer; they could metabolize small molecule germinants and may reduce the sensitivity of spores to these, limiting premature germination.


Subject(s)
Bacillus anthracis/genetics , Bacillus cereus/genetics , Bacterial Proteins/genetics , Genes, Bacterial , Spores, Bacterial/genetics , Amino Acid Sequence , Bacillus anthracis/growth & development , Bacillus anthracis/metabolism , Bacillus cereus/growth & development , Bacillus cereus/metabolism , Bacterial Proteins/chemistry , Bacterial Proteins/metabolism , Molecular Sequence Data , Multigene Family , Sequence Analysis, DNA , Spores, Bacterial/growth & development , Spores, Bacterial/metabolism
15.
Biochim Biophys Acta ; 1645(1): 81-8, 2003 Jan 31.
Article in English | MEDLINE | ID: mdl-12535614

ABSTRACT

The histidine-proline-rich glycoprotein (HPRG) component of rabbit skeletal muscle AMP deaminase under denaturing and reducing conditions specifically binds to a Zn(2+)-charged affinity column and is only eluted with an EDTA-containing buffer that strips Zn(2+) from the gel. The isolated protein is homogeneous showing an apparent molecular weight (MW) of 95000 and the N-terminal sequence L-T-P-T-D-X-K-T-T-K-P-L-A-E-K-A-L-D-L-I, corresponding to that of rabbit plasma HPRG. The incubation with peptide-N-glycosidase F promotes the reduction of the apparent MW of isolated HPRG to 70000, characterizing it as a N-glycosylated protein. The separation from AMP deaminase of an 85-kDa component with a blocked N terminus is observed when the enzyme is applied to the Zn-charged column under nondenaturing conditions. On storage under reducing conditions, this component undergoes an 85- to 95-kDa transition yielding a L-T-P-T-D-X-K-T-T-K-P-L N-terminal sequence, suggesting that the shift in the migration on SDS/PAGE as well as the truncation of the protein at its N terminus are promoted by the reduction of a disulfide bond present in freshly isolated HPRG. The separation of HPRG induces a marked reduction in the solubility of AMP deaminase, strongly suggesting a role of HPRG in assuring the molecular integrity of the enzyme.


Subject(s)
AMP Deaminase/metabolism , Glycoproteins/isolation & purification , Muscle, Skeletal/metabolism , Proline/analogs & derivatives , AMP Deaminase/chemistry , AMP Deaminase/isolation & purification , Animals , Binding Sites , Chromatography, Affinity/methods , Electrophoresis, Polyacrylamide Gel , Enzyme Stability , Histidine/chemistry , Hydrogen-Ion Concentration , Muscle, Skeletal/chemistry , Nitric Oxide/chemistry , Nitrogen Oxides , Proline/chemistry , Protein Structure, Quaternary , Proteins/chemistry , Proteins/isolation & purification , Rabbits , Zinc
16.
J Biol Chem ; 278(5): 3176-84, 2003 Jan 31.
Article in English | MEDLINE | ID: mdl-12441349

ABSTRACT

The AMP deaminase-associated variant of histidine-proline-rich glycoprotein (HPRG) is isolated from rabbit skeletal muscle by a modification of the protocol previously used for the purification of AMP deaminase. This procedure yields highly pure HPRG suitable for investigation by x-ray absorption spectroscopy of the zinc-binding behavior of the protein. X-ray absorption spectroscopy analysis of a 2:1 zinc-HPRG complex shows that zinc is bound to the protein, most probably in a dinuclear cluster where each Zn(2+) ion is coordinated, on average, by three histidine ligands and one heavier ligand, likely a sulfur from a cysteine. 11 cysteines of HPRG from different species are totally conserved, suggesting that five disulfide bridges are essential for the proper folding of the protein. At least another cysteine is present at different positions in the histidine-proline-rich domain of HPRG in all species, suggesting that this cysteine is the candidate for zinc ligation in the muscle variant of HPRG. The same conclusion is likely to be true for the six histidines used by the protein as zinc ligands. The presence in muscle HPRG of a specific zinc-binding site permits us to envisage the addition of HPRG into the family of metallochaperones. In this view, HPRG may enhance the in vivo stability of metalloenzymes such as AMP deaminase.


Subject(s)
AMP Deaminase/metabolism , Muscle, Skeletal/enzymology , Proteins/chemistry , Proteins/metabolism , Zinc/metabolism , AMP Deaminase/isolation & purification , Acute-Phase Proteins/chemistry , Acute-Phase Proteins/metabolism , Animals , Binding Sites , Electrophoresis, Polyacrylamide Gel , Kinetics , Models, Molecular , Protein Conformation , Rabbits , Spectrophotometry, Ultraviolet
17.
J Biol Chem ; 277(51): 49841-9, 2002 Dec 20.
Article in English | MEDLINE | ID: mdl-12393891

ABSTRACT

Assembly of Escherichia coli cytochrome bd and periplasmic cytochromes requires the ATP-binding cassette transporter CydDC, whose substrate is unknown. Two-dimensional SDS-PAGE comparison of periplasm from wild-type and cydD mutant strains revealed that the latter was deficient in several periplasmic transport binding proteins, but no single major protein was missing in the cydD periplasm. Instead, CydDC exports from cytoplasm to periplasm the amino acid cysteine, demonstrated using everted membrane vesicles that transported radiolabeled cysteine inward in an ATP-dependent, uncoupler-independent manner. New pleiotropic cydD phenotypes are reported, including sensitivity to benzylpenicillin and dithiothreitol, and loss of motility, consistent with periplasmic defects in disulfide bond formation. Exogenous cysteine reversed these phenotypes and affected levels of periplasmic c-type cytochromes in cydD and wild-type strains but did not restore cytochrome d. Consistent with CydDC being a cysteine exporter, cydD mutant growth was hypersensitive to high cysteine concentrations and accumulated higher cytoplasmic cysteine levels, as did a mutant defective in orf299, encoding a transporter of the major facilitator superfamily. A cydD orf299 double mutant was extremely cysteine-sensitive and had higher cytoplasmic cysteine levels, whereas CydDC overexpression conferred resistance to high extracellular cysteine concentrations. We propose that CydDC exports cysteine, crucial for redox homeostasis in the periplasm.


Subject(s)
ATP-Binding Cassette Transporters/metabolism , Cysteine/metabolism , Escherichia coli Proteins , Escherichia coli/metabolism , ATP-Binding Cassette Transporters/chemistry , Adenosine Triphosphate/metabolism , Biological Transport , Cell Membrane/metabolism , Cell Movement , Cysteine/chemistry , Disulfides , Dithiothreitol/pharmacology , Dose-Response Relationship, Drug , Electrophoresis, Gel, Two-Dimensional , Electrophoresis, Polyacrylamide Gel , Lactose/metabolism , Mutation , Oxidation-Reduction , Penicillin G/pharmacology , Periplasm/metabolism , Phenotype , Protein Structure, Tertiary , Protein Transport , Subcellular Fractions , Time Factors
18.
Arch Microbiol ; 178(5): 358-69, 2002 Nov.
Article in English | MEDLINE | ID: mdl-12375104

ABSTRACT

cydDC genes encode a heterodimeric ABC transporter required for assembly of the membrane-bound cytochrome bd quinol oxidase and periplasmic cytochromes. Here, we demonstrate that overexpression of functional cydDC genes on a multicopy plasmid results in elevated levels of cytochromes b and d, but most notably formation in anaerobically grown cells of a novel haem-containing component P-574. The pigment has a distinctive absorbance at 574-579 nm and 448 nm in reduced minus oxidised spectra and renders over-producing cells reddish in colour. The highest levels of P-574 were observed in mutants (cydAB) in the structural genes for the polypeptides of cytochrome bd. P-574 is labile; its spectral signal is reduced in cells that are frozen-thawed or subjected to mechanical disruption. P-574 was not detected in cytoplasmic or periplasmic fractions and was predominantly associated with the cell membrane. P-574 did not bind CO or cyanide. Production of P-574 was dependent on haem biosynthesis indicating that it is a haem-containing molecule or derived from haem biosynthesis. These findings suggest that P-574 may result from association of a haem compound with overexpressed transporter subunits, but not with oxidase subunits, and are consistent with an intimate link between the transporter and haem processing during oxidase assembly.


Subject(s)
ATP-Binding Cassette Transporters/metabolism , Cytochromes/biosynthesis , Escherichia coli/metabolism , Heme/metabolism , ATP-Binding Cassette Transporters/genetics , Biological Transport/genetics , Escherichia coli/enzymology , Escherichia coli/genetics , Gene Expression Regulation, Bacterial , Heme/biosynthesis , Operon , Oxidoreductases/biosynthesis , Plasmids/genetics
19.
FEMS Microbiol Lett ; 211(1): 37-41, 2002 May 21.
Article in English | MEDLINE | ID: mdl-12052548

ABSTRACT

A GDH gene from Halobacterium salinarum has been cloned and sequenced and the publication assigns the sequence to the NADP+-glutamate dehydrogenase of this organism. We have expressed this gene in Escherichia coli and find that it encodes an NAD+-dependent glutamate dehydrogenase without activity towards NADP+. Further, peptide sequence from the two corresponding proteins supports the view that the deposited sequence is indeed that of the NAD+-dependent glutamate dehydrogenase. Sequence from the NAD+-dependent protein matches the published gene sequence, whereas sequence from the NADP+ glutamate dehydrogenase does not.


Subject(s)
Glutamate Dehydrogenase/genetics , Glutamate Dehydrogenase/metabolism , Halobacterium salinarum/enzymology , Halobacterium salinarum/genetics , NADP/metabolism , NAD/metabolism , Amino Acid Sequence , Cloning, Molecular , Electrophoresis, Polyacrylamide Gel , Glutamate Dehydrogenase/chemistry , Molecular Sequence Data , Protein Folding , Recombinant Proteins/chemistry , Recombinant Proteins/genetics , Recombinant Proteins/metabolism , Sequence Alignment , Solubility , Substrate Specificity
20.
J Agric Food Chem ; 50(6): 1593-601, 2002 Mar 13.
Article in English | MEDLINE | ID: mdl-11879042

ABSTRACT

Polyphenols are largely responsible for the astringency and "mouthfeel" of tea and wine by their interactions with basic salivary proline-rich proteins. Astringency arises from precipitation of polyphenol/peptide complexes, which is an important protective mechanism in animals that consume polyphenols. This paper presents biophysical studies of the interactions between chemically defined polyphenols and peptides. It is shown that intermolecular binding is dominated by stacking of polyphenolic rings onto planar hydrophobic surfaces and is strengthened by multiple cooperative binding of polyphenolic rings. Affinities weaken at higher temperatures and are unaffected by pH between pH 3.8 and 6.0. Measurements of self-diffusion rates for peptides with increasing concentrations of polyphenol demonstrate that peptides become increasingly coated with polyphenol. When the coating is sufficiently extensive to provide cooperative polyphenol bridges, the peptide dimerizes and precipitates. Light scattering measurements and electron microscopy indicate that the insoluble particles fall into two discrete size classes of ca. 80 and 500 nm diameter. The larger particles are favored at higher temperature and pH, suggesting that the particles are in a colloidal state, with the smaller particles being stabilized by charge repulsion between particles, and that precipitation of the complexes may be a phase separation process.


Subject(s)
Flavonoids , Peptides/metabolism , Phenols/metabolism , Polymers/metabolism , Amino Acid Sequence , Animals , Binding Sites , Chemical Precipitation , Diffusion , Dimerization , Hot Temperature , Humans , Hydrogen-Ion Concentration , Light , Magnetic Resonance Spectroscopy , Mice , Microscopy, Electron , Molecular Sequence Data , Peptides/chemistry , Phenols/chemistry , Polymers/chemistry , Polyphenols , Proline-Rich Protein Domains , Protein Binding , Proteins/chemistry , Proteins/metabolism , Salivary Proteins and Peptides/chemistry , Salivary Proteins and Peptides/metabolism , Scattering, Radiation , Tea/chemistry , Wine/analysis
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