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1.
Stem Cell Reports ; 16(11): 2718-2735, 2021 11 09.
Article in English | MEDLINE | ID: mdl-34678205

ABSTRACT

In Parkinson's disease (PD), substantia nigra (SN) dopaminergic (DA) neurons degenerate, while related ventral tegmental area (VTA) DA neurons remain relatively unaffected. Here, we present a methodology that directs the differentiation of mouse and human pluripotent stem cells toward either SN- or VTA-like DA lineage and models their distinct vulnerabilities. We show that the level of WNT activity is critical for the induction of the SN- and VTA-lineage transcription factors Sox6 and Otx2, respectively. Both WNT signaling modulation and forced expression of these transcription factors can drive DA neurons toward the SN- or VTA-like fate. Importantly, the SN-like lineage enriched DA cultures recapitulate the selective sensitivity to mitochondrial toxins as observed in PD, while VTA-like neuron-enriched cultures are more resistant. Furthermore, a proteomics approach led to the identification of compounds that alter SN neuronal survival, demonstrating the utility of our strategy for disease modeling and drug discovery.


Subject(s)
Dopaminergic Neurons/metabolism , Nerve Degeneration/genetics , Parkinson Disease/genetics , Pluripotent Stem Cells/metabolism , Substantia Nigra/metabolism , Ventral Tegmental Area/metabolism , Animals , Cell Differentiation/genetics , Cell Line , Dopaminergic Neurons/cytology , Human Embryonic Stem Cells/metabolism , Humans , Induced Pluripotent Stem Cells/metabolism , Mice , Models, Neurological , Mouse Embryonic Stem Cells/metabolism , Otx Transcription Factors/genetics , Otx Transcription Factors/metabolism , Parkinson Disease/metabolism , Parkinson Disease/pathology , Pluripotent Stem Cells/cytology , SOXD Transcription Factors/genetics , SOXD Transcription Factors/metabolism , Substantia Nigra/cytology , Ventral Tegmental Area/cytology
2.
PLoS Biol ; 19(4): e3001216, 2021 04.
Article in English | MEDLINE | ID: mdl-33914730

ABSTRACT

Lateral flow devices (LFDs) are quickly being implemented for use in large-scale population surveillance programs for SARS-CoV-2 infection in the United Kingdom. These programs have been piloted in city-wide screening in the city of Liverpool and are now being rolled out to support care home visits and the return home of University students for the Christmas break. Here, we present data on the performance of LFDs to test almost 8,000 students at the University of Birmingham between December 2 and December 9, 2020. The performance is validated against almost 800 samples using PCR performed in the University Pillar 2 testing lab and theoretically validated on thousands of Pillar 2 PCR testing results performed on low-prevalence care home testing samples. Our data show that LFDs do not detect infections presenting with PCR Ct values over 29 to 30 as determined using the Thermo Fisher TaqPath asssay. This may be of particular importance in detecting individuals that are either at the early, or late stages of infection, and reinforces the need for frequent, recurrent testing.


Subject(s)
COVID-19 Serological Testing , COVID-19/diagnosis , Carrier State/diagnosis , SARS-CoV-2/isolation & purification , COVID-19/epidemiology , COVID-19 Nucleic Acid Testing , Carrier State/epidemiology , Humans , Immunoassay , Mass Screening , Prevalence , SARS-CoV-2/genetics , SARS-CoV-2/immunology , Sensitivity and Specificity , United Kingdom/epidemiology , Universities
3.
J Infect Dis ; 223(10): 1666-1670, 2021 05 28.
Article in English | MEDLINE | ID: mdl-33580259

ABSTRACT

A SARS-CoV-2 variant B1.1.7 containing mutation Δ69/70 has spread rapidly in the United Kingdom and shows an identifiable profile in ThermoFisher TaqPath RT-qPCR, S gene target failure (SGTF). We analyzed recent test data for trends and significance. Linked cycle threshold (Ct) values for respiratory samples showed that a low Ct for ORF1ab and N were clearly associated with SGTF. Significantly more SGTF samples had higher inferred viral loads between 1×107 and 1×108. Our conclusion is that patients whose samples exhibit the SGTF profile are more likely to have high viral loads, which may explain higher infectivity and rapidity of spread.


Subject(s)
COVID-19/virology , Polymerase Chain Reaction/methods , SARS-CoV-2/physiology , Viral Load , COVID-19/epidemiology , Humans , Linear Models , Polymerase Chain Reaction/standards , SARS-CoV-2/classification , SARS-CoV-2/genetics , Taq Polymerase
5.
Nat Commun ; 11(1): 3111, 2020 06 19.
Article in English | MEDLINE | ID: mdl-32561725

ABSTRACT

Midbrain dopaminergic (DA) axons make long longitudinal projections towards the striatum. Despite the importance of DA striatal innervation, processes involved in establishment of DA axonal connectivity remain largely unknown. Here we demonstrate a striatal-specific requirement of transcriptional regulator Nolz1 in establishing DA circuitry formation. DA projections are misguided and fail to innervate the striatum in both constitutive and striatal-specific Nolz1 mutant embryos. The lack of striatal Nolz1 expression results in nigral to pallidal lineage conversion of striatal projection neuron subtypes. This lineage switch alters the composition of secreted factors influencing DA axonal tract formation and renders the striatum non-permissive for dopaminergic and other forebrain tracts. Furthermore, transcriptomic analysis of wild-type and Nolz1-/- mutant striatal tissue led to the identification of several secreted factors that underlie the observed guidance defects and proteins that promote DA axonal outgrowth. Together, our data demonstrate the involvement of the striatum in orchestrating dopaminergic circuitry formation.


Subject(s)
Axon Guidance/physiology , Axons/physiology , Corpus Striatum/growth & development , Dopaminergic Neurons/physiology , Intracellular Signaling Peptides and Proteins/metabolism , Nerve Tissue Proteins/metabolism , Animals , Carbocyanines/administration & dosage , Corpus Striatum/diagnostic imaging , Embryo, Mammalian , Female , Fluorescent Dyes/administration & dosage , Intracellular Signaling Peptides and Proteins/genetics , Intravital Microscopy , Mice, Knockout , Microfluidic Analytical Techniques , Microinjections , Microscopy, Confocal , Nerve Net/physiology , Nerve Tissue Proteins/genetics , Tissue Culture Techniques
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