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1.
ACS Omega ; 9(5): 5809-5818, 2024 Feb 06.
Article in English | MEDLINE | ID: mdl-38343953

ABSTRACT

Seven-membered homometallic FeIII7, MnIII3MnII4 coordination clusters were previously reported to be spin-frustrated molecular discs. Herein, a mixed bimetallic and mixed-valence dicationic [MnIIMnIII2NiII4(N3)4(hmp)10](NO3)2 (12+(NO3)2) was isolated in pure form without scrambling of Ni/Mn ions. It was structurally characterized by single-crystal X-ray single-crystal diffraction. The presence of MnII ions at the center of the disc has been confirmed by EPR measurements. The magnetic studies suggest that complex 12+(NO3)2 possesses spin frustration with spin ground states S = 17/2 and 19/2, which has been studied and supported by DFT calculation. The purity of 12+(NO3)2 was confirmed by powder XRD measurements, and the ratio of Ni:Mn = 4:3 was further determined by SEM-EDX analysis.

2.
Chem Commun (Camb) ; 60(9): 1148-1151, 2024 Jan 25.
Article in English | MEDLINE | ID: mdl-38189208

ABSTRACT

Reactions of o-carborane-fused bis-silylene 1 with isocyanate/isothiocyanate molecules furnished a series of SiN/SiS-heterocycles, which show distinct styles of cyclization and were theoretically studied.

3.
Chemistry ; 30(10): e202303355, 2024 Feb 16.
Article in English | MEDLINE | ID: mdl-38014513

ABSTRACT

Researchers have successfully isolated Si0 /Ge0 species, termed silylone and germylone, with two lone pairs of electrons on them. These elusive compounds have been stabilised in singlet ground states by using different donor base ligands. Driess et al. in particular have made strides in this area, isolating carborane-bis-silylene-stabilised silylone/germylone and their N+ /Pb analogues. Carborane (C2 B10 H10 ) plays a pivotal role as a redox-active ligand, converting from closo-carborane to nido-carborane with the addition of two electrons. Notably, anomalous oxidation of Si0 /Ge0 centres in carborane-bis-silylene-stabilised species to SiI /GeI has been reported, resulting in the formation of dimeric SiI -SiI /GeI -GeI di-cationic units. The energy decomposition analysis coupled with natural orbital for chemical valence (EDA-NOCV) study focuses on the carborane-bis-silylene ligand in the free state, and its three other species, including silylone/germylone species. Interestingly, it reveals that the carborane unit in an anionic doublet state tends to form one electron-sharing bond and one dative bond with the counter fragment in its cationic doublet state. This helps us to rationalise why the carborane unit undergoes intramolecular electronic rearrangements leading to the formation of a di-anionic carborane unit with a significantly elongated C-C bond (2.38-2.68 Å) and undergoes unusual oxidation of Si0 /Ge0 to SiI /GeI .

4.
J Comput Chem ; 45(11): 804-819, 2024 Apr 30.
Article in English | MEDLINE | ID: mdl-38135467

ABSTRACT

The inability of p-block elements to participate in π-backbonding restricts them from activating small molecules like CO, H2 , and so forth. However, the development of the main group metallomimetics became a new pathway, where the main-group elements like boron can bind and activate small molecules like CO and H2 . The concept of the frustrated Lewis pair, Boron-Boron multiple bonds, and borylene are previously illustrated. Some of these reported classes of boron species can mimic the jobs of the metal complexes. Hence, we have theoretically studied the binding of CO/N2 molecules at B-center of elusive species like sila/germa boryne stabilized by donor base ligands (cAAC)BE(Me)(L), where E  Si, L  cAACMe , NHCMe , PMe3 , E  Ge, L  cAACMe and (NHCMe )BE(Me)(cAACMe )). The substitutional analogues of (cAACR )BSiR1 (cAAC) and E  P, L  cAACMe ) have been studied by density functional theory (DFT), natural bond orbital, QTAIM calculations and energy decomposition analysis (EDA) coupled with natural orbital for chemical valence (NOCV) analyses. The computed bond dissociation energy and inner stability analyses by the EDA-NOCV method showed that the CO molecule can bind at the B-center of the above-mentioned species due to stronger σ-donor ability while binding of N2 has been theoretically predicted to be weak. The energy barrier for the CO binding is estimated to be 13-14 kcal/mol by transition state calculation. The change of partial triple bond character to single bond nature of the BSi bond and the bending of CBSi bond angle of sila-boryne species are the reason for the activation energy. Our study reveals the ability of such species to bind and activate the CO molecule to mimic the transition metal-containing complexes. We have additionally shown that binding of Fe(CO)4 and Ni(CO)3 is feasible at Si-center after binding of CO at the B-center.

5.
J Comput Chem ; 44(28): 2184-2211, 2023 Oct 30.
Article in English | MEDLINE | ID: mdl-37530758

ABSTRACT

Cyclopropane ring is a very common motif in organic/bio-organic compounds. The chemical bonding of this strained ring is taught to all chemistry students. This three-membered cyclic, C3 ring is quite reactive which has attracted both, synthetic and theoretical chemists to rationalize/correlate its stability and bonding with its reactivity and physical properties over a century. There are a few bonding models (mainly the Bent-Bond model and Walsh model) of this C3 ring that are debated to date. Herein, we have carried out energy decomposition analysis coupled with natural orbital for chemical valence (EDA-NOCV) to study the two most reactive bonds of cyclopropane rings of 49 different organic compounds containing different functional groups to obtain a much deeper bonding insight toward a more general bonding model of this class of compounds. The EDA-NOCV analyses of fragment orbitals and susequent bond formation revealed that the nature of the CC bond of the cyclopropane (splitting two bonds at a time out of three CC bonds) ring is preferred to form two dative covalent CC bonds (between a singlet olefin-fragment and an excited singlet carbene-fragment with a vacant sp2 orbital and a filled p-orbital) for the majority (37/49) of compounds over two covalent electron sharing bonds in some (7/49) compounds (between an excited triplet olefin and triplet carbene), while a few (5/49) compounds show flexibility to adopt either the electron sharing or dative covalent bond as both are equally possible. The effects of functional groups on the nature of chemical bond in cyclopropane rings have been studied in detail. Our bonding analyses are in line with the QTAIM analyses which produce small negative values of the Laplacian, significantly positive values of bond ellipticity, and accumulation of electron densities around the ring critical point of C3 -rings. These corresponding QTAIM parameters of C3 -rings are quite different for CC single bonds of normal hydrocarbons as expected. The chemical bonding in the majority of cyclopropane rings can be very similar to those of metal-olefin systems.

6.
Dalton Trans ; 52(42): 15326-15333, 2023 Oct 31.
Article in English | MEDLINE | ID: mdl-37387215

ABSTRACT

The present work describes the dynamic magnetic properties of the complex [(CpAr3)4DyIII2Cl4K2]·3.5(C7H8) (1), synthesized by employing a tri-aryl-substituted cyclopentadienyl ligand (CpAr3), [4,4'-(4-phenylcyclopenta-1,3-diene-1,2-diyl)bis(methylbenzene) = CpAr3H]. Each Dy(III)-metallocene weakly couples via K2Cl4, displaying slow relaxation of magnetization below 14.5 K under zero applied dc field via KD3 energy levels with an energy barrier of 136.9/133.7 cm-1 on the Dy sites. The single-ion axial anisotropy energy barrier is reduced by geometrical distortion due to the coordination of two chloride ions at each Dy centre.

7.
J Comput Chem ; 44(19): 1673-1689, 2023 Jul 15.
Article in English | MEDLINE | ID: mdl-37177883

ABSTRACT

Stabilizing the exotic chemical species possessing multiple bonds is often extremely challenging due to insufficient orbital overlap, especially involving one heavier element. Bulky aryl groups and/or carbene as ligand have previously stabilized the SiSi, GeGe, and BB triple bonds. Herein, theoretical calculations have been carried out to shed light on the stability and bonding of elusive silaboryne/germaboryne (Si/GeB triple bond) stabilized by donor base ligands ((cAAC)BE(Me)(L); E = Si, L = cAACMe , NHCMe , PMe3 ; E = Ge, L = cAACMe ). The heavier analogues (Sn, Pb) have been further studied for comparison. Additionally, the effects of bulky substituents at the Si and N atoms on the structural parameters and stability of those species have been investigated. Energy decomposition analysis coupled with natural orbital for chemical valence (EDA-NOCV; for Si) showed that cAAC/NHC ligands could stabilize the exotic BSi-Me species more efficiently than PMe3 ligands. The BSi partial triple bond of the corresponding species possesses a mixture of one covalent electron sharing BSi σ-bond and two dative π-bonds (B ← Si, B → Si).


Subject(s)
Electrons , Ligands
8.
J Comput Chem ; 44(1): 43-60, 2023 01 05.
Article in English | MEDLINE | ID: mdl-36169176

ABSTRACT

The factors/structural features which are responsible for the binding, activation and reduction of N2 to NH3 by FeMoco of nitrogenase have not been completely understood well. Several relevant model complexes by Holland et al. and Peters et al. have been synthesized, characterized and studied by theoretical calculations. For a matter of fact, those complexes are much different than real active N2 -binding Fe-sites of FeMoco, which possesses a central C(4-) ion having an eight valence electrons as an µ6 -bridge. Here, a series of [(S3 C(0))Fe(II/I/0)-N2 ]n- complexes in different charged/spin states containing a coordinated σ- and π-donor C(0)-atom which possesses eight outer shell electrons [carbone, (Ph3 P)2 C(0); Ph3 P→C(0)←PPh3 ] and three S-donor sites (i.e. - S-Ar), have been studied by DFT, QTAIM, and EDA-NOCV calculations. The effect of the weak field ligand on Fe-centres and the subsequent N2 -binding has been studied by EDA-NOCV analysis. The role of the oxidation state of Fe and N2 -binding in different charged and spin states of the complex have been investigated by EDA-NOCV analyses. The intrinsic interaction energies of the Fe-N2 bond are in the range from -42/-35 to -67 kcal/mol in their corresponding ground states. The S3 C(0) donor set is argued here to be closer to the actual coordination environment of one of the six Fe-centres of nitrogenase. In comparison, the captivating model complexes reported by Holland et al. and Peter et al. possess a stronger π-acceptor C-ring (S2 Cring donor, π-C donor) and stronger donor set like CP3 (σ-C donor) ligands, respectively.


Subject(s)
Carbon , Nitrogenase , Nitrogenase/chemistry , Carbon/chemistry , Nitrogen/chemistry , Ligands , Iron/chemistry
9.
Chem Asian J ; 18(2): e202201041, 2023 Jan 17.
Article in English | MEDLINE | ID: mdl-36420907

ABSTRACT

Two new series of air stable compounds of cAACX = fluorene/indene (X = Me2 , Et2 , Cy) [cAAC = cyclic (alkyl) amino carbene] have been isolated and well characterized by X-ray single crystal diffraction, photoluminescence, cyclic voltammogram (CV) and electron paramagnetic resonance (EPR) studies. Fluorescence studies reveals green light emission of cAAC bonded fluorene, whereas free fluorene generally displays a violet emission. Interestingly, the sterically crowded cAAC-fluorene analogue display solvatochromism and CF3 CO2 H sensing in solution. CV of the these compounds show a quasi-reversible electron transfer process, indicating the functionalization of fluorene/indene with radical anionic form of carbene, confirmed by CV/EPR measurements. DFT/TDDFT calculations and energy decomposition analysis coupled with natural orbital for chemical valence (EDA-NOCV) have been carried out to study different aspects of bonding and electronic transitions. Such a class of redox active and thermally stable organic molecules may be suitable for molecule based spin memory devices in future.


Subject(s)
Indenes , Luminescence , Oxidation-Reduction , Fluorenes , Hydrogen-Ion Concentration
10.
ACS Omega ; 7(35): 31577-31590, 2022 Sep 06.
Article in English | MEDLINE | ID: mdl-36092593

ABSTRACT

The FeVco cofactor of nitrogenase (VFe7S8(CO3)C) is an alternative in the molybdenum (Mo)-deficient free soil living azotobacter vinelandii. The rate of N2 reduction to NH3 by FeVco is a few times higher than that by FeMoco (MoFe7S9C) at low temperature. It provides a N source in the form of ammonium ions to the soil. This biochemical NH3 synthesis is an alternative to the industrial energy-demanding production of NH3 by the Haber-Bosch process. The role of vanadium has not been clearly understood yet, which has led chemists to come up with several stable V-N2 complexes which have been isolated and characterized in the laboratory over the past three decades. Herein, we report the EDA-NOCV analyses of dinitrogen-bonded stable complexes V(III/I)-N2 (1-4) to provide deeper insights into the fundamental bonding aspects of V-N2 bond, showing the interacting orbitals and corresponding pairwise orbital interaction energies (ΔE orb(n)). The computed intrinsic interaction energy (ΔE int) of V-N2-V bonds is significantly higher than those of the previously reported Fe-N2-Fe bonds. Covalent interaction energy (ΔE orb) is more than double the electrostatic interaction energy (ΔE elstat) of V-N2-V bonds. ΔE int values of V-N2-V bonds are in the range of -172 to -204 kcal/mol. The V → N2 ← V π-backdonation is four times stronger than V ← N2 → V σ-donation. V-N2 bonds are much more covalent in nature than Fe-N2 bonds.

11.
Chem Asian J ; 17(19): e202200572, 2022 Oct 04.
Article in English | MEDLINE | ID: mdl-35927965

ABSTRACT

Metal ions-based inorganic-organic hybrid composites are often reported acting as good to excellent catalysts with various substrate scopes under milder reaction conditions. The active catalyst of a catalytic cycle is sometimes proposed to be a short-lived reactive intermediate species. A three coordinate (L-Me)Ni(II) intermediate species [L-Me=O2 N donor dianionic ligand] can bind with short-lived carbene-ester ligands to produce four coordinate Ni(II) species which can act as carbene transfer intermediate under suitable reaction conditions for C-H functionalization and/or cyclopropanation reactions. The dissociation of phosphine (PPh3 ) from the Ni(II) centre of (L-Me)Ni(II)(PPh3 ) (1 a) and binding of short lived carbene esters (:CR1 -CO2 R2 ; R1 =H, Ph; R2 =aliphatic group; 2-4 and other carbenes; 5-10) to Ni(II) rationalize the phenomenon in solution. Air stable Ni(0)-olefin complexes/intermediates (12-18) have recently been shown to mediate a variety of organic transformations. This analysis will further help organic/organometallic chemists to rationalize the design and synthesis of future catalysts for organic transformation. EDA-NOCV calculations have been performed to shed light on the stability and bonding of those species. Additionally, our analysis provides a proper reason why the analogous (L-Me)Pd-PPh3 complex (1 b) does not dissociate in solution and hence, a similar catalytic product has not been isolated from identical reaction conditions. The stability and the labile nature of Ni(II/0) complexes have been investigated by state-of-the-art EDA-NOCV analyses.

12.
J Comput Chem ; 43(23): 1543-1560, 2022 Sep 05.
Article in English | MEDLINE | ID: mdl-35861589

ABSTRACT

Arenes [C6 H3 R(TMS)(OTf); also called benzyne/aryne precursors] containing inter-related leaving groups Me3 Si (TMS) and CF3 SO3 (OTf) on the adjacent positions (1,2-position) are generally converted to their corresponding aryne-intermediates via the addition of fluoride anion (F- ) and subsequent elimination of TMS and OTf groups. This reaction is believed to proceed via the formation of an anionic intermediate [C6 H4 (TMS-F)(OTf)]- . The EDA-NOCV analysis (EDA-NOCV = energy decomposition analysis-natural orbital for chemical valence) of over 35 such precursors of varied types have been reported to reveal bonding and stability of CAr Si and COTf bonds. EDA-NOCV showed that the nature of the CAr Si bond of C6 H3 R(TMS)(OTf) can be expressed as both dative and electron sharing [CAr Si, CAr →Si]. The CAr OTf bond, on the other hand, can be described explicitly as dative [CAr ←OTf]. The nature of CAr Si bond of [C6 H4 (TMS-F)(OTf)]- exclusively changes to covalent dative σ-bond CAr →S(Me)3F on the attachment of F- to the TMS group of C6 H4 (TMS)(OTf). Introduction of σ-electron withdrawing group (like OMe, NMe2 , and NO2 ) to the ortho-position of the TMS group of functionalized arynes C6 H3 R(TMS)(OTf) prefer to have a covalent dative σ-bond (CAr →Si) over an electron-sharing covalent σ-bond (CAr Si). If this σ-electron withdrawing group is shifted from ortho-position to meta- and para-positions, then the preference for a dative bond decreases significantly, implying that the electronic effect on the nature of chemical bonds affects through bond paths. This effect dies with distance, similar to the well-known inductive effect.

13.
RSC Adv ; 12(7): 4081-4093, 2022 Jan 28.
Article in English | MEDLINE | ID: mdl-35425464

ABSTRACT

Recently, dinitrogen (N2) binding and its activation have been achieved by non-metal compounds like intermediate cAAC-borylene as (cAAC)2(B-Dur)2(N2) [cAAC = cyclic alkyl(amino) carbene; Dur = aryl group, 2,3,5,6-tetramethylphenyl; B-Dur = borylene]. It has attracted a lot of scientific attention from different research areas because of its future prospects as a potent species towards the metal free reduction of N2 into ammonia (NH3) under mild conditions. Two (cAAC)(B-Dur) units, each of which possesses six valence electrons around the B-centre, are shown to accept σ-donations from the N2 ligand (B ← N2). Two B-Dur further provide π-backdonations (B → N2) to a central N2 ligand to strengthen the B-N2-B bond, providing maximum stability to the compound (cAAC)2(B-Dur)2(N2) since the summation of each pair wise interaction accounted for the total stabilization energy of the molecule. (cAAC)(B-Dur) unit is isolobal to cAAC-E (E = Si, Ge) fragment. Herein, we report on the stability and bonding of cAAC-E bonded N2-complex (cAAC-E)2(N2) (1-2; Si, Ge) by NBO, QTAIM and EDA-NOCV analyses (EDA-NOCV = energy decomposition analysis coupled with natural orbital for chemical valence; QTAIM = quantum theory of atoms in molecule). Our calculation suggested that syntheses of elusive (cAAC-E)2(N2) (1-2; Si, Ge) species may be possible with cAAC ligands having bulky substitutions adjacent to the CcAAC atom by preventing the homo-dimerization of two (cAAC)(E) units which can lead to the formation of (cAAC-E)2. The formation of E[double bond, length as m-dash]E bond is thermodynamically more favourable (E = Si, Ge) over binding energy of N2 inbetween two cAAC-E units.

14.
J Comput Chem ; 43(11): 757-777, 2022 Apr 30.
Article in English | MEDLINE | ID: mdl-35289411

ABSTRACT

Binding of dinitrogen (N2 ) to a transition metal center (M) and followed by its activation under milder conditions is no longer impossible; rather, it is routinely studied in laboratories by transition metal complexes. In contrast, binding of N2 by main group elements has been a challenge for decades, until very recently, an exotic cAAC-borylene (cAAC = cyclic alkyl(amino) carbene) species showed similar binding affinity to kinetically inert and non-polar dinitrogen (N2 ) gas under ambient conditions. Since then, N2 binding by short lived borylene species has made a captivating news in different journals for its unusual features and future prospects. Herein, we carried out different types of DFT calculations, including EDA-NOCV analysis of the relevant cAAC-boron-dinitrogen complexes and their precursors, to shed light on the deeper insight of the bonding secret (EDA-NOCV = energy decomposition analysis coupled with natural orbital for chemical valence). The hidden bonding aspects have been uncovered and are presented in details. Additionally, similar calculations have been carried out in comparison with a selected stable dinitrogen bridged-diiron(I) complex. Singlet cAAC ligand is known to be an exotic stable species which, combined with the BAr group, produces an intermediate singlet electron-deficient (cAAC)(BAr) species possessing a high lying HOMO suitable for overlapping with the high lying π*-orbital of N2 via effective π-backdonation. The BN2 interaction energy has been compared with that of the FeN2 bond. Our thorough bonding analysis might answer the unasked questions of experimental chemists about how boron compounds could mimic the transition metal of dinitrogen binding and activation, uncovering hidden bonding aspects. Importantly, Pauling repulsion energy also plays a crucial role and decides the binding efficiency in terms of intrinsic interaction energy between the boron-center and the N2 ligand.

15.
J Phys Chem A ; 126(6): 845-858, 2022 Feb 17.
Article in English | MEDLINE | ID: mdl-35119854

ABSTRACT

The donor ligand bonded singlet (L)2Si2C containing a bent Si2C unit in the middle has been studied by theoretical quantum mechanical calculations (NBO, QTAIM, EDA-NOCV analyses) [L = cAAC, NHC, Me3P]. EDA-NOCV analysis suggests that this Si2C is possible to stabilize by a pair of donor base ligands. The bond dissociation energy of the Si2C fragment is endothermic (85-45 kcal/mol) with a sufficiently high intrinsic interaction energy (ΔEint = -89 to -48 kcal/mol). Fifty percent of the total stabilization energy arises from electrostatic interactions, and nearly 45% is contributed by covalent orbital interaction between Si2C and (L)2 fragments in their singlet states. 75-80% of the orbital interaction energy is contributed by two sets of σ-donation L → SiCSi ← L. The π-back-donation is only 15-10%. The dispersion energy is not negligible (3-5%). The interaction energy is highest for 1 (L = cAAC) among three compounds. Additionally, (cAAC)2Si2C-Ni(CO)3 (4) has been studied. The interaction energy between 1 and Ni(CO)3 is nearly 61 kcal/mol with the major contribution coming from donation of electron cloud from electron rich Si2C backbone to empty hybrid orbital of Ni(CO)3 fragment. A sufficiently strong π-back-donation from (OC)3Ni to Si2C has also been identified.

16.
Dalton Trans ; 51(5): 1791-1805, 2022 Feb 01.
Article in English | MEDLINE | ID: mdl-35023531

ABSTRACT

(Tip)2SbCl (1, Tip = 2,4,6-triisopropylphenyl) has been utilized as a precursor for the synthesis of the distibane (Tip)4Sb2 (4) via one-electron reduction using KC8. The two-electron reduction of 1 and 4 afforded the novel trinuclear antimonide cluster [K3((Tip)2Sb)3(THF)5] (6). Changing the reducing agent from KC8 to a different alkali metal resulted in the solid-state isolation of corresponding stable dimeric alkali metal antimonides with the general formula [M2((Tip)2Sb)2(THF)p-x(tol)x] (M = Li (14), Na (15), Cs (16)). In this report, different aspects of the various reducing agents [K metal, KC8, and [K2(Naph)2(THF)]] used have been studied, correlating the experimental observations with previous reports. Additional reactivity studies involving 1 and AgNTf2 (Tf = trifluoromethanesulfonyl) afforded the corresponding antimony cation (Tip)2Sb+NTf2- (19). The Lewis acidic character of 19 has been unambiguously proved via treatment with Lewis bases to produce the corresponding adducts 20 and 21. Interestingly, the precursors 1 and 4 have been observed to be highly luminescent, emitting green light under short-wavelength UV radiation. All the reported compounds have been characterized via NMR, UV-vis, mass spectrometry, and single-crystal X-ray diffraction analysis. Cyclic voltammetry (CV) studies of 1 in THF showed possible two electron reduction, suggesting the in situ generation of the corresponding radical-anion intermediate 1˙- and its subsequent conversion to the monomeric intermediate (Tip)2Sb- (5) upon further reduction. 5 undergoes oligomerization in the solid state to produce 6. The existence of 1˙- was proved using electron paramagnetic resonance (EPR) spectroscopy in solution. CV studies of 6 suggested its potential application as a reducing agent, which was further proved via the conversion of Tip-PCl2 to trimeric (Tip)3P3 (17), and cAACP-Cl (cAAC = cyclic alkyl(amino)carbene) to (cAAC)2P2 (18) and 4, utilizing 6 as a stoichiometric reducing agent.

17.
ACS Omega ; 6(49): 33389-33397, 2021 Dec 14.
Article in English | MEDLINE | ID: mdl-34926888

ABSTRACT

The binding of the dinitrogen molecule to the metal center is the first and crucial step toward dinitrogen activation. Favorable interaction energies are desired by chemists and biochemists to study model complexes in the laboratory. An electrochemically reduced form of a previously isolated sulfur-bridged Ni3S8 complex is inferred to bind N2 at multiple Ni centers, and this bonded N2 undergoes reductive protonation to produce hydrazine (N2H4) as the product in the presence of a proton donor. Density functional theory (DFT) calculations and quantum theory of atoms in molecules (QTAIM) analysis have been carried out to shed light on the nature of N2 binding to an anionic trinuclear Ni3S8 complex. Additionally, energy decomposition analysis with the combination of natural orbital for chemical valence (EDA-NOCV) analysis has been performed to estimate the pairwise interaction energies between the Ni center and the N2 molecule under experimental conditions.

18.
ACS Omega ; 6(49): 33932-33942, 2021 Dec 14.
Article in English | MEDLINE | ID: mdl-34926940

ABSTRACT

The MoFe7S9C1- unit of the nitrogenase cofactor (FeMoco) attracts chemists and biochemists due to its unusual ability to bind aerial dinitrogen (N2) at ambient condition and catalytically convert it into ammonia (NH3). The mode of N2 binding and its reaction pathways are yet not clear. An important conclusion has been made based on the very recent synthesis and isolation of model Fe(I/0)-complexes with sulfur-donor ligands under the cleavage of one Fe-S bond followed by binding of N2 at the Fe(0) center. These complexes are structurally relevant to the nitrogenase cofactor (MoFe7S9C1-). Herein, we report the EDA-NOCV analyses and NICS calculations of the dinitrogen-bonded dianionic complex Fe0-N2 (1) (having a CAr ← Fe π-bond) and monoanionic complex FeI-N2 (2) (having a CAr-Fe σ-bond) to provide a deeper insight into the Fe-N2 interacting orbitals and corresponding pairwise interaction energies (EDA-NOCV = energy decomposition analysis coupled with natural orbital for chemical valence; NICS = nucleus-independent chemical shifts). The orbital interaction in the Fe-N2 bond is significantly larger than Coulombic interactions, with major pairwise contributions coming from d(Fe) orbitals to the empty π* orbitals of N2 (three Fe → N2). ΔE int values are in the range of -61 to -77 kcal mol-1. Very interestingly, NICS calculations have been carried out for the fragments before and after binding of the N2 molecule. The computed σ- and π-aromaticity values are attributed to the position of the Fe atoms, oxidation states of Fe centers, and Fe-C bond lengths of these two complexes.

19.
ACS Omega ; 6(28): 17798-17810, 2021 Jul 20.
Article in English | MEDLINE | ID: mdl-34308015

ABSTRACT

The Donor base ligand-stabilized cyclopentadienyl-carbene compounds L-C5H4 (L = H2C, aAAC; (CO2Me)2C, Py; aNHC, NHC, PPh3; SNHC; aAAC = acyclic alkyl(amino) carbene, aNHC = acyclic N-hetero cyclic carbene, NHC = cyclic N-hetero cyclic carbene, SNHC = saturated N-hetero cyclic carbene, Py = pyridine) (1a-1d, 2a-2c, 3) have been theoretically investigated by energy decomposition analysis coupled with natural orbitals for chemical valence calculation. Among all these compounds, aNHC=C5H4 (2a) and Ph3P=C5H4 (2c) had been reported five decades ago. The bonding analysis of compounds with the general formula L=C5H4 (1a-1d) [L = (H2C, aAAC, (CO2Me)2C, Py] showed that they possess one electron-sharing σ bond and electron-sharing π bond between L and C5H4 neutral fragments in their triplet states as expected. Interestingly, the bonding scenarios have completely changed for L = aNHC, NHC, PPh3, SNHC. The aNHC analogue (2a) prefers to form one electron-sharing σ bond (CL-CC5H4) and dative π bond (CL ← CC5H4) between cationic (aNHC)+ and anionic C5H4 - fragments in their doublet states. Similar bonding scenarios have been observed for NHC (2b) and PPh3 (2c) (PL-CC5H4, PL ← CC5H4) analogues. In contrast, the SNHC and C5H4 neutral fragments of SNHC=C5H4 (3) prefer to form a dative σ bond (CSNHC → CC5H4) and a dative π bond (CSNHC ← CC5H4) in their singlet states. The pyridine analogue 1d is quite different from 2c from the bonding and aromaticity point of view. The nucleus-independent chemical shifts of all the abovementioned species (1-3) corresponding to aromaticity have been computed using the gauge-independent atomic orbital approach.

20.
J Comput Chem ; 42(16): 1159-1177, 2021 Jun 15.
Article in English | MEDLINE | ID: mdl-33856693

ABSTRACT

The stability and bonding of a series of hetero-diatomic molecules with general formula (cAAC)EM(CO)n , where cAAC = cyclic alkyl(amino) carbene; E = group 14 elements (C, Si, and Ge); M = transition metal (Ni, Fe, and Cr) have been studied by quantum chemical calculations using density functional theory (DFT) and energy decomposition analysis-natural orbital chemical valence (EDA-NOCV). The equilibrium geometries were calculated at the BP86/def2-TZVPP level of theory. The tri-coordinated group 14 complex (1a, 4a, and 7a) in which one of the CO groups is migrated to the central group 14 element from adjacent metal is theoretically found to be more stable when the central atom (E) is carbon. On the other hand, the two-coordinate group 14 element containing metal-complexes (2, 5, 8, 3, 6, and 9) are found to be more stable with their corresponding heavier analogues. The electronic structures of all the molecules have been analyzed by molecular orbital, topological analysis of electron density and natural bond orbital (NBO) analysis at the M06/def2-TZVPP//BP86/def2-TZVPP level of theory. The nature of the cAACE and EM bonds has been studied by EDA-NOCV calculations at BP86-D3(BJ)/TZ2P level of theory. The EDA analysis suggests that the bonding of cAACC(CO) can be best represented by electron sharing σ and π interactions, whereas, C(CO)M(CO)n-1 by dative σ and π interactions. On the other hand, EDA-NOCV calculations suggests both dative σ and π interactions for cAACE and EM(CO)n bonds of the corresponding Si and Ge analogues having stronger σ- and relatively weaker π-bonds. The topological analysis of electron density supports the closed-shell interaction for the Si and Ge complexes and open-shell interaction for the carbon complexes. The calculated proton affinity and hydride affinity values corroborated well with the present bonding description. This class of complexes might act as efficient future catalysts for different organic transformations due to the presence of electron rich group 14 element and metal carbonyl.

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