Microbial ecology and predicted metabolic pathways in various oral environments from patients with acute endodontic infections.

AIM: To assess in a cross-sectional clinical study the effect of antibiotics on the diversity, structure and metabolic pathways of bacterial communities in various oral environments in patients with acute primary infections. METHODOLOGY: Samples of saliva (SA), supragingival biofilm (SB) and from the pulp cavity (PC) were collected from teeth with acute primary infections and then grouped according to previous use of antibiotics (NoAtb = no antibiotics [n = 6]; Atb = antibiotics [n = 6]). DNA sequencing was conducted using MiSeq (Illumina, San Diego, CA, USA). The V1-V3 hyper-variable region of the 16S rRNA gene was amplified. A custom Mothur pipeline was used for 16S rRNA processing. Subsequent analyses of the sequence dataset were performed in R (using vegan, phyloseq and ggplot2 packages) or QIIME. RESULTS: Twelve patients aged from 22 to 56 years were recruited. Participants in the Atb group had taken the beta-lactamics amoxicillin (5/6) or cephalexin (1/6) for 2-3 days. A total of 332 bacterial taxa (OTUs) were identified, belonging to 120 genera, 60 families and nine phyla. Firmicutes (41%) and Bacteroidetes (38%) were the most abundant phyla in all samples. Taxa clustered significantly by oral site (PCoA analysis; P < 0.05, ANOSIM). Use of antibiotics had little effect on this clustering. However, SA, SB and PC had different degrees of richness, diversity and evenness. The greatest diversity was observed in SB samples and the least diversity was observed in PC samples. Metabolic prediction identified 163 pathways and previous use of antibiotics had a major effect on the estimated functional clustering in SA and PC samples. CONCLUSION: The ecological niche had a strong influence on the bacterial content of samples from various oral sites. Previous exposure to antibiotics may exert an effect on the phylogenetic composition of SA. Metabolic pathways appear to be modulated by antimicrobial agents in SA and PC samples. The dynamics of host/microbial interactions in the apical region and the functional ecology of the infected pulp cavity should be revisited.

Prevotella strains and lactamic resistance gene distribution in different oral environments of children with pulp necrosis.

AIM: To determine the presence of Prevotella species, the cfxA/cfxA2, blaZ and blaTEM genes associated with resistance to lactamic agents in different oral niches of children with pulp necrosis. METHODOLOGY: Children with pulp necrosis in primary teeth had samples of saliva, supragingival, pulp chamber and root canal biofilms collected and tested for Prevotella species (P. intermedia, P. nigrescens, P. tannerae) and for beta-lactam resistance genes (cfxA/cfxA2, blaZ and blaTEM). The presence of bacterial DNA was examined through PCR, with a specific primer directed to the 16S rRNA gene. Specific primers were used to detect the Prevotella species and beta-lactam resistance genes. The chi-square test was used to analyse associations between the presence of bacteria and clinical variables. The Cochran's Q test was used to assess whether the proportion of gene detection is the same between different sites. RESULTS: Thirty-two teeth were sampled from 27 patients with a mean age of 5.5 years (±1.76). The total detection rate of Prevotella strains was 29.1%, 25%, 21.8% and 32.29% in saliva, supragingival, pulp chamber and root canal samples, respectively. P. nigrescens was the most commonly detected species in all oral niches. The previous use of antibiotics was associated with detection of P. nigrescens in saliva (P = 0.03). Pain was associated with the presence of P. nigrescens (P = 0.04) and P. tannerae (P = 0.01) in pulp chamber biofilm. blaTEM was detected in the four oral niches, being more frequent (23.8%) in supragingival biofilm (Cochran's Q test, P = 0.04). The presence of P. intermedia in SB and PC was associated with the detection of blaTEM in saliva (P = 0.04). The cfxA/cfxA2 and blaZ genes were not detected in any of the four oral niches. CONCLUSIONS: The oral cavity of children with pulp necrosis had a variable distribution of Prevotella strains in different niches. Saliva, supragingival biofilm, pulp chamber and root canals of primary teeth with necrotic pulps can harbour resistance genes to beta-lactams agents.

Mosquito species occurrence in association with landscape composition in green urban areas / Ocorrência de espécies de mosquitos associada à composição de paisagem em áreas verdes urbanas

Abstract Aedes aegypti prefers densely populated habitats, but has been shown to explore less anthropogenic environments. We investigated composition of the abundance of mosquitoes in forested areas and assessed relationships between species occurrences and different types of land use and land cover at three spatial scales (100m, 500m and 1000m). Mosquitoes were collected from October 2012 to March 2013 using oviposition traps. We collected 4,179 mosquitoes in total including at least 10 species. Aedes albopictus and Limatus durhami were eudominant species, representing 90% of all collected individuals. We found intraspecific differences in response to land use and land cover, and species response patterns were similar at all spatial scales. Ae. albopictus relative abundance was associated with urbanized areas, while Li. durhami, Haemagogus leucocelaenus and Toxorhynchites sp., abundances were associated with native forest. Aedes aegypti were found in five of the eight areas studied, including in an Atlantic forest fragment at a considerable distance from the forest edge (370 m). Aedes aegypti occurrence was not influenced by type of land use or land cover.

Resumo Aedes aegypti tem como habitat preferencial áreas densamente povoadas, mas que tem se mostrado capaz de explorar ambientes menos antropizados. O objetivo desse trabalho foi investigar a abundância de mosquitos em áreas florestadas e avaliar a relação dos diferentes tipos de uso e cobertura do solo, em três escalas de paisagem (buffer de 100m, 500m e 1000m). Os mosquitos foram coletados entre outubro de 2012 a março de 2013 utilizando armadilhas de oviposição. Foram coletados 4,179 culicídeos, de pelo menos 10 espécies, destas, Aedes albopictus e Limatus durhami foram eudominantes, representando 90% do total de indivíduos coletados. As espécies de culicídeos respondem de maneira diversa aos tipos de uso e cobertura do solo, indicando que as afinidades mais evidentes se mantém nas três escalas avaliadas. A abundância relativa de Ae. albopictus se mostrou relacionada às áreas mais urbanizadas, enquanto a de Li. durhami, Haemagogus leucocelaenus e Toxorhynchites sp., à presença da mata nativa. Aedes aegypti esteve presente em cinco das oito áreas estudadas, incluindo um fragmento de Mata Atlântica a uma distância considerável da borda (370m). A ocorrência de Aedes aegypti nas áreas analisadas não demonstrou ser influenciada pelo tipo de uso e cobertura do solo.

Mosquito species occurrence in association with landscape composition in green urban areas.

Aedes aegypti prefers densely populated habitats, but has been shown to explore less anthropogenic environments. We investigated composition of the abundance of mosquitoes in forested areas and assessed relationships between species occurrences and different types of land use and land cover at three spatial scales (100m, 500m and 1000m). Mosquitoes were collected from October 2012 to March 2013 using oviposition traps. We collected 4,179 mosquitoes in total including at least 10 species. Aedes albopictus and Limatus durhami were eudominant species, representing 90% of all collected individuals. We found intraspecific differences in response to land use and land cover, and species response patterns were similar at all spatial scales. Ae. albopictus relative abundance was associated with urbanized areas, while Li. durhami, Haemagogus leucocelaenus and Toxorhynchites sp., abundances were associated with native forest. Aedes aegypti were found in five of the eight areas studied, including in an Atlantic forest fragment at a considerable distance from the forest edge (370 m). Aedes aegypti occurrence was not influenced by type of land use or land cover.

Mosquito species occurrence in association with landscape composition in green urban areas

Abstract Aedes aegypti prefers densely populated habitats, but has been shown to explore less anthropogenic environments. We investigated composition of the abundance of mosquitoes in forested areas and assessed relationships between species occurrences and different types of land use and land cover at three spatial scales (100m, 500m and 1000m). Mosquitoes were collected from October 2012 to March 2013 using oviposition traps. We collected 4,179 mosquitoes in total including at least 10 species. Aedes albopictus and Limatus durhami were eudominant species, representing 90% of all collected individuals. We found intraspecific differences in response to land use and land cover, and species response patterns were similar at all spatial scales. Ae. albopictus relative abundance was associated with urbanized areas, while Li. durhami, Haemagogus leucocelaenus and Toxorhynchites sp., abundances were associated with native forest. Aedes aegypti were found in five of the eight areas studied, including in an Atlantic forest fragment at a considerable distance from the forest edge (370 m). Aedes aegypti occurrence was not influenced by type of land use or land cover.

Resumo Aedes aegypti tem como habitat preferencial áreas densamente povoadas, mas que tem se mostrado capaz de explorar ambientes menos antropizados. O objetivo desse trabalho foi investigar a abundância de mosquitos em áreas florestadas e avaliar a relação dos diferentes tipos de uso e cobertura do solo, em três escalas de paisagem (buffer de 100m, 500m e 1000m). Os mosquitos foram coletados entre outubro de 2012 a março de 2013 utilizando armadilhas de oviposição. Foram coletados 4,179 culicídeos, de pelo menos 10 espécies, destas, Aedes albopictus e Limatus durhami foram eudominantes, representando 90% do total de indivíduos coletados. As espécies de culicídeos respondem de maneira diversa aos tipos de uso e cobertura do solo, indicando que as afinidades mais evidentes se mantém nas três escalas avaliadas. A abundância relativa de Ae. albopictus se mostrou relacionada às áreas mais urbanizadas, enquanto a de Li. durhami, Haemagogus leucocelaenus e Toxorhynchites sp., à presença da mata nativa. Aedes aegypti esteve presente em cinco das oito áreas estudadas, incluindo um fragmento de Mata Atlântica a uma distância considerável da borda (370m). A ocorrência de Aedes aegypti nas áreas analisadas não demonstrou ser influenciada pelo tipo de uso e cobertura do solo.

CBCT-based volume of simulated root resorption - influence of FOV and voxel size.

AIM: To examine the influence of the field of view (FOV) and voxel size on the measurement of the volume of simulated internal root resorption (IRR) lesions through cone-beam computed tomography (CBCT). METHODOLOGY: Eleven single-rooted teeth with IRR simulated by acid demineralization were studied. CBCT images were acquired using large FOV (voxel sizes of 0.200, 0.250 and 0.300 mm) and limited FOV (voxel sizes of 0.076, 0.100 and 0.200 mm). The IRR volumes were calculated using the Dolphin(®) software. Volumetric measurements were validated using IRR silicone putty casts. The analysis of variance (anova) for randomized block design complemented with the Tukey's test was employed. RESULTS: IRR volumes obtained using voxel sizes of 0.200 and 0.250 mm were similar (P > 0.05). However, both these values were significantly different from that obtained using the 0.300-mm voxel (P < 0.05). There was no significant difference between IRR volumes measured through voxel sizes of 0.076 and 0.100 mm (P > 0.05), but both differed significantly from that obtained through the 0.200-mm voxel (P < 0.05). There was no significant difference between the volumetric measurements of the 0.200-mm voxel images of the restricted and large FOV protocols. The mean volumes of the silicone casts were smaller than those calculated using a 0.200-mm voxel, but were similar to those obtained using voxel sizes of 0.076 and 0.300 mm. CONCLUSIONS: Despite the FOV protocol, voxel size can influence measurement of simulated IRR volumes. The importance of standardization of CBCT image acquisition protocols is emphasized, especially during follow-up of an IRR lesion, to prevent misinterpretation of its extent, which can create a bias in clinical decisions.

CBCT for the assessment of second mesiobuccal (MB2) canals in maxillary molar teeth: effect of voxel size and presence of root filling.

AIM: To compare detection of the second mesiobuccal (MB2) canal in maxillary molar teeth using cone-beam computed tomography (CBCT) with different voxel sizes against conventional radiographic examination when the MB1 was unprepared, prepared and filled. METHODOLOGY: Radiographic examination and 0.2-, 0.25- and 0.3-mm CBCT (n = 89) were performed in 3 stages: S1, no first mesiobuccal (MB1) canal preparation or filling; S2, after MB1 preparation and filling; and S3, after MB1 root canal filling removal and canal repreparation. Images were analysed using the i-Cat software. After RE and CBCT acquisition in S3, all the samples were clarified to directly visualize the presence of the MB2 canal. All images were analysed by a blinded, previously calibrated examiner. Accuracy, specificity and sensitivity were compared using analysis of variance (P < 0.05 level of significance). RESULTS: MB2 root canals were detected in 67% of the samples. Overall, radiographic examination was associated with lower mean accuracy values for detecting MB2 than CBCT regardless of the MB1 condition. The MB1 root canal condition did not influence MB2 detection in 0.2-mm voxel images. The presence of root fillings in the MB1 canals reduced the detection of MB2 canals, especially in the 0.3- and 0.25-mm voxel-size images (P < 0.05). CONCLUSION: CBCT was associated with higher mean values of specificity and sensibility than radiographic examination for the detection of MB2 canals. When endodontic retreatment is necessary removal of the root filling prior to the CBCT examination eliminates artefacts, thereby permitting the use of the 0.3-mm voxel protocol that has good diagnostic performance and lower radiation dose.

ZnO:Al thin films deposited by RF-magnetron sputtering with tunable and uniform properties.

Nanostructured, high quality and large area Al-doped ZnO (ZnO:Al) thin films were obtained by radiofrequency (RF) magnetron sputtering. The sample rotation during deposition has resulted in excellent spatial distribution of thickness and electro-optical properties compared to that obtained under static conditions. ZnO:Al thin films are employed in a large number of devices, including thin film solar cells, where the uniformity of the properties is a key factor for a possible up-scaling of the research results to industrially relevant substrate sizes. A chemical post etching treatment was employed achieving tunable surface nanotextures to generate light scattering at the desired wavelength for improved cell efficiency. Since the film resistivity is only slightly increased by the etching, this post-deposition step allows separating the optimization of electro-optical properties from light scattering behavior. The thin films were characterized by FE-SEM, XRD, UV-VIS spectroscopy, four probe and van der Paw techniques.

Different clinical outcomes following root fractures of adjacent incisors: a case report.

AIM: To report different patterns of root fracture healing in adjacent maxillary central incisors with distinct post-treatment outcomes. SUMMARY: To describe the case of a 12-year-old girl who presented with an avulsed coronal fragment of tooth 11 and root fractures in the middle thirds of teeth 11 and 21. Four months after initial treatment, she was referred for specialized endodontic care. Tooth 11 presented no clinical or radiographic signs of pulp breakdown. However a sinus tract was found related to the middle root third of tooth 21, indicating pulp necrosis in the coronal fragment. The coronal fragment was root filled and periapical surgery was performed to remove the apical fragment. Twelve months after the clinical procedures and 16 months after trauma, hard tissue healing was evident in tooth 11 region. Bone healing was also satisfactory in the periapical region of tooth 21. *Even adjacent teeth may display different reaction patterns after trauma. *The prognosis of root fractures is variable and different clinical approach may be required to preserve teeth with fractured roots.