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1.
J Med Internet Res ; 24(8): e27333, 2022 08 22.
Article in English | MEDLINE | ID: mdl-35994324

ABSTRACT

BACKGROUND: Clinical practice guidelines recommend antiplatelet and statin therapies as well as blood pressure control and tobacco cessation for secondary prevention in patients with established atherosclerotic cardiovascular diseases (ASCVDs). However, these strategies for risk modification are underused, especially in rural communities. Moreover, resources to support the delivery of preventive care to rural patients are fewer than those for their urban counterparts. Transformative interventions for the delivery of tailored preventive cardiovascular care to rural patients are needed. OBJECTIVE: A multidisciplinary team developed a rural-specific, team-based model of care intervention assisted by clinical decision support (CDS) technology using participatory design in a sociotechnical conceptual framework. The model of care intervention included redesigned workflows and a novel CDS technology for the coordination and delivery of guideline recommendations by primary care teams in a rural clinic. METHODS: The design of the model of care intervention comprised 3 phases: problem identification, experimentation, and testing. Input from team members (n=35) required 150 hours, including observations of clinical encounters, provider workshops, and interviews with patients and health care professionals. The intervention was prototyped, iteratively refined, and tested with user feedback. In a 3-month pilot trial, 369 patients with ASCVDs were randomized into the control or intervention arm. RESULTS: New workflows and a novel CDS tool were created to identify patients with ASCVDs who had gaps in preventive care and assign the right care team member for delivery of tailored recommendations. During the pilot, the intervention prototype was iteratively refined and tested. The pilot demonstrated feasibility for successful implementation of the sociotechnical intervention as the proportion of patients who had encounters with advanced practice providers (nurse practitioners and physician assistants), pharmacists, or tobacco cessation coaches for the delivery of guideline recommendations in the intervention arm was greater than that in the control arm. CONCLUSIONS: Participatory design and a sociotechnical conceptual framework enabled the development of a rural-specific, team-based model of care intervention assisted by CDS technology for the transformation of preventive health care delivery for ASCVDs.


Subject(s)
Decision Support Systems, Clinical , Rural Population , Ambulatory Care Facilities , Blood Pressure , Humans , Preventive Health Services
2.
Cell Metab ; 23(6): 1207-1215, 2016 Jun 14.
Article in English | MEDLINE | ID: mdl-27304512

ABSTRACT

Growth and differentiation factor 11 (GDF11) is a transforming growth factor ß superfamily member with a controversial role in aging processes. We have developed a highly specific LC-MS/MS assay to quantify GDF11, resolved from its homolog, myostatin (MSTN), based on unique amino acid sequence features. Here, we demonstrate that MSTN, but not GDF11, declines in healthy men throughout aging. Neither GDF11 nor MSTN levels differ as a function of age in healthy women. In an independent cohort of older adults with severe aortic stenosis, we show that individuals with higher GDF11 were more likely to be frail and have diabetes or prior cardiac conditions. Following valve replacement surgery, higher GDF11 at surgical baseline was associated with rehospitalization and multiple adverse events. Cumulatively, our results show that GDF11 levels do not decline throughout aging but are associated with comorbidity, frailty, and greater operative risk in older adults with cardiovascular disease.


Subject(s)
Aging/metabolism , Bone Morphogenetic Proteins/metabolism , Cardiovascular Diseases/metabolism , Growth Differentiation Factors/metabolism , Myostatin/metabolism , Adult , Aged , Aged, 80 and over , Amino Acid Sequence , Biomarkers/blood , Bone Morphogenetic Proteins/blood , Bone Morphogenetic Proteins/chemistry , Cardiovascular Diseases/blood , Cardiovascular Diseases/mortality , Chromatography, Liquid , Demography , Female , Growth Differentiation Factors/blood , Growth Differentiation Factors/chemistry , Humans , Male , Middle Aged , Myostatin/blood , Myostatin/chemistry , Risk Factors , Tandem Mass Spectrometry , Young Adult
3.
PLoS One ; 10(6): e0130582, 2015.
Article in English | MEDLINE | ID: mdl-26075618

ABSTRACT

Computational design has been used with mixed success for the design of protein surfaces, with directed evolution heretofore providing better practical solutions than explicit design. Directed evolution, however, requires a tractable high-throughput screen because the random nature of mutation does not enrich for desired traits. Here we demonstrate the successful design of the ß-sheet surface of a red fluorescent protein (RFP), enabling control over its oligomerization. To isolate the problem of surface design, we created a hybrid RFP from DsRed and mCherry with a stabilized protein core that allows for monomerization without loss of fluorescence. We designed an explicit library for which 93 of 96 (97%) of the protein variants are soluble, stably fluorescent, and monomeric. RFPs are heavily used in biology, but are natively tetrameric, and creating RFP monomers has proven extremely difficult. We show that surface design and core engineering are separate problems in RFP development and that the next generation of RFP markers will depend on improved methods for core design.


Subject(s)
Fluorescent Dyes/chemistry , Luminescent Proteins/genetics , Protein Engineering/methods , Computational Biology , Fluorescence , Fluorescent Dyes/chemical synthesis , Gene Library , Luminescent Proteins/chemistry , Plasmids/genetics , Protein Conformation , Protein Multimerization/genetics , Protein Multimerization/physiology , Red Fluorescent Protein
4.
PLoS One ; 7(12): e52463, 2012.
Article in English | MEDLINE | ID: mdl-23285050

ABSTRACT

Red fluorescent proteins (RFPs) derived from organisms in the class Anthozoa have found widespread application as imaging tools in biological research. For most imaging experiments, RFPs that mature quickly to the red chromophore and produce little or no green chromophore are most useful. In this study, we used rational design to convert a yellow fluorescent mPlum mutant to a red-emitting RFP without reverting any of the mutations causing the maturation deficiency and without altering the red chromophore's covalent structure. We also created an optimized mPlum mutant (mPlum-E16P) that matures almost exclusively to the red chromophore. Analysis of the structure/function relationships in these proteins revealed two structural characteristics that are important for efficient red chromophore maturation in DsRed-derived RFPs. The first is the presence of a lysine residue at position 70 that is able to interact directly with the chromophore. The second is an absence of non-bonding interactions limiting the conformational flexibility at the peptide backbone that is oxidized during red chromophore formation. Satisfying or improving these structural features in other maturation-deficient RFPs may result in RFPs with faster and more complete maturation to the red chromophore.


Subject(s)
Luminescent Proteins/metabolism , Protein Engineering , Absorption , Crystallography, X-Ray , Kinetics , Luminescent Proteins/chemistry , Models, Molecular , Mutant Proteins/metabolism , Mutation , Spectrometry, Fluorescence , Static Electricity , Red Fluorescent Protein
5.
Proc Natl Acad Sci U S A ; 107(47): 20257-62, 2010 Nov 23.
Article in English | MEDLINE | ID: mdl-21059931

ABSTRACT

The longer emission wavelengths of red fluorescent proteins (RFPs) make them attractive for whole-animal imaging because cells are more transparent to red light. Although several useful RFPs have been developed using directed evolution, the quest for further red-shifted and improved RFPs continues. Herein, we report a structure-based rational design approach to red-shift the fluorescence emission of RFPs. We applied a combined computational and experimental approach that uses computational protein design as an in silico prescreen to generate focused combinatorial libraries of mCherry mutants. The computational procedure helped us identify residues that could fulfill interactions hypothesized to cause red-shifts without destabilizing the protein fold. These interactions include stabilization of the excited state through H-bonding to the acylimine oxygen atom, destabilization of the ground state by hydrophobic packing around the charged phenolate, and stabilization of the excited state by a π-stacking interaction. Our methodology allowed us to identify three mCherry mutants (mRojoA, mRojoB, and mRouge) that display emission wavelengths > 630 nm, representing red-shifts of 20-26 nm. Moreover, our approach required the experimental screening of a total of ∼5,000 clones, a number several orders of magnitude smaller than those previously used to achieve comparable red-shifts. Additionally, crystal structures of mRojoA and mRouge allowed us to verify fulfillment of the interactions hypothesized to cause red-shifts, supporting their contribution to the observed red-shifts.


Subject(s)
Computational Biology/methods , Fluorescence , Luminescent Proteins/biosynthesis , Protein Conformation , Protein Engineering/methods , Crystallography , Escherichia coli , Gene Library , Hydrogen Bonding , Luminescent Proteins/genetics , Mass Spectrometry , Molecular Structure , Mutagenesis , Mutation/genetics , Oxygen/metabolism , Spectrophotometry, Atomic , Red Fluorescent Protein
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