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1.
Nat Plants ; 9(4): 535-543, 2023 04.
Article in English | MEDLINE | ID: mdl-36914897

ABSTRACT

DELLA proteins are land-plant specific transcriptional regulators that transduce environmental information to multiple processes throughout a plant's life1-3. The molecular basis for this critical function in angiosperms has been linked to the regulation of DELLA stability by gibberellins and to the capacity of DELLA proteins to interact with hundreds of transcription factors4,5. Although bryophyte orthologues can partially fulfil functions attributed to angiosperm DELLA6,7, it is not clear whether the capacity to establish interaction networks is an ancestral property of DELLA proteins or is associated with their role in gibberellin signalling8-10. Here we show that representative DELLAs from the main plant lineages display a conserved ability to interact with multiple transcription factors. We propose that promiscuity was encoded in the ancestral DELLA protein, and that this property has been largely maintained, whereas the lineage-dependent diversification of DELLA-dependent functions mostly reflects the functional evolution of their interacting partners.


Subject(s)
Arabidopsis Proteins , Arabidopsis Proteins/metabolism , Gene Regulatory Networks , Gibberellins/metabolism , Plants/genetics , Transcription Factors/genetics , Transcription Factors/metabolism , Gene Expression Regulation, Plant , Plant Growth Regulators/metabolism
2.
New Phytol ; 238(2): 654-672, 2023 04.
Article in English | MEDLINE | ID: mdl-36683399

ABSTRACT

Proteins of the DELLA family integrate environmental signals to regulate growth and development throughout the plant kingdom. Plants expressing non-degradable DELLA proteins underpinned the development of high-yielding 'Green Revolution' dwarf crop varieties in the 1960s. In vascular plants, DELLAs are regulated by gibberellins, diterpenoid plant hormones. How DELLA protein function has changed during land plant evolution is not fully understood. We have examined the function and interactions of DELLA proteins in the moss Physcomitrium (Physcomitrella) patens, in the sister group of vascular plants (Bryophytes). PpDELLAs do not undergo the same regulation as flowering plant DELLAs. PpDELLAs are not degraded by diterpenes, do not interact with GID1 gibberellin receptor proteins and do not participate in responses to abiotic stress. PpDELLAs do share a function with vascular plant DELLAs during reproductive development. PpDELLAs also regulate spore germination. PpDELLAs interact with moss-specific photoreceptors although a function for PpDELLAs in light responses was not detected. PpDELLAs likely act as 'hubs' for transcriptional regulation similarly to their homologues across the plant kingdom. Taken together, these data demonstrate that PpDELLA proteins share some biological functions with DELLAs in flowering plants, but other DELLA functions and regulation evolved independently in both plant lineages.


Subject(s)
Arabidopsis Proteins , Bryopsida , Spores , Tracheophyta , Diterpenes , Germination , Gene Expression Regulation, Plant , Plant Growth Regulators , Arabidopsis Proteins/metabolism , Spores/metabolism , Tracheophyta/metabolism , Bryopsida/metabolism , Plants/metabolism , Gibberellins/metabolism , Gibberellins/pharmacology
3.
Semin Cell Dev Biol ; 109: 46-54, 2021 01.
Article in English | MEDLINE | ID: mdl-32414681

ABSTRACT

Gibberellins modulate multiple aspects of plant behavior. The molecular mechanism by which these hormones are perceived and how this information is translated into transcriptional changes has been elucidated in vascular plants: gibberellins are perceived by the nuclear receptor GID1, which then interacts with the DELLA nuclear proteins and promote their degradation, resulting in the modification of the activity of transcription factors with which DELLAs interact physically. However, several important questions are still pending: how does a single molecule perform such a vast array of functions along plant development? What property do gibberellins add to plant behavior? A closer look at gibberellin action from an evolutionary perspective can help answer these questions. DELLA proteins are conserved in all land plants, and predate the emergence of a full gibberellin metabolic pathway and the GID1 receptor in the ancestor of vascular plants. The origin of gibberellin signaling is linked to the exaptation by GID1 of the N-terminal domain in DELLA, which already acted as a transcriptional coactivator domain in the ancestral DELLA proteins. At least the ability to control plant growth seems to be encoded already in the ancestral DELLA protein too, suggesting that gibberellins' functional diversity is the direct consequence of DELLA protein activity. Finally, comparative network analysis suggests that gibberellin signaling increases the coordination of transcriptional responses, providing a theoretical framework for the role of gibberellins in plant adaptation at the evolutionary scale, which further needs experimental testing.


Subject(s)
Gibberellins/metabolism , Plant Development/physiology , Plant Growth Regulators/physiology
4.
Mol Biol Evol ; 36(5): 908-918, 2019 05 01.
Article in English | MEDLINE | ID: mdl-30668817

ABSTRACT

DELLA proteins are plant-specific transcriptional regulators known to interact through their C-terminal GRAS domain with over 150 transcription factors in Arabidopsis thaliana. Besides, DELLAs from vascular plants can interact through the N-terminal domain with the gibberellin receptor encoded by GID1, through which gibberellins promote DELLA degradation. However, this regulation is absent in nonvascular land plants, which lack active gibberellins or a proper GID1 receptor. Current knowledge indicates that DELLAs are important pieces of the signaling machinery of vascular plants, especially angiosperms, but nothing is known about DELLA function during early land plant evolution or if they exist at all in charophytan algae. We have now elucidated the evolutionary origin of DELLA proteins, showing that algal GRAS proteins are monophyletic and evolved independently from those of land plants, which explains why there are no DELLAs outside land plants. DELLA genes have been maintained throughout land plant evolution with only two major duplication events kept among plants. Furthermore, we show that the features needed for DELLA interaction with the receptor were already present in the ancestor of all land plants and propose that these DELLA N-terminal motifs have been tightly conserved in nonvascular land plants for their function in transcriptional coactivation, which allowed subsequent exaptation for the interaction with the GID1 receptor when vascular plants developed gibberellin synthesis and the corresponding perception module.


Subject(s)
Algal Proteins/genetics , Arabidopsis Proteins/genetics , Evolution, Molecular , Gene Expression Regulation, Plant , Plants/genetics , Amino Acid Sequence , Arabidopsis Proteins/metabolism , Gibberellins/metabolism , Plants/metabolism , Protein Domains , Receptors, Cell Surface/metabolism , Transcriptional Activation
5.
Development ; 145(13)2018 07 09.
Article in English | MEDLINE | ID: mdl-29914969

ABSTRACT

Ovule formation is a complex developmental process in plants, with a strong impact on the production of seeds. Ovule primordia initiation is controlled by a gene network, including components of the signaling pathways of auxin, brassinosteroids and cytokinins. By contrast, gibberellins (GAs) and DELLA proteins, the negative regulators of GA signaling, have never been shown to be involved in ovule initiation. Here, we provide molecular and genetic evidence that points to DELLA proteins as novel players in the determination of ovule number in Arabidopsis and in species of agronomic interest, such as tomato and rapeseed, adding a new layer of complexity to this important developmental process. DELLA activity correlates positively with ovule number, acting as a positive factor for ovule initiation. In addition, ectopic expression of a dominant DELLA in the placenta is sufficient to increase ovule number. The role of DELLA proteins in ovule number does not appear to be related to auxin transport or signaling in the ovule primordia. Possible crosstalk between DELLA proteins and the molecular and hormonal network controlling ovule initiation is also discussed.


Subject(s)
Arabidopsis Proteins/metabolism , Arabidopsis/embryology , Gibberellins/metabolism , Ovule/embryology , Arabidopsis/cytology , Ovule/cytology
7.
Front Plant Sci ; 8: 626, 2017.
Article in English | MEDLINE | ID: mdl-28487716

ABSTRACT

DELLA proteins are transcriptional regulators present in all land plants which have been shown to modulate the activity of over 100 transcription factors in Arabidopsis, involved in multiple physiological and developmental processes. It has been proposed that DELLAs transduce environmental information to pre-wired transcriptional circuits because their stability is regulated by gibberellins (GAs), whose homeostasis largely depends on environmental signals. The ability of GAs to promote DELLA degradation coincides with the origin of vascular plants, but the presence of DELLAs in other land plants poses at least two questions: what regulatory properties have DELLAs provided to the behavior of transcriptional networks in land plants, and how has the recruitment of DELLAs by GA signaling affected this regulation. To address these issues, we have constructed gene co-expression networks of four different organisms within the green lineage with different properties regarding DELLAs: Arabidopsis thaliana and Solanum lycopersicum (both with GA-regulated DELLA proteins), Physcomitrella patens (with GA-independent DELLA proteins) and Chlamydomonas reinhardtii (a green alga without DELLA), and we have examined the relative evolution of the subnetworks containing the potential DELLA-dependent transcriptomes. Network analysis indicates a relative increase in parameters associated with the degree of interconnectivity in the DELLA-associated subnetworks of land plants, with a stronger effect in species with GA-regulated DELLA proteins. These results suggest that DELLAs may have played a role in the coordination of multiple transcriptional programs along evolution, and the function of DELLAs as regulatory 'hubs' became further consolidated after their recruitment by GA signaling in higher plants.

8.
Sensors (Basel) ; 16(7)2016 Jul 22.
Article in English | MEDLINE | ID: mdl-27455277

ABSTRACT

This paper describes a new cooperative Intelligent Transportation System architecture that aims to enable collaborative sensing services. The main goal of this architecture is to improve transportation efficiency and performance. The system, which has been proven within the participation in the ICSI (Intelligent Cooperative Sensing for Improved traffic efficiency) European project, encompasses the entire process of capture and management of available road data. For this purpose, it applies a combination of cooperative services and methods for data sensing, acquisition, processing and communication amongst road users, vehicles, infrastructures and related stakeholders. Additionally, the advantages of using the proposed system are exposed. The most important of these advantages is the use of a distributed architecture, moving the system intelligence from the control centre to the peripheral devices. The global architecture of the system is presented, as well as the software design and the interaction between its main components. Finally, functional and operational results observed through the experimentation are described. This experimentation has been carried out in two real scenarios, in Lisbon (Portugal) and Pisa (Italy).

9.
Sensors (Basel) ; 15(6): 12299-322, 2015 May 26.
Article in English | MEDLINE | ID: mdl-26016915

ABSTRACT

The effectiveness of Intelligent Transportation Systems depends largely on the ability to integrate information from diverse sources and the suitability of this information for the specific user. This paper describes a new approach for the management and exchange of this information, related to multimodal transportation. A novel software architecture is presented, with particular emphasis on the design of the data model and the enablement of services for information retrieval, thereby obtaining a semantic model for the representation of transport information. The publication of transport data as semantic information is established through the development of a Multimodal Transport Ontology (MTO) and the design of a distributed architecture allowing dynamic integration of transport data. The advantages afforded by the proposed system due to the use of Linked Open Data and a distributed architecture are stated, comparing it with other existing solutions. The adequacy of the information generated in regard to the specific user's context is also addressed. Finally, a working solution of a semantic trip planner using actual transport data and running on the proposed architecture is presented, as a demonstration and validation of the system.

10.
Sensors (Basel) ; 13(5): 6492-523, 2013 May 16.
Article in English | MEDLINE | ID: mdl-23681092

ABSTRACT

This paper presents an intelligent streetlight management system based on LED lamps, designed to facilitate its deployment in existing facilities. The proposed approach, which is based on wireless communication technologies, will minimize the cost of investment of traditional wired systems, which always need civil engineering for burying of cable underground and consequently are more expensive than if the connection of the different nodes is made over the air. The deployed solution will be aware of their surrounding's environmental conditions, a fact that will be approached for the system intelligence in order to learn, and later, apply dynamic rules. The knowledge of real time illumination needs, in terms of instant use of the street in which it is installed, will also feed our system, with the objective of providing tangible solutions to reduce energy consumption according to the contextual needs, an exact calculation of energy consumption and reliable mechanisms for preventive maintenance of facilities.

11.
Sensors (Basel) ; 12(5): 6587-609, 2012.
Article in English | MEDLINE | ID: mdl-22778659

ABSTRACT

This paper describes a telematic system based on an intelligent van which is capable of tracing pharmaceutical drugs over delivery routes from a warehouse to pharmacies, without altering carriers' daily conventional tasks. The intelligent van understands its environment, taking into account its location, the assets and the predefined delivery route; with the capability of reporting incidences to carriers in case of failure according to the established distribution plan. It is a non-intrusive solution which represents a successful experience of using smart environments and an optimized Radio Frequency Identification (RFID) embedded system in a viable way to resolve a real industrial need in the pharmaceutical industry. The combination of deterministic modeling of the indoor vehicle, the implementation of an ad-hoc radiating element and an agile software platform within an overall system architecture leads to a competitive, flexible and scalable solution.


Subject(s)
Motor Vehicles , Pharmaceutical Preparations , Radio Waves
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