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1.
Mol Ecol ; 24(16): 4205-21, 2015 Aug.
Article in English | MEDLINE | ID: mdl-26147456

ABSTRACT

The giant edible Placostylus snails of New Caledonia occur across a wide range of environmental conditions, from the dry southwest to the wetter central and northeastern regions. In large, slow-moving animals such as Placostylus, speciation could be assumed to be largely driven by allopatry and genetic drift as opposed to natural selection. We examined variation in shell morphology using geometric morphometrics and genetic structure within two species of Placostylus (P. fibratus, P. porphyrostomus), to determine the drivers of diversity in this group. Despite the current patchy distribution of snails on New Caledonia, both mtDNA and nuclear SNP data sets (>3000 loci) showed weak admixing between populations and species. Shell morphology was concordant with the genetic clusters we identified and had a strong relationship with local environment. The genetic data, in contrast to the morphological data, did not show concordance with climatic conditions, suggesting the snails are not limited in their ability to adapt to different environments. In sympatry, P. fibratus and P. porphyrostomus maintained genetic and morphological differences, suggesting a genetic basis of phenotypic variation. Convergence of shell shape was observed in two adjacent populations that are genetically isolated but experience similar habitat and climatic conditions. Conversely, some populations in contrasting environments were morphologically distinct although genetically indistinguishable. We infer that morphological divergence in the Placostylus snails of New Caledonia is mediated by adaptation to the local environment.


Subject(s)
Animal Shells/anatomy & histology , Biological Evolution , Climate , Selection, Genetic , Snails/genetics , Adaptation, Biological/genetics , Animals , DNA, Mitochondrial/genetics , Gene Flow , Genetic Drift , Genetics, Population , Linear Models , Models, Genetic , New Caledonia , Phenotype , Polymorphism, Single Nucleotide , Sequence Analysis, DNA , Snails/anatomy & histology
2.
Heredity (Edinb) ; 110(6): 501-10, 2013 Jun.
Article in English | MEDLINE | ID: mdl-23486082

ABSTRACT

Species density is higher in the tropics (low latitude) than in temperate regions (high latitude) resulting in a latitudinal biodiversity gradient (LBG). The LBG must be generated by differential rates of speciation and/or extinction and/or immigration among regions, but the role of each of these processes is still unclear. Recent studies examining differences in rates of molecular evolution have inferred a direct link between rate of molecular evolution and rate of speciation, and postulated these as important drivers of the LBG. Here we review the molecular genetic evidence and examine the factors that might be responsible for differences in rates of molecular evolution. Critical to this is the directionality of the relationship between speciation rates and rates of molecular evolution.


Subject(s)
Biodiversity , Evolution, Molecular , Genetic Speciation , Climate , Extinction, Biological , Mutation Rate , Phylogeny , Population Density
3.
J Evol Biol ; 24(11): 2321-8, 2011 Nov.
Article in English | MEDLINE | ID: mdl-21848984

ABSTRACT

Theory proposes that sexually dimorphic, polygynous species are at particularly high risk of sex-biased predation, because conspicuous males are more often preyed upon compared to females. We tested the effects of predation on population sex ratio in a highly sexually dimorphic insect genus (Hemideina). In addition, introduction of a suite of novel mammalian predators to New Zealand during the last 800 years is likely to have modified selection pressures on native tree weta. We predicted that the balance between natural and sexual selection would be disrupted by the new predator species. We expected to see a sex ratio skew resulting from higher mortality in males with expensive secondary sexual weaponry; combat occurs outside refuge cavities between male tree weta. We took a meta-analytic approach using generalized linear mixed models to compare sex ratio variation in 58 populations for six of the seven species in Hemideina. We investigated adult sex ratio across these populations to determine how much variation in sex ratio can be attributed to sex-biased predation in populations with either low or high number of invasive mammalian predators. Surprisingly, we did not detect any significant deviation from 1 : 1 parity for adult sex ratio and found little difference between populations or species. We conclude that there is little evidence of sex-biased predation by either native or mammalian predators and observed sex ratio skew in individual populations of tree weta is probably an artefact of sampling error. We argue that sex-biased predation may be less prevalent in sexually dimorphic species than previously suspected and emphasize the usefulness of a meta-analytic approach to robustly analyse disparate and heterogeneous data.


Subject(s)
Mating Preference, Animal , Orthoptera/physiology , Selection, Genetic , Sex Characteristics , Sex Ratio , Animals , Female , Food Chain , Linear Models , Male , New Zealand , Species Specificity
4.
Heredity (Edinb) ; 93(1): 34-42, 2004 Jul.
Article in English | MEDLINE | ID: mdl-15138450

ABSTRACT

Hieracium pilosella: (Asteraceae) was accidentally introduced to New Zealand about 100 years ago. Since then it has become an aggressive weed, and an unexpected degree of genetic and genome size variation has been detected; features that might result from interspecies hybridization. We investigated the possibility that H. pilosella has hybridized with related taxa. Of the four other subgenus Pilosella species introduced to New Zealand, H. praealtum is the most abundant and, on morphological and distributional evidence, most likely to be the other parent. Flow cytometry was used to estimate relative genome size for 156 Hieracium plants collected from the wild. Plants assigned to either parental or hybrid morphotypes were found to comprise tetraploid and pentaploid individuals using genome size measurements, and this was confirmed with direct mitotic chromosome counts for a subset of plants. The haploid DNA content of H. praealtum was approximately 22% larger than that of H. pilosella. Putative hybrids that were tetraploid had mean genome sizes equivalent to two H. pilosella and two H. praealtum haploid chromosome sets, implying they were hybrids arising from the fertilization of two reduced gametes. Similar results were obtained from tetraploid hybrids produced by controlled pollination. However, the majority of field hybrids were pentaploid with a genome size equivalent to four H. pilosella and one H. praealtum haploid chromosome sets. We infer that these are not first-generation hybrids but represent successful backcrossing with H. pilosella and/or hybrid-hybrid crossing, and that sexual tetraploid hybrids have been the parents. We note that populations putatively of H. pilosella often comprise apomictic pentaploid hybrids. Significantly, our data indicate the emergence of sexual hybrids that provide further opportunity for gene flow among taxa in this complex.


Subject(s)
Asteraceae/genetics , Flow Cytometry , Genome, Plant , Hybridization, Genetic , Chimera , Chromosomes, Plant , DNA, Plant/genetics , Geography , New Zealand , Polyploidy , Species Specificity
5.
Cytogenet Genome Res ; 96(1-4): 217-22, 2002.
Article in English | MEDLINE | ID: mdl-12438802

ABSTRACT

The weta Hemideina crassidens has two chromosomal races that differ by two centric fusions or fissions. The mitochondrial DNA of weta from both chromosomal races and a sister species were sequenced for a 750-bp region of the gene coding for cytochrome oxidase I. The average pairwise genetic distance among the 15 (XO)-chromosome race weta was almost four times greater than the average distance among the 19 (XO)-chromosome race weta. The weta from the 19-chromosome race formed a well-supported monophyletic clade in all shortest maximum parsimony trees. Maximum likelihood and neighbor-joining trees suggested that the 15-chromosome karyotype was paraphyletic with respect to the 19-chromosome karyotype, but this was not supported by maximum parsimony analyses. Although phylogenetic analysis could not exclude chromosome fusion as the rearrangement responsible for the karyotype differentiation, the level of sequence variation and pattern of distribution appear to implicate fission as the more likely event.


Subject(s)
Chromosome Mapping , DNA, Mitochondrial/genetics , Orthoptera/classification , Orthoptera/genetics , Animals , Base Pairing , Genetic Markers , Geography , Haplotypes , New Zealand , Phylogeny
6.
Mol Ecol ; 11(10): 2003-12, 2002 Oct.
Article in English | MEDLINE | ID: mdl-12296944

ABSTRACT

Chloroplast DNA sequences were obtained from 331 Asplenium ceterach plants representing 143 populations from throughout the range of the complex in Europe, plus outlying sites in North Africa and the near East. We identified nine distinct haplotypes from a 900 bp fragment of trnL-trnF gene. Tetraploid populations were encountered throughout Europe and further afield, whereas diploid populations were scarcer and predominated in the Pannonian-Balkan region. Hexaploids were encountered only in southern Mediterranean populations. Four haplotypes were found among diploid populations of the Pannonian-Balkans indicating that this region formed a northern Pleistocene refugium. A separate polyploid complex centred on Greece, comprises diploid, tetraploid and hexaploid populations with two endemic haplotypes and suggests long-term persistence of populations in the southern Mediterranean. Three chloroplast DNA (cpDNA) haplotypes were common among tetraploids in Spain and Italy, with diversity reducing northwards suggesting expansion from the south after the Pleistocene. Our cpDNA and ploidy data indicate at least six independent origins of polyploids.


Subject(s)
DNA, Chloroplast/genetics , Evolution, Molecular , Ferns/genetics , Ice , Polyploidy , Base Sequence , Europe , Ferns/classification , Ferns/growth & development , Genetic Variation , Genetics, Population , Haplotypes , Molecular Sequence Data , Phylogeny , Sequence Analysis, DNA
7.
Heredity (Edinb) ; 86(Pt 3): 303-12, 2001 Mar.
Article in English | MEDLINE | ID: mdl-11488967

ABSTRACT

There are eight distinct chromosomal races of the New Zealand weta Hemideina thoracica. We used mtDNA sequence data to test the hypothesis that these races originated on islands during the early Pliocene (7--4 million years ago). Nine major mitochondrial lineages were identified from 65 cytochrome oxidase I sequences. Phylogenetic analysis of these lineages suggests that they arose at approximately the same time. The geographical distribution of some lineages coincides with areas that were islands during the Pliocene. Overall, hierarchical AMOVA analysis shows that chromosomal races and Pliocene islands describe only 28% and 24%, respectively, of the total current mtDNA variation. However, removing one widespread (A) and one putatively introgressed (F) lineage increases these estimates to 65% and 80%, respectively. Intraspecific sequence divergence was very high, reaching a maximum of 9.5% (uncorrected distance) and GC content was high compared to other insect mtDNA sequences. Average corrected distance among mtDNA lineages supports the Pliocene origins of this level of genetic diversity. In the southern part of the species range there is reduced mtDNA variation, probably related to local extinction of H. thoracica populations from recent volcanic activity and subsequent re-colonization from a leading edge. In contrast, in this southern part there are five chromosome races, suggesting that chromosome races here may be younger than those in the north.


Subject(s)
Biological Evolution , Chromosomes/genetics , DNA, Mitochondrial/genetics , Orthoptera/genetics , Animals , Electron Transport Complex IV/genetics , Genes, Insect , Genetic Variation , Haplotypes , Karyotyping , New Zealand , Phylogeny , Polymorphism, Single-Stranded Conformational
8.
Hereditas ; 132(1): 49-54, 2000.
Article in English | MEDLINE | ID: mdl-10857259

ABSTRACT

Two karyotypes within the species Hemideina crassidens are described, 2n = 15 (XO) and 2n = 19 (XO). These two karyotypes have a NF of 28. The 19-karyotype was found exclusively in the southern part of the species range and the 15-karyotype was found in the north. The differences between the two karyotypes are interpreted as arising from two Robertsonian translocations (fission/fusion). Laboratory matings between weta with the two karyotypes produced viable offspring. During meiosis in F1 intraspecific hybrids metacentric and acrocentric autosomes aligned to form two trivalents, confirming homologies predicted by Robertsonian translocations. The subspecies H. c. crassicruris, (confined to Stephens Island) was found to be polymorphic for a metacentric B chromosome. An unusual association of sex and presence of B chromosome was observed in this island population with Bs found only in male weta.


Subject(s)
Chromosomes , Orthoptera/genetics , Translocation, Genetic , Animals , Crosses, Genetic , Evolution, Molecular , Female , Heterozygote , Male
9.
Mol Ecol ; 9(6): 657-66, 2000 Jun.
Article in English | MEDLINE | ID: mdl-10849282

ABSTRACT

Most research on the biological effects of Pleistocene glaciation and refugia has been undertaken in the northern hemisphere and focuses on lowland taxa. Using single-strand conformation polymorphism (SSCP) analysis and sequencing of mitochondrial cytochrome oxidase I, we explored the intraspecific phylogeography of a flightless orthopteran (the alpine scree weta, Deinacrida connectens) that is adapted to the alpine zone of South Island, New Zealand. We found that several mountain ranges and regions had their own reciprocally monophyletic, deeply differentiated lineages. Corrected genetic distance among lineages was 8.4% (Kimura 2-parameter [K2P]) / 13% (GTR + I + Gamma), whereas within-lineage distances were only 2.8% (K2P) / 3.2% (GTR + I + Gamma). We propose a model to explain this phylogeographical structure, which links the radiation of D. connectens to Pliocene mountain building, and maintenance of this structure through the combined effects of mountain-top isolation during Pleistocene interglacials and ice barriers to dispersal during glacials.


Subject(s)
Biological Evolution , Genetics, Population , Orthoptera/genetics , Phylogeny , Adaptation, Physiological , Animals , Climate , DNA, Mitochondrial/genetics , Electron Transport Complex IV/genetics , Models, Biological , Molecular Sequence Data , New Zealand , Polymorphism, Single-Stranded Conformational , Sequence Analysis, DNA
10.
Heredity (Edinb) ; 85(Pt 6): 586-92, 2000 Dec.
Article in English | MEDLINE | ID: mdl-11240625

ABSTRACT

Two chromosomal races (2n=17 and 2n=15; XO) of the weta Hemideina thoracica meet at the centre of a volcanic region in North Island, New Zealand. Five independent polymorphic genetic markers showed broadly coinciding, steep frequency clines from north to south across this zone beside the flooded crater, Lake Taupo. Three unlinked nuclear gene markers provide estimates of zone width that are at least twice the width of the chromosomal and mitochondrial clines, with cline centres displaced at least 2.5 km. The different zone widths and centres suggest that this hybrid zone is a semipermeable barrier reducing the introgression of the chromosomal markers more than genic markers. We estimate that this species of weta must have a dispersal rate of at least 100 m per generation using the time since the last Taupo eruption (1850 years ago), which covered an area of about 20 000 km2 with pyroclastic flow.


Subject(s)
Chromosomes/genetics , Hybridization, Genetic/genetics , Orthoptera/genetics , Volcanic Eruptions , Animals , Cytogenetic Analysis/statistics & numerical data , DNA, Mitochondrial/genetics , Genes, Insect/genetics , Isoenzymes/genetics , Male , Microsatellite Repeats/genetics , New Zealand , Orthoptera/enzymology
11.
New Phytol ; 145(3): 501-509, 2000 Mar.
Article in English | MEDLINE | ID: mdl-33862909

ABSTRACT

Patterns of molecular genetic variation were examined in seed collections of Plantago major and Plantago intermedia, used previously to investigate the variations in ozone (O3 ) resistance of these species across Europe. Total genomic DNA was amplified with random primers (random amplied polymorphic DNA (RAPD) and inter- single sequence repeats (SSR)) to produce 73 genetic markers. In addition, allozyme and chloroplast variations were surveyed. Genetic markers were examined for association with O3 resistance in 18 British populations of P. major as well as 27 continental European populations of P. major and P. intermedia. Two populations that exhibited increased resistance to O3 following several years' exposure to high O3 concentrations in the field showed decreased genetic variation over time. In addition, their genetic composition showed no drastic change, which suggests that the change in resistance to O3 was probably the result of selection on genotypes already present in local populations (selection in situ). It appears that selection for O3 resistance may occur in independent populations, and also may involve a number of genetically determined traits. Consequently the finding that plants with similar degrees of O3 resistance are not closely related was not unexpected. However, the finding of an association of several genetic markers with O3 resistance merits further investigation.

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