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1.
Public Health ; 230: 183-189, 2024 May.
Article in English | MEDLINE | ID: mdl-38565064

ABSTRACT

OBJECTIVES: To examine the associations between food insecurity and health, access to care, affordability of care, financial burden of care, and financial hardships among US adults during the COVID-19 pandemic and examine whether the associations were less pronounced among adults with safety nets. STUDY DESIGN: We conducted a retrospective longitudinal cohort study using the 2020-2021 Medical Expenditure Panel Survey. METHODS: Linear probability models were used to assess the associations between food insecurity in one year and the outcomes of interest in the following year while adjusting for baseline characteristics. We performed the analyses for the entire population and then conducted stratified analyses for adults with and without Supplemental Nutrition Assistance Program (SNAP) benefits or Medicaid coverage. RESULTS: Compared with food-secure adults, food-insecure adults were 9.1 percentage points less likely to report life satisfaction and 9.9, 10.2, and 13.2 percentage points more likely to experience delays in getting medical care, postpone or forgo medical care because of cost, and struggle with paying medical bills. Food-insecure adults were 30.4, 27.2, and 23.5 percentage points more likely to face challenges in affording necessities, paying utility bills, and meeting rent or mortgage payments on time than food-secure adults. Notably, the strengths of these associations were attenuated among adults with SNAP benefits or Medicaid coverage. CONCLUSIONS: Food insecurity was associated with poor health, limited access to and affordability of care, and a greater financial burden of care among US adults during the pandemic. Nevertheless, safety net programs can play a critical role in alleviating adverse consequences.


Subject(s)
COVID-19 , Food Assistance , Adult , United States/epidemiology , Humans , Financial Stress , Pandemics , Longitudinal Studies , Retrospective Studies , Food Supply , COVID-19/epidemiology , Food Insecurity , Costs and Cost Analysis , Health Services Accessibility
2.
Ultrasound Obstet Gynecol ; 62(1): 69-74, 2023 07.
Article in English | MEDLINE | ID: mdl-36864493

ABSTRACT

OBJECTIVES: To evaluate the prenatal characteristics of double aortic arch (DAA), assess the relative size of the arches and their growth during pregnancy, describe associated cardiac, extracardiac and chromosomal/genetic abnormalities and review postnatal presentation and clinical outcome. METHODS: This was a retrospective cohort study of all fetuses with a confirmed diagnosis of DAA seen in five specialized referral centers in London, UK, between October 2012 and November 2019. Cases were identified from the hospitals' fetal databases. Fetal echocardiographic findings, intracardiac and extracardiac abnormalities, genetic defects, computed tomography (CT) findings and postnatal clinical presentation and outcome were evaluated. RESULTS: A total of 79 fetuses with DAA were included. Of those assessed postnatally, 48.6% had an atretic left aortic arch (LAA), while 5.1% had an atretic LAA at the first fetal scan and were misdiagnosed antenatally with right aortic arch (RAA). The LAA was atretic in 55.8% of those who underwent CT. DAA was an isolated abnormality in 91.1% of cases; 8.9% of patients had an additional intracardiac abnormality and 2.5% had both intra- and extracardiac abnormalities. Among the 52 cases that underwent genetic testing, 11.5% had genetic abnormalities and, specifically, the 22q11 microdeletion was identified in 3.8% of patients. At a median follow-up of 993.5 days, 42.5% of patients had developed symptoms of tracheoesophageal compression (5.5% during the first month after birth) and 56.2% had undergone intervention. Statistical analysis using the χ-square test showed no significant relationship between morphology of DAA (patency of both aortic arches vs atretic LAA) and the need for intervention (P = 0.134), development of vascular ring symptoms (P = 0.350) or evidence of airway compression on CT (P = 0.193). CONCLUSIONS: Most cases of DAA can be diagnosed easily at midgestation, as typically both arches are patent with a dominant RAA at this stage. However, we found that the LAA had become atretic in approximately half of the cases postnatally, supporting the theory of differential growth of the arches during pregnancy. DAA is usually an isolated abnormality; however, thorough assessment is required to exclude associated intra- and extracardiac anomalies and to determine the need for invasive prenatal genetic testing. Postnatally, early clinical assessment is needed and CT scan should be considered, irrespective of the presence of symptoms. © 2023 The Authors. Ultrasound in Obstetrics & Gynecology published by John Wiley & Sons Ltd on behalf of International Society of Ultrasound in Obstetrics and Gynecology.


Subject(s)
Aortic Arch Syndromes , Vascular Ring , Female , Humans , Pregnancy , Aorta, Thoracic/diagnostic imaging , Aortic Arch Syndromes/diagnostic imaging , Aortic Arch Syndromes/genetics , Chromosome Aberrations , Diagnosis, Differential , Parturition , Pregnancy Outcome , Prenatal Diagnosis/methods , Retrospective Studies , Ultrasonography, Prenatal/methods , Vascular Ring/diagnostic imaging , Vascular Ring/genetics
3.
BJS Open ; 4(5): 904-913, 2020 10.
Article in English | MEDLINE | ID: mdl-32893988

ABSTRACT

BACKGROUND: Centralization of pancreatic surgery is currently called for owing to superior outcomes in higher-volume centres. Conversely, organizational and patient concerns speak for a moderation in centralization. Consensus on the optimal balance has not yet been reached. This observational study presents a volume-outcome analysis of a complete national cohort in a health system with long-standing centralization. METHODS: Data for all pancreatoduodenectomies in Norway in 2015 and 2016 were identified through a national quality registry and completed through electronic patient journals. Hospitals were dichotomized (high-volume (40 or more procedures/year) or medium-low-volume). RESULTS: Some 394 procedures were performed (201 in high-volume and 193 in medium-low-volume units). Major postoperative complications occurred in 125 patients (31·7 per cent). A clinically relevant postoperative pancreatic fistula occurred in 66 patients (16·8 per cent). Some 17 patients (4·3 per cent) died within 90 days, and the failure-to-rescue rate was 13·6 per cent (17 of 125 patients). In multivariable comparison with the high-volume centre, medium-low-volume units had similar overall complication rates, lower 90-day mortality (odds ratio 0·24, 95 per cent c.i. 0·07 to 0·82) and no tendency for a higher failure-to-rescue rate. CONCLUSION: Centralization beyond medium volume will probably not improve on 90-day mortality or failure-to-rescue rates after pancreatoduodenectomy.


ANTECEDENTES: Actualmente se aboga por la centralización de la cirugía pancreática debido a los mejores resultados obtenidos en los centros de mayor volumen. Por el contrario, la preocupación de las organizaciones y de los pacientes está en línea con la sobriedad en la centralización. Todavía no se ha alcanzado un consenso en el equilibrio óptimo. Este estudio observacional presenta un análisis de volumen-resultado de una cohorte nacional completa en un sistema de salud con largo tiempo de centralización. MÉTODOS: Se identificaron los datos de todas las duodenopancreatectomías realizadas en Noruega en 2015 y 2016 a través de un registro nacional de calidad y se completaron a través de los datos electrónicos de los pacientes. Los hospitales fueron dicotomizados (volumen alto (≥ 40 procedimientos/año) o volumen medio/bajo)) RESULTADOS: Se realizaron 394 procedimientos (201 versus 193 en unidades de volumen alto versus volumen medio/bajo). Un total de 125 pacientes (31,7%) presentaron complicaciones postoperatorias mayores. Se diagnosticó una fístula pancreática postoperatoria clínicamente relevante en 66 pacientes (16,8%). En total, 17 pacientes (4,3%) fallecieron dentro de los 90 días, y la tasa de fracaso de rescate fue de 17 de 125 (13,6%) pacientes. En el análisis multivariable de comparación con el centro de volumen alto, las unidades de volumen medio/bajo presentaron tasas de complicaciones generales iguales, menor mortalidad a los 90 días (razón de oportunidades, odds ratio, OR 0,2, i.c. del 95% 0,1-0,8) y sin tendencia a una mayor tasa de fracaso de rescate. CONCLUSIÓN: La centralización más allá del volumen medio probablemente no mejore la mortalidad a los 90 días o las tasas de fracaso de rescate después de la duodenopancreatectomía.


Subject(s)
Pancreatic Fistula/epidemiology , Pancreatic Neoplasms/surgery , Pancreaticoduodenectomy/mortality , Postoperative Complications/epidemiology , Aged , Cancer Care Facilities/organization & administration , Female , Hospitals, High-Volume/statistics & numerical data , Hospitals, Low-Volume/statistics & numerical data , Humans , Logistic Models , Male , Middle Aged , Multivariate Analysis , Norway/epidemiology , Pancreatic Neoplasms/mortality , Registries , Surgicenters/organization & administration , Survival Rate , Time Factors , Treatment Outcome
4.
Int J Infect Dis ; 81: 107-109, 2019 Apr.
Article in English | MEDLINE | ID: mdl-30641203

ABSTRACT

Methicillin-resistant Staphylococcus aureus (MRSA) clonal complex (CC) 398 has spread from pigs to humans, but rarely from person to person. This strain of MRSA has been considered less virulent than others. Livestock-associated MRSA CC398 (LA-MRSA CC398) is particularly known to colonize pig farmers. Recent studies have shown an increasing number of people colonized with LA-MRSA CC398 and invasive infections caused by LA-MRSA CC398. The case of a previously healthy, 61-year-old woman admitted to a Danish regional hospital is reported here. She presented with fever, severe back pain, and bilateral hyperreflexia of patellar and Achilles reflexes. Blood tests revealed leukocytosis and elevated C-reactive protein. Empiric antimicrobial therapy with intravenous piperacillin-tazobactam was initiated, but blood cultures grew MRSA and antimicrobial therapy was changed to intravenous vancomycin. Whole-genome sequencing showed that the MRSA strain belonged to LA-MRSA CC398 spa type t011 and was Panton-Valentine leukocidin-negative. Magnetic resonance imaging revealed an epidural abscess at the level of L1-L4. Surgery was performed and pus from the abscess grew MRSA. The duration of antimicrobial therapy was 12 weeks. This case report describes bacteremia with LA-MRSA CC398 in a previously healthy patient without exposure to livestock or previous admission to a hospital. This highlights the risk of person-to-person transmission of LA-MRSA CC398 and brings into question whether LA-MRSA CC398 may have a greater pathogenic potential than previously assumed.


Subject(s)
Bacteremia/etiology , Epidural Abscess/etiology , Methicillin-Resistant Staphylococcus aureus , Staphylococcal Infections/etiology , Swine Diseases/transmission , Animals , Anti-Bacterial Agents/therapeutic use , Female , Humans , Livestock , Methicillin-Resistant Staphylococcus aureus/genetics , Middle Aged , Staphylococcal Infections/drug therapy , Staphylococcal Infections/transmission , Swine
5.
Int J Infect Dis ; 76: 58-63, 2018 Nov.
Article in English | MEDLINE | ID: mdl-30176293

ABSTRACT

BACKGROUND: Denmark has a high incidence rate of candidaemia. A Nordic study suggested a higher Danish prevalence of haematological malignancies as an underlying reason. This nationwide study ascertained clinical characteristics of Danish candidaemia patients and investigated potential factors contributing to the high incidence and mortality. METHODS: Microbiological and clinical data for candidaemia patients in 2010-2011 were retrieved. 30-day mortality was estimated by hazard ratios (HR) with 95% confidence intervals (CI, Cox regression). RESULTS: Data were available for 912/973 candidaemia episodes (93.7%). Intensive care unit (ICU) held the largest share of patients (43.2%). Prevalent host factors were multi-morbidity (≥2 underlying diseases, 74.2%) and gastrointestinal disease (52.5%). Haematological disease was infrequent (7.8%). Risk factors included antibiotic exposure (90.5%), CVC (71.9%) and Candida colonisation (66.7%). 30-day mortality was 43.4%, and 53.6% in ICU. Mortality was lower for patients with recent abdominal surgery (HR 0.70, 95% CI: 0.54-0.92). CONCLUSION: A substantial prevalence of multi-morbidity and a high 30-day mortality was found. We hypothesise, that an increasing population of severely ill patients with prolonged supportive treatment and microbiological testing may in part explain the high candidaemia incidence in Denmark. Nationwide studies are warranted to clarify this issue.


Subject(s)
Candidemia/epidemiology , Adult , Aged , Aged, 80 and over , Candidemia/etiology , Candidemia/mortality , Denmark/epidemiology , Female , Humans , Incidence , Male , Middle Aged , Risk Factors
6.
Analyst ; 142(17): 3118-3126, 2017 Aug 21.
Article in English | MEDLINE | ID: mdl-28744529

ABSTRACT

Lipid exchange among citrem nanoparticles and an ethanol micellar solution containing soy phosphatidylcholine was investigated in situ by coupling small angle X-ray scattering with a microfluidic device. The produced soy phosphatidylcholine/citrem nanoparticles have great potential in the development of hemocompatible nanocarriers for drug delivery.


Subject(s)
Glycine max/chemistry , Microfluidic Analytical Techniques , Nanoparticles , Phosphatidylcholines/chemistry , Synchrotrons , Ethanol , Scattering, Small Angle , X-Ray Diffraction
7.
Methods Enzymol ; 582: 1-29, 2017.
Article in English | MEDLINE | ID: mdl-28062031

ABSTRACT

Single-molecule force spectroscopy techniques, including optical trapping, magnetic trapping, and atomic force microscopy, have provided unprecedented opportunities to understand biological processes at the smallest biological length scales. For example, they have been used to elucidate the molecular basis of muscle contraction and intracellular cargo transport along cytoskeletal filamentous proteins. Optical trapping is among the most sophisticated single-molecule techniques. With exceptionally high spatial and temporal resolutions, it has been extensively utilized to understand biological functions at the single molecule level, such as conformational changes and force-generation of individual motor proteins or force-dependent kinetics in molecular interactions. Here, we describe a new method, "Harmonic Force Spectroscopy (HFS)." With a conventional dual-beam optical trap and a simple harmonic oscillation of the sample stage, HFS can measure the load-dependent kinetics of transient molecular interactions, such as a human ß-cardiac myosin II interacting with an actin filament. We demonstrate that the ADP release rate of an individual human ß-cardiac myosin II molecule depends exponentially on the applied load, which provides a clue to understanding the molecular mechanism behind the force-velocity curve of a contracting cardiac muscle. The experimental protocol and the data analysis are simple, fast, and efficient. This chapter provides a practical guide to the method: basic concepts, experimental setup, step-by-step experimental protocol, theory, data analysis, and results.


Subject(s)
Cardiac Myosins/isolation & purification , Optical Tweezers , Single Molecule Imaging/methods , Actin Cytoskeleton , Cardiac Myosins/chemistry , Humans , Kinetics
9.
Clin Microbiol Infect ; 23(2): 98-103, 2017 Feb.
Article in English | MEDLINE | ID: mdl-27793736

ABSTRACT

OBJECTIVES: Given the increasing number of antifungal drugs and the emergence of resistant Aspergillus isolates, objective, automated and high-throughput antifungal susceptibility testing is important. The EUCAST E.Def 9.3 reference method for MIC determination of Aspergillus species relies on visual reading. Spectrophotometric reading was not adopted because of concern that non-uniform filamentous growth might lead to unreliable and non-reproducible results. We therefore evaluated spectrophotometric reading for the determination of MICs of antifungal azoles against Aspergillus fumigatus. METHODS: Eighty-eight clinical isolates of A. fumigatus were tested against four medical azoles (posaconazole, voriconazole, itraconazole, isavuconazole) and one agricultural azole (tebuconazole) with EUCAST E.Def 9.3. The visually determined MICs (complete inhibition of growth) were compared with spectrophotometrically determined MICs and essential (±1 twofold dilution) and categorical (susceptible/intermediate/resistant or wild-type/non-wild-type) agreement was calculated. Spectrophotometric data were analysed with regression analysis using the Emax model, and the effective concentration corresponding to 5% (EC5) was estimated. RESULTS: Using the 5% cut-off, high essential (92%-97%) and categorical (93%-99%) agreement (<6% errors) was found between spectrophotometric and visual MICs. The EC5 also correlated with the visually determined MICs with an essential agreement of 83%-96% and a categorical agreement of 90%-100% (<5% errors). CONCLUSIONS: Spectrophotometric determination of MICs of antifungal drugs may increase objectivity, and allow automation and high-throughput of EUCAST E.Def 9.3 antifungal susceptibility testing of Aspergillus species.


Subject(s)
Antifungal Agents/pharmacology , Aspergillosis/diagnosis , Aspergillosis/microbiology , Aspergillus fumigatus/drug effects , High-Throughput Screening Assays , Microbial Sensitivity Tests/methods , Spectrophotometry/methods , Aspergillus fumigatus/isolation & purification , Cytochrome P-450 Enzyme System/genetics , Dose-Response Relationship, Drug , Drug Resistance, Fungal , Fungal Proteins/genetics , Genotype , Humans , Mutation
10.
Methods Enzymol ; 581: 147-185, 2016.
Article in English | MEDLINE | ID: mdl-27793279

ABSTRACT

Structure and function of an individual biomolecule can be explored with minimum two fluorescent markers of different colors. Since the light of such markers can be spectrally separated and imaged simultaneously, the markers can be colocalized. Here, we describe the method used for such two-color colocalization microscopy. Then we extend it to fluorescent markers with fixed orientations and in intramolecular proximity. Our benchmarking of this extension produced two extra results: (a) we established short double-labeled DNA molecules as probes of 3D orientation of anything to which one can attach them firmly; (b) we established how to map with super-resolution between color-separated channels, which should be useful for all dual-color colocalization measurements with either fixed or freely rotating fluorescent molecules. Throughout, we use only simple means: from each color-separated microscope image in a time-lapse movie, we simultaneously determine both the relative (x,y)-separation of the fluorophores and their individual orientations in space, both with accuracy and precision. The relative positions and orientations of two domains of the same molecule are thus time-resolved. Using short double-stranded DNA (dsDNA) molecules internally labeled with two fixed fluorophores, we (i) demonstrate the accuracy and precision of our localization- and mapping-methods, using the known structure of dsDNA as benchmark; (ii) resolve 10 base pair differences in fluorophore separations; (iii) determine the unique 3D orientation of each DNA molecule.


Subject(s)
DNA/isolation & purification , Microscopy, Fluorescence/methods , Molecular Imaging/methods , Single Molecule Imaging/methods , DNA/chemistry , Fluorescent Dyes/chemistry , Nucleic Acid Conformation
11.
Sci Rep ; 6: 33180, 2016 09 12.
Article in English | MEDLINE | ID: mdl-27615360

ABSTRACT

In East Greenland, a dramatic increase of tuberculosis (TB) incidence has been observed in recent years. Classical genotyping suggests a genetically similar Mycobacterium tuberculosis (Mtb) strain population as cause, however, precise transmission patterns are unclear. We performed whole genome sequencing (WGS) of Mtb isolates from 98% of culture-positive TB cases through 21 years (n = 182) which revealed four genomic clusters of the Euro-American lineage (mainly sub-lineage 4.8 (n = 134)). The time to the most recent common ancestor of lineage 4.8 strains was found to be 100 years. This sub-lineage further diversified in the 1970s, and massively expanded in the 1990s, a period of lowered TB awareness in Greenland. Despite the low genetic strain diversity, WGS data revealed several recent short-term transmission events in line with the increasing incidence in the region. Thus, the isolated setting and the uniformity of circulating Mtb strains indicated that the majority of East Greenlandic TB cases originated from one or few strains introduced within the last century. Thereby, the study shows the consequences of even short interruptions in TB control efforts in previously TB high incidence areas and demonstrates the potential role of WGS in detecting ongoing micro epidemics, thus guiding public health efforts in the future.


Subject(s)
Mycobacterium tuberculosis/genetics , Tuberculosis, Pulmonary/transmission , Adolescent , Adult , Child , Female , Genotype , Greenland/epidemiology , Humans , Incidence , Male , Molecular Typing , Retrospective Studies , Tuberculosis, Pulmonary/epidemiology , Tuberculosis, Pulmonary/microbiology , Whole Genome Sequencing , Young Adult
12.
Physiol Meas ; 37(4): 544-53, 2016 Apr.
Article in English | MEDLINE | ID: mdl-26999470

ABSTRACT

Controversial data exist on acute and chronic effects of competitive sports on central hemodynamics and arterial stiffness. We investigated chronic as well as acute training effects in professional rowers. The trial was planned as a non-randomized, controlled pilot-study comparing athletes and controls. 13 German national team rowers (24.1 ± 1.5 years) and 12 controls (23.8 ± 0.8 years) participated. Aortic, brachial hemodynamics and arterial stiffness were measured (Arteriograph, TensioMed(®), Hungary) before and after a standardized exercise test. Chronic heart rate (49 [Formula: see text] 2 bpm versus 70 [Formula: see text] 2 bpm, p < 0.05) as well as brachial diastolic pressure (65 [Formula: see text] 2 mmHg versus 74 [Formula: see text] 2 mmHg, p < 0.05) was significantly lower in rowers. Physical power (305 [Formula: see text] 63 versus 158 [Formula: see text] 60 W, p < 0.001) was better. Chronic aortic pulse pressure (41.6 [Formula: see text] 6.0 versus 35.2 [Formula: see text] 3.8 mmHg; p < 0.01) and AIx (9.1 [Formula: see text] 5.4 versus 7.0 [Formula: see text] 10.2; p < 0.01) were significantly higher in athletes. After the all-out test (acute effects) pulse wave velocity (rowers: 6.6 [Formula: see text] 1.2 m s(-1) versus 7.8 [Formula: see text] 1.6 m s(-1), p < 0.001; control group 6.0 [Formula: see text] 0.4 m s(-1) versus 8.0 [Formula: see text] 1.4 m s(-1), p = 0.005) and heart rate (rowers: 49 [Formula: see text] 2 bpm versus 91 [Formula: see text] 3 bpm, p < 0.001; control group 70 [Formula: see text] 2 bpm versus 92 [Formula: see text] 4 bpm, p < 0.001) increased significantly in both groups. The controls' aortic AIx (7.0 [Formula: see text] 10.2 versus 2.0 [Formula: see text] 6.0; p < 0.01) decreased significantly after exercise. Professional rowers showed higher chronic aortic pulse pressure and arterial stiffness. Given the risk associated with elevated aortic pulse pressure and AIx for development of cardiovascular diseases, longterm observations of professional rowers are needed with respect to arterial stiffness and prognosis. Furthermore the acute effects need additional research.


Subject(s)
Aorta/physiology , Brachial Artery/physiology , Hemodynamics , Vascular Stiffness , Blood Pressure , Female , Humans , Male , Rest/physiology , Young Adult
13.
Int J Epidemiol ; 45(6): 2122-2130, 2016 12 01.
Article in English | MEDLINE | ID: mdl-28338723

ABSTRACT

Background: The potential non-specific effects of BCG (Bacillus Calmette-Guérin) vaccination, with reported reduction of infectious disease morbidity among vaccinated children, in addition to the protective effect against tuberculosis (TB), are highly debated. In Greenland, BCG vaccination was introduced in 1955, but temporarily discontinued from 1991 to 1996 due to nationwide policy changes. Using the transient vaccination stop, we aimed to investigate possible non-specific effects of BCG vaccination by measuring nation-wide hospitalization rates due to infectious diseases other than TB among vaccinated and unvaccinated children. Methods: A retrospective cohort study including all children born in Greenland aged 3 months to 3 years from 1989 to 2004. A personal identification number assigned at birth allowed for follow-up through national registers. Information on hospitalization due to infectious diseases was obtained from the Greenlandic inpatient register using ICD-8 and ICD-10 codes. Participants with notified TB were censored. Incidence rate ratios (IRR) were estimated using Poisson regression. Results: Overall, 19 363 children, hereof 66% BCG-vaccinated, were followed for 44 065 person-years and had 2069 hospitalizations due to infectious diseases. IRRs of hospitalization in BCG-vaccinated as compared with BCG-unvaccinated children were 1.07 [95% confidence interval (CI) 0.96-1.20] for infectious diseases overall, and specifically 1.10 (95% CI 0.98-1.24) for respiratory tract infections. Among BCG-vaccinated children aged 3 to 11 months, the IRR of hospitalization due to infectious diseases was 1.00 (95% CI 0.84-1.19) as compared with BCG-unvaccinated children. Conclusion: Our results do not support the hypothesis that neonatal BCG vaccination reduces morbidity in children caused by infectious diseases other than TB.


Subject(s)
BCG Vaccine/therapeutic use , Respiratory Tract Infections/epidemiology , Tuberculosis/epidemiology , Tuberculosis/prevention & control , Vaccination/statistics & numerical data , Child, Preschool , Female , Greenland/epidemiology , Hospitalization/statistics & numerical data , Humans , Infant , International Classification of Diseases , Male , Registries , Regression Analysis , Retrospective Studies
14.
J Clin Microbiol ; 53(8): 2716-9, 2015 Aug.
Article in English | MEDLINE | ID: mdl-26019203

ABSTRACT

Culturing before DNA extraction represents a major time-consuming step in whole-genome sequencing of slow-growing bacteria, such as Mycobacterium tuberculosis. We report a workflow to extract DNA from frozen isolates without reculturing. Prepared libraries and sequence data were comparable with results from recultured aliquots of the same stocks.


Subject(s)
DNA, Bacterial/isolation & purification , Freezing , Mycobacterium tuberculosis/genetics , Preservation, Biological , Genome, Bacterial , Humans , Sequence Analysis, DNA
15.
Clin Radiol ; 70(4): 446-56, 2015 Apr.
Article in English | MEDLINE | ID: mdl-25623513

ABSTRACT

Pulmonary cavitation causes significant morbidity and mortality. Early diagnosis of the presence and aetiology of a cavity is therefore crucial in order to avoid further demise in both the localized pulmonary and systemic disorders that may manifest with pulmonary cavity formation. Multidetector CT has become the principal diagnostic technique for detecting pulmonary cavitation and its complications. This review provides an overview of the aetiologies and their imaging findings using this technique. Combining a literature review with case illustration, a synopsis of the different imaging features and constellations is provided, which may suggest a particular cause and aid the differentiation from diseases with similar findings.


Subject(s)
Lung Diseases/diagnostic imaging , Lung/diagnostic imaging , Multidetector Computed Tomography/methods , Diagnosis, Differential , Humans , Immune System Diseases/complications , Lung Diseases/etiology , Lung Neoplasms/complications , Respiratory Tract Infections/complications , Vascular Diseases/complications
16.
Eur J Radiol ; 83(12): 2240-2254, 2014 Dec.
Article in English | MEDLINE | ID: mdl-25241050

ABSTRACT

The impact of absent pulmonary arterial and venous flow on the pulmonary parenchyma depends on a host of factors. These include location of the occlusive insult, the speed at which the occlusion develops and the ability of the normal dual arterial supply to compensate through increased bronchial arterial flow. Pulmonary infarction occurs when oxygenation is cut off secondary to sudden occlusion with lack of recruitment of the dual supply arterial system. Thromboembolic disease is the commonest cause of such an insult but a whole range of disease processes intrinsic and extrinsic to the pulmonary arterial and venous lumen may also result in infarcts. Recognition of the presence of infarction can be challenging as imaging manifestations often differ from the classically described wedge shaped defect and a number of weighty causes need consideration. This review highlights aetiologies and imaging appearances of pulmonary infarction, utilising cases to illustrate the essential role of a multimodality imaging approach in order to arrive at the appropriate diagnosis.


Subject(s)
Pulmonary Infarction/diagnosis , Pulmonary Infarction/etiology , Humans , Multimodal Imaging
17.
Br. j. surg ; 101(10): 1209-1229, sep. 2014.
Article in English | BIGG - GRADE guidelines | ID: biblio-965353

ABSTRACT

"BACKGROUND: Application of evidence-based perioperative care protocols reduces complication rates, accelerates recovery and shortens hospital stay. Presently, there are no comprehensive guidelines for perioperative care for gastrectomy. METHODS: An international working group within the Enhanced Recovery After Surgery (ERAS®) Society assembled an evidence-based comprehensive framework for optimal perioperative care for patients undergoing gastrectomy. Data were retrieved from standard databases and personal archives. Evidence and recommendations were classified according to the Grading of Recommendations, Assessment, Development and Evaluation (GRADE) system and were discussed until consensus was reached within the group. The quality of evidence was rated 'high', 'moderate', 'low' or 'very low'. Recommendations were graded as 'strong' or 'weak'. RESULTS: The available evidence has been summarized and recommendations are given for 25 items, eight of which contain procedure-specific evidence. The quality of evidence varies substantially and further research is needed for many issues to improve the strength of evidence and grade of recommendations. CONCLUSION: The present evidence-based framework provides comprehensive advice on optimal perioperative care for the patient undergoing gastrectomy and facilitates multi-institutional prospective cohort registries and adequately powered randomized trials for further research."


Subject(s)
Humans , Preoperative Care , Gastrectomy , Postoperative Care , Postoperative Complications , Water-Electrolyte Imbalance , Water-Electrolyte Imbalance/prevention & control , Bed Rest , Alcohol Drinking , Analgesia, Epidural , Cathartics , Cathartics/therapeutic use , Drainage , Nutritional Support , Antibiotic Prophylaxis , Decompression, Surgical , Dietary Supplements , Postoperative Nausea and Vomiting , Counseling , Glucose Metabolism Disorders , Smoking Prevention , Hypothermia , Anticoagulants , Anticoagulants/therapeutic use , Nerve Block
18.
Br J Surg ; 101(10): 1209-29, 2014 Sep.
Article in English | MEDLINE | ID: mdl-25047143

ABSTRACT

BACKGROUND: Application of evidence-based perioperative care protocols reduces complication rates, accelerates recovery and shortens hospital stay. Presently, there are no comprehensive guidelines for perioperative care for gastrectomy. METHODS: An international working group within the Enhanced Recovery After Surgery (ERAS®) Society assembled an evidence-based comprehensive framework for optimal perioperative care for patients undergoing gastrectomy. Data were retrieved from standard databases and personal archives. Evidence and recommendations were classified according to the Grading of Recommendations, Assessment, Development and Evaluation (GRADE) system and were discussed until consensus was reached within the group. The quality of evidence was rated 'high', 'moderate', 'low' or 'very low'. Recommendations were graded as 'strong' or 'weak'. RESULTS: The available evidence has been summarized and recommendations are given for 25 items, eight of which contain procedure-specific evidence. The quality of evidence varies substantially and further research is needed for many issues to improve the strength of evidence and grade of recommendations. CONCLUSION: The present evidence-based framework provides comprehensive advice on optimal perioperative care for the patient undergoing gastrectomy and facilitates multi-institutional prospective cohort registries and adequately powered randomized trials for further research.


Subject(s)
Gastrectomy/methods , Alcohol Drinking/prevention & control , Analgesia, Epidural/methods , Antibiotic Prophylaxis , Anticoagulants/therapeutic use , Bed Rest , Cathartics/therapeutic use , Counseling , Decompression, Surgical/methods , Dietary Supplements , Drainage/methods , Evidence-Based Medicine , Glucose Metabolism Disorders/prevention & control , Humans , Hypothermia/prevention & control , Nerve Block/methods , Nutritional Support , Postoperative Care/methods , Postoperative Complications/prevention & control , Postoperative Nausea and Vomiting/prevention & control , Preoperative Care/methods , Smoking Prevention , Water-Electrolyte Imbalance/prevention & control
19.
J Clin Microbiol ; 51(12): 4040-4, 2013 Dec.
Article in English | MEDLINE | ID: mdl-24068008

ABSTRACT

Transmission of Mycobacterium tuberculosis continues at high rates among Greenland-born persons in Greenland and Denmark, with 203 and 450 notified cases per 10(5) population, respectively, in the year 2010. Here, we document that the predominant M. tuberculosis outbreak strain C2/1112-15 of Danish origin has been transmitted to Greenland-born persons in Denmark and subsequently to Greenland, where it is spreading at worrying rates and adding to the already heavy tuberculosis burden in this population group. It is now clear that the C2/1112-15 strain is able to gain new territories using a new population group as the "vehicle." Thus, it might have the ability to spread even further, considering the potential clinical consequences of strain diversity such as that seen in the widely spread Beijing genotype. The introduction of the predominant M. tuberculosis outbreak strain C2/1112-15 into the Arctic circumpolar region is a worrying tendency which deserves attention. We need to monitor whether this strain already has, or will, spread to other countries.


Subject(s)
Disease Outbreaks , Mycobacterium tuberculosis/classification , Mycobacterium tuberculosis/isolation & purification , Tuberculosis/epidemiology , Tuberculosis/microbiology , Adolescent , Adult , Aged , Aged, 80 and over , Child , Child, Preschool , Denmark/epidemiology , Ethnicity , Female , Genotype , Greenland/epidemiology , Humans , Incidence , Infant , Infant, Newborn , Male , Middle Aged , Molecular Typing , Retrospective Studies , Tuberculosis/transmission , Young Adult
20.
Clin Radiol ; 68(3): e164-75, 2013 Mar.
Article in English | MEDLINE | ID: mdl-23245272

ABSTRACT

Incidental atrial filling defect on multidetector computed tomography (MDCT) is an important radiological finding, as irrespective of its nature, it may nevertheless be of considerable importance for correct diagnostic workup. MDCT is not the first-line imaging technique of choice for characterization of intra-atrial masses, but is a commonly performed examination and hence offers the opportunity to pick up hitherto unsuspected atrial lesions. This review highlights key CT imaging features that help to differentiate normal variants and artefacts from a true abnormality, distinguish benign from malignant intra-atrial tumours, and characterize non-neoplastic atrial masses.


Subject(s)
Heart Atria/diagnostic imaging , Heart Diseases/diagnostic imaging , Multidetector Computed Tomography/methods , Artifacts , Cardiac-Gated Imaging Techniques/methods , Diagnosis, Differential , Humans
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