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1.
Euro Surveill ; 16(44)2011 Nov 03.
Article in English | MEDLINE | ID: mdl-22085620

ABSTRACT

The prevalence of herpes simplex virus (HSV) type-specific IgG was determined in sera taken in 1999 to 2006 from 1,100 children aged 0­18 years, 800 blood donors and 200 pregnant women in Thuringia, Germany, using tests based on the HSV glycoproteins (g) gG. By the age of 10­12 years, HSV-1 IgG prevalence reached 57.3%, rising to 69.3% by the age of 16­18 years and to 78.0% by the age of 28­30 years. Between 2.7% and 4.7% of the children aged up to 15 years had HSV-2 antibodies, increasing to 7.3% at the age of 16­18 years and to 13.6% among adults. The prevalence of HSV-1 antibodies among girls was significantly lower than among boys and a significantly higher prevalence of HSV-2 IgG in women than in men was detected. The reduced incidence of HSV-1 infections during childhood, especially in girls, has to be followed up since a higher number of primary HSV-2 infections may result. Between 2.7% and 4.7% of all children tested seemed to acquire HSV-2 by intrauterine or neonatal infection. We also compared the use of gG-1 with gC-1: the agreement of 97.2% between the two ELISAs suggests that gG-1 and gC-1 can be considered equivalent antigenic targets.


Subject(s)
Herpes Simplex/epidemiology , Herpesvirus 1, Human/immunology , Herpesvirus 2, Human/immunology , Adolescent , Adult , Blood Donors , Child , Child, Preschool , Enzyme-Linked Immunosorbent Assay , Female , Germany/epidemiology , Hepatitis Antigens/immunology , Herpes Simplex/blood , Herpes Simplex/immunology , Herpes Simplex/virology , Herpesvirus 1, Human/pathogenicity , Herpesvirus 2, Human/pathogenicity , Humans , Immunoglobulin G/blood , Infant , Male , Pregnancy , Seroepidemiologic Studies , Viral Envelope Proteins/blood , Viral Envelope Proteins/immunology , Young Adult
2.
J Virol Methods ; 175(2): 156-62, 2011 Aug.
Article in English | MEDLINE | ID: mdl-21596064

ABSTRACT

Hepatitis E virus (HEV), a major cause of acute viral hepatitis in humans in many developing countries, is highly prevalent in the pig population worldwide. The objective of this study was to assess the capability of three porcine prototypes of a human enzyme-linked immunosorbent assay (ELISA), an in-house ELISA and a line-immunoassay (LIA) to detect anti-HEV antibodies in pigs infected experimentally with HEV (n = 57), known to be negative for HEV infection (n = 27), or with unknown exposure to HEV infection (field samples, n = 90). All 27 samples from non-infected pigs were negative with all five assays. The earliest detection of anti-HEV antibodies occurred at 14 days post-inoculation (dpi) with four of five assays. From 42 dpi, all samples from infected pigs were detected correctly as anti-HEV positive. Kappa analysis demonstrated substantial agreement among tests (0.62-1.00) at 14 dpi and complete agreement (1.00) at 56 dpi. The overall area under the curve for all quantitative tests as determined by receiver operator characteristic analysis ranged from 0.794 to 0.831 indicating moderate accuracy. The results showed that all five assays can detect anti-HEV IgG antibodies accurately in pigs infected experimentally with HEV. In field samples, a higher prevalence of anti-HEV IgG was found in breeding herds than in growing pigs (100% versus 66.7-93.9%). These serological assays should be very useful in veterinary diagnostic labs for HEV diagnosis in swine.


Subject(s)
Antibodies, Viral/blood , Clinical Laboratory Techniques/methods , Hepatitis E virus/immunology , Hepatitis E/veterinary , Immunoglobulin G/blood , Swine Diseases/diagnosis , Animals , Hepatitis E/diagnosis , Immunoenzyme Techniques/methods , Swine , Swine Diseases/virology
3.
Article in English | MEDLINE | ID: mdl-16316402

ABSTRACT

In order to improve serodiagnostic methods for the determination of the state of human parovirus B19 infection, a new test system, recomLine Parvovirus, based on the use of recombinant antigens, has been developed and evaluated. The test system combines the advantages of enzyme-linked immunosorbent assay (ELISA) methods with those of the Western blot technique. For the recombinant line assay, five antigens of human parvovirus B19 that were recombinantly produced in Escherichia coli were applied directly on nitrocellulose membranes: VP2, the aminoterminal and the carboxyterminal domain of VP1 (VP-N and VP-C), VP-1S another fragment of VP-N and NS1. In addition, empty virus particles isolated from eukaryotic cell cultures were also applied. The recombinant-line assay was used to detect human IgG and IgM antibodies directed against human parvovirus B19. In addition, the avidity of the IgG antibodies was investigated. The recombinant line assay was evaluated using 87 human serum samples of patients recently infected with human parvovirus B19 including 10 samples of three infection time courses and 100 serum samples of healthy blood donors. All results were compared with commercially available ELISAs. In the case of discrepancies, Western blot analysis was performed. The data revealed the recombinant line assay to be highly sensitive and specific. The individual determination of the human immune response against several recombinant antigens covering the structural proteins of human parvovirus B19 gives a deeper insight into the actual status of infection. In addition, the determination of IgG avidity against these individual recombinant antigens enables a more precise and differentiated picture of the infection event.


Subject(s)
Antibodies, Viral/blood , Antibody Affinity , Antigens, Viral/immunology , Parvoviridae Infections/diagnosis , Parvovirus B19, Human/immunology , Pregnancy Complications, Infectious/diagnosis , Antibodies, Viral/immunology , Case-Control Studies , Enzyme-Linked Immunosorbent Assay , Female , Humans , Immunoglobulin G/blood , Immunoglobulin G/immunology , Immunoglobulin M/blood , Immunoglobulin M/immunology , Parvoviridae Infections/blood , Predictive Value of Tests , Pregnancy , Pregnancy Complications, Infectious/blood , Recombinant Proteins/immunology
4.
Biotechniques ; 29(2): 268-70, 2000 Aug.
Article in English | MEDLINE | ID: mdl-10948427

ABSTRACT

A common problem in automated DNA sequencing when applying the Sanger chain termination method is ambiguous base calling caused by band compressions. Band compressions are caused by anomalies in the migration behavior of certain DNA fragments in the polyacrylamide gel because of intramolecular base pairing between guanine and cytosine residues. To reduce such undesired secondary structures, several modifications of the sequencing reaction parameters have been performed previously. Here, we have applied mixtures of the nucleotide analogs 7-deaza-dGTP and dITP instead of dGTP in the cycle sequencing reaction and in combination with varying buffer conditions. Band compressions were particularly well resolved, and reading length was optimal when a ratio of 7-deaza-dGTP:dITP of 4:1 was used in the in vitro DNA synthesis with AmpliTaq FS DNA polymerase. We conclude that the incorporation of both nucleotide analogs at these particular ratios leads to heterogeneous DNA chains that result in a reduction or elimination of intramolecular base pairing and thus a higher accuracy in the base assignment.


Subject(s)
Deoxyguanine Nucleotides/metabolism , Inosine Triphosphate/analogs & derivatives , Inosine Triphosphate/metabolism , Sequence Analysis, DNA/methods , Base Pairing , DNA, Single-Stranded/metabolism , Electrophoresis, Polyacrylamide Gel , Nucleic Acid Conformation , Taq Polymerase/metabolism , Templates, Genetic
5.
J Virol Methods ; 57(1): 71-85, 1996 Mar.
Article in English | MEDLINE | ID: mdl-8919825

ABSTRACT

Serodiagnosis of Epstein-Barr virus (EBV) infection is currently based on the detection of antibodies to distinct EBV antigens by immunofluorescence and enzyme-linked immunosorbent assay-based tests, or in part on the detection of heterophile antibodies by the Paul-Bunnell-Davidson heterophile assay. In the past few years, the specificity and the sensitivity of serodiagnostic assay systems has been improved considerably by the use of purified recombinant EBV antigens. Screening of EBV-positive sera for antigenic reactivities by immunoprecipitation with extracts of EBV-positive cells revealed a 23-kDa protein (p23) that was recognized by antibodies from all EBV carriers tested. Open reading frame BLRF2 was identified as the coding region for this protein. After cloning and high-level expression of the BLRF2 open reading frame as DHFR fusion protein in Escherichia coli, the recombinant protein was purified to near homogeneity with the help of continuous elution electrophoresis. Sera from both EBV-positive and -negative donors were screened by immunoblot analysis and enzyme-linked immunosorbent assay for IgM and IgG antibodies against the EBV-encoded protein p23. Since anti-p23 antibodies were not detectable in 30 of 30 EBV-negative sera, and 294 of 302 EBV-positive sera had either IgM and/or IgG antibody responses to this protein, recombinant p23 seems to be a useful diagnostic marker for EBV-infection.


Subject(s)
Antigens, Viral/genetics , Gene Expression , Viral Proteins/genetics , Antibodies, Viral/blood , Antibodies, Viral/immunology , Antigens, Viral/immunology , Base Sequence , DNA Primers , Escherichia coli , Herpesvirus 4, Human/genetics , Humans , Molecular Sequence Data , Predictive Value of Tests , Recombinant Fusion Proteins/genetics , Tetrahydrofolate Dehydrogenase/genetics , Viral Proteins/immunology , Viral Proteins/isolation & purification
6.
J Reprod Med ; 41(1): 55-8, 1996 Jan.
Article in English | MEDLINE | ID: mdl-8855077

ABSTRACT

BACKGROUND: The coexistence of a hydatidiform mole with a normal, live fetus at near term is a rare occurrence. Few cases have been reported. When a molar pregnancy is incurred, the patient is usually encouraged to terminate the pregnancy due to the possibility of developing persistent trophoblastic disease or choriocarcinoma. The low probability of carrying the fetus to term is often due to development of maternal symptoms, including preeclampsia and vaginal bleeding. CASE: At 36 weeks' gestation a woman gave birth to a live, healthy infant who was found to coexist with a complete hydatidiform mole. This report discusses the clinical presentation, ultrasound findings and follow-up recommendations for patients presenting with gestational trophoblastic disease. CONCLUSION: A complete mole can coexist with a normal, healthy fetus who can be carried to term, with a good outcome.


Subject(s)
Fetus , Hydatidiform Mole , Uterine Neoplasms , Adult , Female , Humans , Hydatidiform Mole/complications , Hydatidiform Mole/pathology , Pregnancy , Uterine Neoplasms/complications , Uterine Neoplasms/pathology
7.
Dev Biol Stand ; 84: 171-7, 1995.
Article in English | MEDLINE | ID: mdl-7796951

ABSTRACT

In the absence of a truly representative animal model, the question of whether EBV-related diseases can be prevented by a vaccine has been studied for the first time in humans. A live recombinant virus based on the licensed vaccinia strain Tien Tan, expressing under the 11K vaccinia promoter the major EBV membrane antigen BNLF-1 MA (gp 220-340), was constructed and tested in three different human populations: EBV-positive and vaccinia-virus-exposed adults; EBV-positive, non-vaccinia-virus-exposed juveniles; and EBV and vaccinia virus-naive infants. No significant titre variations for EBV were observed in the adults, but EBV-neutralising titres increased in the vaccinated juveniles, while antibodies to VCA of EBV remained unchanged. All nine vaccinated infants developed antibodies to MA (membrane antigen) with neutralising properties in vitro; three of these infants were infected by EBV via natural routes over a period of 16 months after vaccination and all ten unvaccinated control infants became infected. It has been shown for the first time that protection against and/or delay of EBV infection by the natural route is possible in humans and that live vaccinia vectors can be used and are efficacious.


Subject(s)
Herpesvirus 4, Human/immunology , Vaccines, Synthetic/pharmacology , Vaccinia virus/genetics , Viral Vaccines/pharmacology , Adult , Animals , Antibodies, Viral/biosynthesis , Antigens, Surface/genetics , Antigens, Viral/genetics , Child, Preschool , Gene Expression , Herpesvirus 4, Human/genetics , Humans , Infant , Infectious Mononucleosis/prevention & control , Neutralization Tests , Plasmids , Vaccines, Synthetic/genetics , Viral Vaccines/genetics
8.
Med Microbiol Immunol ; 182(1): 37-50, 1993 Mar.
Article in English | MEDLINE | ID: mdl-8098841

ABSTRACT

The ospC gene coding for the outer surface protein OspC and the fla gene coding for the flagellin have been investigated in three different Borrelia burgdorferi sensu lato strains. These strains (the North American strain B31 and the European strains PKo and PBi) derive from various biological sources (lxodes dammini, human skin and human CSF) and belong to three different B. burgdorferi OspA serotypes and genospecies (OspA serotype 1, B. burgdorferi sensu stricto; OspA serotype 2, group VS461 and OspA serotype 4, B. garinii, respectively). The ospC and fla genes of the respective strains have been amplified by polymerase chain reaction, cloned in pUC8 and sequenced. The fla as well as the ospC genes were different among the three strains investigated. In general the fla genes are more conserved than the ospC genes. The fla genes have the same length of 1008 nucleotides coding for proteins of 336 amino acids, whereas the ospC genes differ in length. The ospC genes of strains B31, PKo and PBi have 630, 636 and 621 nucleotides encoding proteins of 210, 212 and 207 amino acids, respectively. The ospC genes exhibit sequence identities between 70% and 74% among each other, sequence identities of the fla genes are in the range 96-97%. The ospC genes could be expressed in Escherichia coli to obtain proteins with and without leader peptides. The expression of the fla gene and an internal gene fragment resulted in the complete flagellin protein and a truncated protein (amino acids 129-251). The different ospC and fla gene products were immunoreactive with monoclonal antibodies and human sera and, thus, enlarge the spectrum of recombinant antigens to improve antibody detection in patients with Lyme borreliosis.


Subject(s)
Antigens, Bacterial , Bacterial Outer Membrane Proteins , Bacterial Proteins/genetics , Borrelia burgdorferi Group/genetics , Flagellin/genetics , Genes, Bacterial , Amino Acid Sequence , Bacterial Proteins/biosynthesis , Bacterial Proteins/chemistry , Bacterial Proteins/immunology , Base Sequence , Blotting, Western , Borrelia burgdorferi Group/chemistry , Cloning, Molecular , Escherichia coli/genetics , Flagellin/biosynthesis , Flagellin/chemistry , Flagellin/immunology , Gene Expression Regulation, Bacterial , Humans , Lyme Disease/immunology , Molecular Sequence Data , Polymerase Chain Reaction , Polymorphism, Restriction Fragment Length , Protein Sorting Signals/analysis , Recombinant Proteins/biosynthesis , Recombinant Proteins/chemistry , Recombinant Proteins/genetics , Recombinant Proteins/immunology , Sequence Homology, Amino Acid
9.
Arch Virol Suppl ; 4: 179-83, 1992.
Article in English | MEDLINE | ID: mdl-1333321

ABSTRACT

A cDNA fragment corresponding to the nonstructural gene region of Hepatitis C virus was cloned and sequenced. cDNA was obtained by reverse transcription of viral RNA extracted from serum of a German patient with chronic post transfusion hepatitis. "Nested" PCR resulted in a cDNA fragment of 345 nt. The sequence showed a homology of 96% to the American prototype HCV.


Subject(s)
Genes, Viral/genetics , Hepacivirus/genetics , Hepatitis C/genetics , Hepatitis, Chronic/genetics , RNA, Viral/blood , Base Sequence , Hepatitis C/epidemiology , Hepatitis, Chronic/epidemiology , Humans , Molecular Sequence Data , Polymerase Chain Reaction/methods , Sequence Homology, Nucleic Acid
10.
Arch Virol ; 127(1-4): 117-37, 1992.
Article in English | MEDLINE | ID: mdl-1456888

ABSTRACT

Antigens in a particulate conformation were shown to be highly immunogenic in mammals. For this reason, the particle forming capacity of derivatives of the HIV-1 group specific core antigen p55 gag was assayed and compared dependent on various expression systems: recombinant bacteria, vaccinia- and baculoviruses were established encoding the entire core protein p55 either in its authentic sequence or lacking the myristylation consensus signal. Moreover, p55 gag was expressed in combination with the protease (p55-PR) or with the entire polymerase (p55-pol), respectively. Budding of 100-160 nm p55 core particles, resembling immature HIV-virions, was observed in the eucaryotic expression systems only. In comparison to the vaccinia virus driven expression of p55 in mammalian cells, considerably higher yields of particulate core antigen were obtained by infection of Spodoptera frugiperda (Sf9) insect cells with the recombinant Autographa californica nuclear polyhedrosis (AcMNPV) baculovirus. Mutation of the NH2-terminal myristylation signal sequence prevented budding of the immature core particles. Expression of the HIV p55-PR gene construct by recombinant baculovirus resulted in complete processing of the p55 gag precursor molecule in this system. The introduction of an artificial frameshift near the natural frameshift site resulted in constitutive expression of the viral protease and complete processing of p55, both in Escherichia coli and in vaccinia virus infected cells. Interestingly, significant processing of p55 resembling that of HIV infected H9 cells could also be achieved in the vaccinia system by fusing the entire pol gene to the gag gene. Moreover, processing was not found to be dependent on amino-terminal myristylation of the gag procursor molecule, which is in contrast to observations with type C and type D retrovirus. However, complete processing of p55 into p24, p17, p9 and p6 abolished particle formation. Purified immature HIV-virus like particles were highly immunogenic in rabbits, leading to a strong humoral immune response after immunization. Empty immature p55 gag particles represent a noninfectious and attractive candidate for a basic vaccine component.


Subject(s)
AIDS Vaccines/immunology , Gene Products, gag/genetics , Gene Products, gag/immunology , HIV-1/genetics , Protein Precursors/genetics , Baculoviridae/genetics , Base Sequence , Capsid/genetics , Capsid/immunology , Cloning, Molecular , Escherichia coli/genetics , Gene Products, gag/metabolism , Genes, Viral , Genes, gag , Genetic Vectors , Molecular Sequence Data , Oligodeoxyribonucleotides/chemistry , Protein Precursors/immunology , Protein Precursors/metabolism , Protein Processing, Post-Translational , Recombinant Proteins/immunology , Vaccines, Synthetic/immunology , Vaccinia virus/genetics , Viral Structural Proteins/genetics
11.
Gene ; 103(2): 163-9, 1991 Jul 22.
Article in English | MEDLINE | ID: mdl-1653756

ABSTRACT

We characterized the 5' end and parts of the structural genes of European isolates of hepatitis C virus (HCV) and compared them with recently published RNA sequences of American and Japanese HCV isolates. The cDNA, obtained by reverse transcription of viral RNA extracted from different sera, was amplified by nested PCR, cloned and sequenced. Within 239 nucleotides (nt) of the 5' end, we found only three single-nt exchanges compared to two sequences of Japanese origin and one exchange to the prototype HCV sequence (ptHCV) (homology greater than 99%). The sequence of the core region (534 nt) in two European isolates showed a homology of about 97-98% on the nt level, as compared to ptHCV and one Japanese isolate, and 90% to other Japanese isolates. The amino acid (aa) homology was between 98-99% among all published sequences. A greater discrepancy was found in the European isolates within the 434 nt sequenced from the N-terminus of the putative envelope region, where the nt homology to ptHCV and one Japanese isolate was 90-93% (aa homology 93-95%), and to other Japanese isolates was 72-73% (aa homology 77-78%), indicating that the European isolates may be more closely related to the ptHCV and one Japanese isolate than to the other Japanese isolates. Amplified genes encoding structural proteins (core, envelope) were expressed in Escherichia coli. Sera from chronically infected patients reacted strongly with the recombinant core protein, but no specific immunoreactivity occurred with the putative envelope protein.


Subject(s)
Genes, Viral , Hepacivirus/genetics , Sequence Homology, Nucleic Acid , Viral Core Proteins/genetics , Viral Envelope Proteins/genetics , Viral Structural Proteins/genetics , Amino Acid Sequence , Base Sequence , Carrier State/microbiology , DNA/genetics , Escherichia coli/metabolism , Europe , Hepatitis C/microbiology , Immunoblotting , Japan , Molecular Sequence Data , Polymerase Chain Reaction , RNA, Viral/genetics , Recombinant Proteins/biosynthesis , Recombinant Proteins/immunology , United States
12.
J Chromatogr ; 521(2): 267-77, 1990 Nov 23.
Article in English | MEDLINE | ID: mdl-2286639

ABSTRACT

The transmembrane protein gp41, a component of the viral envelope of HIV I, and its analogue gp36 of HIV II are important antigens for the sensitive and specific detection of anti-HIV antibodies. The immunodominant region of the protein gp41, which reacts with 100% of sera of infected persons, was produced by gene technological means in Escherichia coli. The protein accumulates in the form of insoluble inclusion bodies in the bacterial cell. Purification strategies for this aggregated material depend mainly on the isolation of these "inclusion bodies" and subsequent washing procedures. Growth conditions of the recombinant E. coli cells and the method of the cell disruption are important for the efficiency of purification and the recovery of the antigen. Owing to the insolubility of the expressed antigen, a significant concentration of recombinant gp41 was possible by extracting the soluble cell components. For this purpose, mild detergent solutions and low-molarity chaotropic buffer solutions were used. After final solubilization in 8 M urea buffer at pH 12.5, further chromatographic purification steps followed. The reduction of disulphide bridges with beta-mercaptoethanol or dithiothreitol was important. Gel filtration on a Sephacryl S-200 or Superose 12 column and/or ion-exchange chromatography on a DEAE-Sepharose Fast Flow or Mono Q HR (5/5) column finally resulted in the desired purity of the antigen.


Subject(s)
HIV Envelope Protein gp41/isolation & purification , Recombinant Proteins/isolation & purification , Blotting, Western , Chromatography, Gel , Chromatography, High Pressure Liquid , Electrophoresis, Polyacrylamide Gel , Escherichia coli/analysis , Escherichia coli/metabolism , Genetic Vectors , HIV Envelope Protein gp41/biosynthesis , HIV Envelope Protein gp41/genetics , Hydrogen-Ion Concentration , Plasmids , Recombinant Proteins/biosynthesis
13.
Gene ; 81(1): 109-17, 1989 Sep 01.
Article in English | MEDLINE | ID: mdl-2553536

ABSTRACT

The coding sequence for the hepatitis B virus surface antigen (HBsAg) was used as a new reporter gene for studies on eukaryotic promoter activity and upstream regulatory sequences. The data observed in transfection assays were comparable to results obtained with conventional chloramphenicol acetyltransferase (CAT) assays, as was demonstrated using various transcriptional regulation sequences. The expression of HBsAg as a reporter protein offered some advantages: (i) In transient expression assays, a time course of promoter activity depending on variable culture conditions could be monitored over a period of time, since the HBsAg was secreted into the culture supernatant. (ii) Evaluation of HBsAg from supernatant aliquots and quantification of the corresponding promoter activities could be performed easily, using the very sensitive and readily available diagnostic HBsAg kits. (iii) In contrast to the conventional CAT assay, the cells remained available for further tests, e.g., Western blot, immunofluorescence or transcript analysis. Characteristics of several Epstein-Barr virus (EBV) promoters, depending on the virus state of EBV-positive B-cells (latency, chemical induction, lytic superinfection, trans-activation), were assayed using the HBsAg reporter system.


Subject(s)
Hepatitis B Surface Antigens/genetics , Hepatitis B virus/genetics , Promoter Regions, Genetic , Regulatory Sequences, Nucleic Acid , Animals , Cell Line , Cloning, Molecular , Codon , Genes, Viral , Hepatitis B Surface Antigens/immunology , Hepatitis B virus/immunology , Herpesvirus 4, Human/genetics , Kinetics , Lysogeny , Plasmids , Transfection
14.
J Med Virol ; 27(4): 304-8, 1989 Apr.
Article in English | MEDLINE | ID: mdl-2656910

ABSTRACT

A new assay was developed for the detection of hepatitis B virus (HBV) in human serum using amplification of a short viral DNA sequence by means of the polymerase chain reaction. As little as 0.4 fg viral DNA, corresponding to about 130 genome equivalents, per ml serum could be detected after the amplification procedure. This assay detected viral DNA in a number of patients with proven or suspected chronic HBV infection who were all negative for HBV DNA in the conventional hybridisation assay. We found HBV DNA in all of six HBeAg-positive and in three of eight HBeAg-negative HBsAg carriers, as well as in all of 11 patients with chronic liver disease with antibodies against the HBV core antigen (anti-HBc) as the sole marker for HBV infection, and in three of five apparently healthy individuals showing only anti HBc. Thus, this method is an important improvement for the diagnosis of persistent HBV infections, especially in patients where a definitive serological diagnosis is not possible.


Subject(s)
DNA, Viral/biosynthesis , DNA-Directed DNA Polymerase/metabolism , Gene Amplification , Hepatitis B virus/isolation & purification , Antibodies, Viral/immunology , Blotting, Southern , DNA Probes , DNA, Viral/analysis , Electrophoresis, Agar Gel , Hepatitis Antibodies/analysis , Hepatitis B/diagnosis , Hepatitis B Antigens/immunology , Humans , Immune Sera/analysis , Methods , Plasmids , Sensitivity and Specificity , Serologic Tests , Taq Polymerase
15.
Comput Appl Biosci ; 4(1): 187-91, 1988 Mar.
Article in English | MEDLINE | ID: mdl-3382992

ABSTRACT

During the last years abundant sequence data has become available due to the rapid progress in protein and DNA sequencing techniques. The exact three-dimensional structures, however, are available only for a fraction of proteins with known sequences. For many purposes the primary amino acid sequence of a protein can be directly used to predict important structural parameters. However, mathematical presentation of the calculated values often makes interpretation difficult, especially if many proteins must be analysed and compared. Here we introduce a broad-based, user-defined analysis of amino acid sequence information. The program package is based on published algorithms and is designed to access standard protein data bases, calculate hydropathy, surface probability and flexibility values and perform secondary structure predictions. The data output is in an 'easy-to-read' graphic format and several parameters can be superimposed within a single plot in order to simplify data interpretations. Additionally, this package includes a novel algorithm for the prediction of potential antigenic sites. Thus the software package presented here offers a powerful means of analysing an amino acid sequence for the purpose of structure/function studies as well as antigenic site analyses. These algorithms were written to function in context with the UWGCG (University of Wisconsin Genetics Computer Group) program collection, and are now distributed within that package.


Subject(s)
Amino Acid Sequence , Protein Conformation , Software , Algorithms
17.
Gene ; 58(1): 149-54, 1987.
Article in English | MEDLINE | ID: mdl-2826297

ABSTRACT

The expression of the two Epstein-Barr virus (EBV) major membrane proteins gp250/350 (MA-BLLF1) on the surface of recombinant CHO clones cannot be amplified by methotrexate (MTX) selection, perhaps due to toxic effects of these membrane proteins. After removal of sequences encoding the part of the glycoproteins responsible for membrane anchorage, the gp250/350 is secreted into the medium. Following selection with MTX, this construct allows the amplification of the expression products. Besides the possible use of these proteins in protection experiments, they can also be used as antigens for diagnosis, which opens an efficient approach for control of EBV-related neoplasias by early therapy.


Subject(s)
Herpesvirus 4, Human/genetics , Viral Matrix Proteins/genetics , Animals , Antigens, Viral/genetics , Antigens, Viral/isolation & purification , Clone Cells/metabolism , Cloning, Molecular , Cricetinae , Cricetulus , Female , Gene Amplification , Herpesvirus 4, Human/immunology , Ovary , Plasmids , Viral Matrix Proteins/immunology , Viral Matrix Proteins/metabolism , Viral Vaccines/isolation & purification
18.
J Virol ; 60(3): 902-9, 1986 Dec.
Article in English | MEDLINE | ID: mdl-3023679

ABSTRACT

The expression of the 1,800-base-pair BamHI Z region of Epstein-Barr virus DNA was analyzed by hybrid-selected translation with several DNA subclones and RNA from different cell lines. Furthermore, large segments of the three reading frames extending in this area were expressed as fusion proteins into Escherichia coli. The fusion proteins were partially purified and used to immunize rabbits. These sera were used to confirm our mapping assignments and to identify the respective posttranslationally modified proteins in in vivo labeling experiments. The reading frame BRLF1 (the first reading frame starting in the BamHI R fragment in leftward orientation) encoded a 93- to 96-kilodalton (kDa) protein depending on the cell line. The molecular weight of in vivo-labeled proteins was increased relative to that of in vitro-translated proteins, indicating that a posttranslational modification had occurred. The BZLF1 reading frame encoded a 35-kDa protein. It was posttranslationally cleaved from a 38-kDa precursor in induced B95-8 and induced Raji cells and from a 40-kDa precursor in induced P3HR1 cells. In Raji cells superinfected with virus derived from P3HR1 cells, the protein seemed to be expressed both from endogenous Raji genomes and from infecting genomes. The transcripts for the 93- to 96-kDa and the 35-kDa protein overlapped partially. The serum against the expressed third reading frame BZLF2 specifically precipitated a 140-kDa protein. This reading frame contains only 650 nucleotides, and therefore further coding sequences were presumably spliced to BZLF2. The latter is deleted in the Raji cell line; therefore, the observed 140kDa protein in superinfected Raji cells was expressed from infecting P3HR1 genomes.


Subject(s)
Herpesvirus 4, Human/genetics , Viral Proteins/genetics , Chromosome Mapping , DNA Restriction Enzymes , Deoxyribonuclease BamHI , Gene Expression Regulation , Genes , Genes, Viral , Immunologic Techniques , Nucleic Acid Hybridization , Protein Biosynthesis , RNA, Messenger/genetics , RNA, Viral/genetics , Transcription, Genetic , Viral Fusion Proteins/genetics , Viral Proteins/immunology
19.
Gene ; 42(3): 303-12, 1986.
Article in English | MEDLINE | ID: mdl-2426158

ABSTRACT

We have attempted to produce the 138-kDa early protein (ep 138) of Epstein-Barr virus (EBV) in Escherichia coli. This protein was found, by immunoprecipitation, to be a clinically relevant antigen, especially for the determination of the IgA-titer in patients with nasopharyngeal carcinoma (NPC). Since the expression of the entire ep 138 coding region was unsuccessful, we synthesized only the antigenic parts of this protein. Potential antigenic sites were predicted from the amino acid sequence by combining values for hydrophilicity with calculated estimates of the secondary structure. The two predicted fragments were found to be antigenic, but only one of them was stably expressed in E. coli as a non-fusion protein. This stable protein fragment was, in turn, able to stabilize the second antigenic fragment forming an autologous fusion protein, consisting exclusively of EBV-derived sequences. The resulting product reacts particularly well with IgA antibodies of NPC patients indicating its diagnostic value for NPC.


Subject(s)
Antigens, Viral/genetics , DNA-Binding Proteins/genetics , Herpesvirus 4, Human/immunology , Recombinant Proteins/genetics , Viral Proteins/genetics , Cloning, Molecular , Epitopes , Gene Expression Regulation , Genes , Genes, Viral , Genetic Engineering/methods , Protein Conformation , Solubility
20.
Gene ; 44(2-3): 353-9, 1986.
Article in English | MEDLINE | ID: mdl-3023198

ABSTRACT

The gene of the major membrane antigen (gp250/350) of the Epstein-Barr virus (EBV) was isolated and inserted under the control of the SV40 early promoter into a eukaryotic expression vector, which allows selection for dhfr+ phenotype. Following transfection with this vector, Chinese hamster ovary cells express on their surfaces proteins immunologically similar to the major EBV membrane antigen. The transcript encoding gp250/350 is processed by partial splicing similarly but more efficiency than in B95-8 cells from which the DNA originates.


Subject(s)
Cell Transformation, Viral , Genes, Viral , Genes , Herpesvirus 4, Human/genetics , Viral Proteins/genetics , Animals , Base Sequence , Cell Line , Cricetinae , Cricetulus , DNA Restriction Enzymes , Female , Genetic Vectors , Ovary , Promoter Regions, Genetic , Transcription, Genetic , Viral Matrix Proteins
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