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1.
In Silico Biol ; 14(1-2): 101-121, 2020.
Article in English | MEDLINE | ID: mdl-32597796

ABSTRACT

A dynamical model of the pathophysiological behaviors of IL18 and IL10 cytokines with their receptors is tested against data for the case of early sepsis. The proposed approach considers the surroundings (organs and bone marrow) and the different subsystems (cells and cyctokines). The interactions between blood cells, cytokines and the surroundings are described via mass balances. Cytokines are adsorbed onto associated receptors at the cell surface. The adsorption is described by the Langmuir model and gives rise to the production of more cytokines and associated receptors inside the cell. The quantities of pro and anti-inflammatory cytokines present in the body are combined to give global information via an inflammation level function which describes the patient's state. Data for parameter estimation comes from the Sepsis 48 H database. Comparisons between patient data and simulations are presented and are in good agreement. For the IL18/IL10 cytokine pair, 5 key parameters have been found. They are linked to pro-inflammatory IL18 cytokine and show that the early sepsis is driven by components of inflammatory character.


Subject(s)
Adjuvants, Immunologic/therapeutic use , Cytokines/immunology , Sepsis/drug therapy , Adjuvants, Immunologic/pharmacology , Anti-Inflammatory Agents/therapeutic use , Cytokines/metabolism , Cytokines/therapeutic use , Female , Humans , Inflammation , Interleukin-10/metabolism , Interleukin-18/metabolism , Male , Models, Immunological , Sepsis/immunology , Sepsis/metabolism , Shock, Septic/drug therapy , Shock, Septic/immunology , Shock, Septic/metabolism , Treatment Outcome
2.
Clin Microbiol Infect ; 22(9): 812.e1-812.e7, 2016 Sep.
Article in English | MEDLINE | ID: mdl-27404367

ABSTRACT

Ventilator-associated pneumonia (VAP) is the most common infection in critically ill patients. Initial antibiotic therapy is often broad spectrum, which promotes antibiotic resistance so new techniques are under investigation to obtain early microbiological identification and quantification. This trial compares the performance of a new real-time quantitative molecular-based method with conventional culture in patients with suspected VAP. Patients with suspected VAP who were ventilated for at least 48 h were eligible. An endotracheal aspirate (ETA) and a bronchoalveolar lavage (BAL) were performed at each suspected VAP episode. Both samples were analysed by conventional culture and molecular analysis. For the latter, bacterial DNA was extracted from each sample and real-time PCR were run. In all, 120 patients were finally included; 76% (91) were men; median age was 65 years, and clinical pulmonary infection score was ≥6 for 73.5% (86) of patients. A total of 120 BAL and 103 ETA could be processed and culture results above the agreed threshold were obtained for 75.0% (90/120) of BAL and 60.2% (62/103) of ETA. The main isolated bacteria were Staphylococcus aureus, Pseudomonas aeruginosa and Haemophilus influenzae. Performance was 89.2% (83.2%-93.6%) sensitivity and 97.1% (96.1%-97.9%) specificity for BAL samples and 71.8% (61.0%-81.0%) sensitivity and 96.6% (95.4%-97.5%) specificity for ETA samples when the molecular biology method was compared with conventional culture method (chosen as reference standard). This new molecular method can provide reliable quantitative microbiological data and is highly specific with good sensitivity for common pathogens involved in VAP.


Subject(s)
Bacteria/genetics , Molecular Diagnostic Techniques , Pneumonia, Bacterial/diagnosis , Pneumonia, Bacterial/microbiology , Pneumonia, Ventilator-Associated/diagnosis , Pneumonia, Ventilator-Associated/microbiology , Aged , Aged, 80 and over , Bronchoalveolar Lavage Fluid/microbiology , Female , Humans , Male , Middle Aged , ROC Curve , Reproducibility of Results , Sensitivity and Specificity
3.
Eur J Cell Biol ; 80(2): 156-63, 2001 Feb.
Article in English | MEDLINE | ID: mdl-11302520

ABSTRACT

Expression of the Cdx1 homeobox gene in epithelial intestinal cells promotes cellular growth and differentiation. Cdx1and the Pancreatitis Associated Protein I (PAP I) are concomitantly expressed in the epithelial cells of the lower part of the intestinal crypts. Because Cdx1 is a transcription factor and PAP I, in other tissues, is a proliferative factor, we looked for a relationship between these two proteins in the intestinal-derived IEC-6 cells. After stable transfection with a Cdx1 expression vector, they produce high levels of the PAP I transcript and protein indicating a functional link between the two genes. Demonstration of Cdx1 binding to the PAP I promoter region and suppression of PAP I induction after deletion of the corresponding sequence indicated that Cdx1 is a transcription factor controlling PAP I gene expression in intestinal cells. By infecting IEC-6 cells with adenoviruses expressing PAP I, we demonstrated that PAP I induces mitosis in these cells. On the other hand, inhibition of the PAP I expression in the IEC-6 Cdxl-expressing cells using an antisense strategy confirmed the requirement of this protein for the effect of Cdx1 on cell growth. Finally, addition of the immunopurified PAP I to the culture medium promotes cell growth of the IEC-6 cells in a dose-dependent manner. Maximal effect was obtained at 1 ng/ml. Taken together these results demonstrate that PAP I is a target of the Cdx1 homeobox gene in intestinal cells which participates in the regulation of intestinal cell growth via an autocrine and/or paracrine mechanism.


Subject(s)
Acute-Phase Proteins/metabolism , Antigens, Neoplasm , Biomarkers, Tumor , Homeodomain Proteins/metabolism , Intestinal Mucosa/cytology , Lectins, C-Type , Transcription Factors/metabolism , Acute-Phase Proteins/genetics , Animals , Cell Division , Cell Line , Epithelial Cells/cytology , Gene Expression Regulation , Homeodomain Proteins/genetics , Humans , Mitosis , Pancreatitis-Associated Proteins , Promoter Regions, Genetic , Rats , Response Elements , Transcription Factors/genetics , Transcriptional Activation
4.
Mol Cell Biol Res Commun ; 3(5): 271-6, 2000 May.
Article in English | MEDLINE | ID: mdl-10964750

ABSTRACT

We have previously reported that down-regulation of Cdx1 and Cdx2 mRNA expression is associated with colon carcinogenesis, and that coordinated reexpression of these genes in the HT29 colon cancer-derived cell line leads to a reduced malignant phenotype. Here we show that restoring Cdx1 and Cdx2 expression in HT29 cells enhanced the antigen presentation system, as reflected by a strong induction of the concentration of HLA-I molecules at the cell surface, resulting from increased expression of the HLA-I mRNA. Expression of the LMP2 proteasomal protein was also strongly induced by Cdx1 and Cdx2 at the transcriptional level, whereas TAP1 expression which is under the control of the same bidirectional promoter as LMP2 remained unchanged. Furthermore, expression of the adhesion molecule ICAM-1, which works in concert with HLA-I, and of the cell death promoter Fas was also increased upon Cdx1 and Cdx2 expression. Taken together, these results suggest that loss of Cdx1 and Cdx2 expression during colorectal carcinogenesis could favor the escape of tumor cells from the immune system. In conclusion, restoration of Cdx1 and Cdx2 expression should be considered in immunotherapeutic strategies for colorectal cancer.


Subject(s)
Avian Proteins , Colonic Neoplasms/genetics , Cysteine Endopeptidases , Genes, Homeobox/genetics , Histocompatibility Antigens Class I/metabolism , Homeodomain Proteins/genetics , ATP Binding Cassette Transporter, Subfamily B, Member 2 , ATP-Binding Cassette Transporters/genetics , ATP-Binding Cassette Transporters/metabolism , Antineoplastic Agents/pharmacology , CD58 Antigens/genetics , CD58 Antigens/metabolism , CDX2 Transcription Factor , Fas Ligand Protein , Gene Expression Regulation, Neoplastic/drug effects , Genes, MHC Class I , HT29 Cells , Homeodomain Proteins/metabolism , Humans , Immunity, Cellular , Intercellular Adhesion Molecule-1/genetics , Intercellular Adhesion Molecule-1/metabolism , Interferon-gamma/pharmacology , Membrane Glycoproteins/genetics , Membrane Glycoproteins/metabolism , Proteins/genetics , Proteins/metabolism , Trans-Activators
5.
Gastroenterology ; 117(6): 1326-38, 1999 Dec.
Article in English | MEDLINE | ID: mdl-10579974

ABSTRACT

BACKGROUND & AIMS: Homeobox genes are involved in establishing and maintaining differentiated patterns in adult tissues. Cdx1 might carry out that function in the intestinal epithelium because its expression is specific to that tissue and increases during development. METHODS: Cdx1 expression was induced in IEC-6 intestinal epithelial cells by stable transfection, and subsequent changes in cell growth, resistance to apoptosis, migration, and differentiation were monitored. RESULTS: Compared with control, IEC-6/Cdx1 cells proliferated more rapidly, were more resistant to apoptosis, and migrated 3-4 times faster, as shown by an in vitro wound assay. IEC-6/Cdx1 cells in culture formed multilayers. Morphology of the top layer was similar to that of columnar epithelium, with cells showing typical features of differentiated enterocytes, including complex junctions and well-developed microvilli with glycocalix. Expression of 2 markers of enterocyte differentiation, aminopeptidase N and villin, was induced in IEC-6/Cdx1 cells. Aminopeptidase N was targeted to the basolateral membrane, and villin was localized to the cytoplasm. Actin filaments, which were mostly present in transcytoplasmic stress fibers in control cells, were redistributed to the cortex in Cdx1-transfected cells. CONCLUSIONS: Cdx1 expression in IEC-6 cells induces phenotypic changes characteristic of differentiating enterocytes, suggesting an important role for Cdx1 in the transition from stem cells to proliferating/transit cells.


Subject(s)
Avian Proteins , Homeodomain Proteins/physiology , Intestinal Mucosa/cytology , Actins/metabolism , Animals , Apoptosis/physiology , CD13 Antigens/metabolism , Carrier Proteins/metabolism , Cell Differentiation/physiology , Cell Division/physiology , Cell Line , Cell Movement/physiology , Epithelial Cells/cytology , Epithelial Cells/metabolism , Epithelial Cells/ultrastructure , Homeodomain Proteins/biosynthesis , Homeodomain Proteins/genetics , Microfilament Proteins/metabolism , Phenotype , Rats , Stem Cells/cytology , Transfection , Transforming Growth Factor beta/pharmacology
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