1.
J Comput Biol
; 13(6): 1214-31, 2006.
Article
in English
| MEDLINE
| ID: mdl-16901238
ABSTRACT
Biological weighted sequences are used extensively in molecular biology as profiles for protein families, in the representation of binding sites and often for the representation of sequences produced by a shotgun sequencing strategy. In this paper, we address three fundamental problems in the area of biologically weighted sequences: (i) computation of repetitions, (ii) pattern matching, and (iii) computation of regularities. Our algorithms can be used as basic building blocks for more sophisticated algorithms applied on weighted sequences.
Subject(s)
Algorithms , Sequence Alignment , Animals , Base Sequence , Binding Sites , Computational Biology , Hemoglobins/chemistry , Hemoglobins/genetics , Humans , Molecular Sequence Data
2.
Mol Microbiol
; 27(1): 236-7, 1998 Jan.
Article
in English
| MEDLINE
| ID: mdl-9466271