Active bath-induced localization and collapse of passive semiflexible polymers.

The conformational and dynamical properties of a passive polymer embedded in a bath of active Brownian particles (ABPs) are studied by Langevin dynamics simulations. Various activities and ABP concentrations below and above the critical values for motility-induced phase separation (MIPS) are considered. In a homogeneous ABP fluid, the embedded polymer swells with increasing bath activity, with stronger swelling for larger densities. The polymer dynamics is enhanced, with the diffusion coefficient increasing by a power-law with increasing activity, where the exponent depends on the ABP concentration. For ABP concentrations in the MIPS regime, we observe a localization of the polymer in the low-density ABP phase associated with polymer collapse for moderate activities and a reswelling for high activities accompanied by a preferred localization in the high-density ABP phase. Localization and reswelling are independent of the polymer stiffness, with stiff polymers behaving similarly to flexible polymers. The polymer collapse is associated with a slowdown of its dynamics and a significantly smaller center-of-mass diffusion coefficient. In general, the polymer dynamics can only partially be described by an effective (bath) temperature. Moreover, the properties of a polymer embedded in a homogeneous active bath deviate quantitatively from those of a polymer composed of active monomers, i.e., linear chains of ABPs; however, such a polymer exhibits qualitatively similar activity-dependent features.

Wall entrapment of peritrichous bacteria: a mesoscale hydrodynamics simulation study.

Microswimmers such as E. coli bacteria accumulate and exhibit an intriguing dynamics near walls, governed by hydrodynamic and steric interactions. Insight into the underlying mechanisms and predominant interactions demand a detailed characterization of the entrapment process. We employ a mesoscale hydrodynamics simulation approach to study entrapment of an E. coli-type cell at a no-slip wall. The cell is modeled by a spherocylindrical body with several explicit helical flagella. Three stages of the entrapment process can be distinguished: the approaching regime, where a cell swims toward a wall on a nearly straight trajectory; a scattering regime, where the cell touches the wall and reorients; and a surface-swimming regime. Our simulations show that steric interactions may dominate the entrapment process, yet, hydrodynamic interactions slow down the adsorption dynamics close to the boundary and imply a circular motion on the wall. The locomotion of the cell is characterized by a strong wobbling dynamics, with cells preferentially pointing toward the wall during surface swimming.

Active Brownian ring polymers.

The conformational and dynamical properties of semiflexible active Brownian ring polymers are investigated analytically. A ring is described by the Gaussian semiflexible polymer model accounting for the finite contour length. Activity is implemented by a Gaussian, non-Markovian stochastic process resembling either an external nonthermal force or a local self-propulsion velocity as for an active Ornstein-Uhlenbeck particle. Specifically, the fluctuation spectrum of normal-mode amplitudes is analyzed. At elevated activities, flexible (tension) modes dominate over bending modes even for semiflexible rings, corresponding to enhanced conformational fluctuations. The fluctuation spectrum exhibits a crossover from a quadratic to a quartic dependence on the mode number with increasing mode number, originating from intramolecular tension, but the relaxation behavior is either dominated by intra-polymer processes or the active stochastic process. A further increase in activity enhances fluctuations at large length scales at the expense of reduced fluctuations at small scales. Conformationally, the mean square ring diameter exhibits swelling qualitatively comparable to liner polymers. The ring's diffusive dynamics is enhanced, and the mean square displacement shows distinct activity-determined regimes, consecutively, a ballistic, a subdiffusive, and a diffusive regime. The subdiffusive regime disappears gradually with increasing activity.