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1.
Nucleic Acids Res ; 29(14): 2950-62, 2001 Jul 15.
Article in English | MEDLINE | ID: mdl-11452020

ABSTRACT

In kinetoplastid protozoa, mitochondrial (mt) mRNAs are post-transcriptionally edited by insertion and deletion of uridylate residues, the information being provided by guide (g)RNAs. Currently popular mechanisms for the editing process envisage a series of consecutive 'cut-and-paste' reactions, carried out by a complex RNP machinery. Here we report on the purification, cloning and functional analysis of two gRNA-binding proteins of 28.8 (gBP29) and 26.8 kDa (gBP27) from mitochondria of the insect trypanosome Crithidia fasciculata. gBP29 and gBP27 proved to be similar, Arg + Ala-rich proteins, with pI values of approximately 10.0. gBP27 has no homology to known proteins, but gBP29 is the C.fasciculata orthologue of gBP21 from Trypanosoma brucei, a gRNA-binding protein that associates with active RNA editing complexes. As measured in UV cross-linking assays, His-tagged recombinant gBP29 and gBP27 bind to radiolabelled poly(U) and synthetic gRNAs, while competition experiments suggest a role for the gRNA 3'-(U)-tail in binding to these proteins. Immunoprecipitates of mt extracts generated with antibodies against gBP29 also contained gBP27 and vice versa. The immunoprecipitates further harbored a large proportion of the cellular content of four different gRNAs and of edited and pre-edited NADH dehydrogenase subunit 7 mRNAs, but only small amounts of mt rRNAs. In addition, the bulk of gBP29 and gBP27 co-eluted with gRNAs from gel filtration columns in the high molecular weight range. Together, these results suggest that the proteins are part of a large macromolecular complex(es). We infer that gBP29 and gBP27 are components of the C.fasciculata editing machinery that may interact with gRNAs.


Subject(s)
Crithidia fasciculata/genetics , Protozoan Proteins , RNA-Binding Proteins/genetics , RNA/genetics , Amino Acid Sequence , Animals , Cloning, Molecular , DNA, Complementary/chemistry , DNA, Complementary/genetics , Molecular Sequence Data , Precipitin Tests , Protein Binding , RNA, Guide, Kinetoplastida/metabolism , RNA, Messenger/metabolism , RNA, Mitochondrial , RNA, Protozoan/metabolism , RNA-Binding Proteins/isolation & purification , RNA-Binding Proteins/metabolism , Recombinant Proteins/isolation & purification , Recombinant Proteins/metabolism , Sequence Alignment , Sequence Analysis, DNA , Sequence Homology, Amino Acid , Trypanosoma brucei brucei/genetics
2.
J Am Soc Mass Spectrom ; 12(2): 222-7, 2001 Feb.
Article in English | MEDLINE | ID: mdl-11212007

ABSTRACT

Mass spectrometric structural analysis of crosslinked peptides is a powerful method to elucidate the spatial arrangement of polypeptides in protein complexes. Our aim is to develop bifunctional crosslinkers that, after crosslinking protein complexes followed by proteolytic digestion, give rise to crosslinked peptides that can be readily tracked down by mass spectrometry. To this end we synthesized the crosslinker N-benzyliminodiacetoyloxysuccinimid (BID), which yields stable benzyl cation marker ions upon low-energy collision-induced dissociation (CID) tandem mass spectrometry. Sensitive detection of the marker ion upon low-energy CID is demonstrated with different BID-crosslinked peptide preparations. With BID it becomes possible to retrieve crosslinked and crosslinker-adducted peptides, without the necessity of purifying crosslinked peptides prior to identification. The basic design of this crosslinker can be varied upon, in order to meet specific crosslinking needs.


Subject(s)
Cross-Linking Reagents , Proteins/chemistry , Bradykinin/analogs & derivatives , Bradykinin/chemistry , Imino Acids , Magnetic Resonance Spectroscopy , Neurotensin/chemistry , Spectrometry, Mass, Electrospray Ionization
3.
EMBO J ; 19(11): 2444-51, 2000 Jun 01.
Article in English | MEDLINE | ID: mdl-10835343

ABSTRACT

Prohibitins are ubiquitous, abundant and evolutionarily strongly conserved proteins that play a role in important cellular processes. Using blue native electrophoresis we have demonstrated that human prohibitin and Bap37 together form a large complex in the mitochondrial inner membrane. This complex is similar in size to the yeast complex formed by the homologues Phb1p and Phb2p. In yeast, levels of this complex are increased on co-overexpression of both Phb1p and Phb2p, suggesting that these two proteins are the only components of the complex. Pulse-chase experiments with mitochondria isolated from phb1/phb2-null and PHB1/2 overexpressing cells show that the Phb1/2 complex is able to stabilize newly synthesized mitochondrial translation products. This stabilization probably occurs through a direct interaction because association of mitochondrial translation products with the Phb1/2 complex could be demonstrated. The fact that Phb1/2 is a large multimeric complex, which provides protection of native peptides against proteolysis, suggests a functional homology with protein chaperones with respect to their ability to hold and prevent misfolding of newly synthesized proteins.


Subject(s)
Intracellular Membranes/metabolism , Membrane Proteins/metabolism , Mitochondria/metabolism , Molecular Chaperones/physiology , Proteins/physiology , Repressor Proteins , Amino Acid Sequence , Fungal Proteins/physiology , Humans , Macromolecular Substances , Molecular Sequence Data , Prohibitins , Protein Folding , Proteins/metabolism , Recombinant Fusion Proteins/metabolism , Saccharomyces cerevisiae/metabolism , Saccharomyces cerevisiae Proteins , Sequence Alignment , Sequence Homology, Amino Acid
4.
J Biol Chem ; 273(36): 23381-7, 1998 Sep 04.
Article in English | MEDLINE | ID: mdl-9722573

ABSTRACT

Here we describe the isolation, purification, and basic kinetic parameters of a vanadium type chloroperoxidase from the hyphomycete fungus Embellisia didymospora. The enzyme proved to possess similar high substrate affinities, a Km of 5 microM for a bromide, 1.2 mM for a chloride, and 60 microM for a hydrogen peroxide, as those of the vanadium chloroperoxidase from Curvularia inaequalis, although with lower turnover rates for both Cl- and Br-. Substrate bromide was also found to inhibit the enzyme, a feature subsequently also noted for the chloroperoxidase from C. inaequalis. The gene encoding this enzyme was identified using DNA Southern blotting techniques and subsequently isolated and sequenced. A comparison is made between this vanadium chloroperoxidase and that of the fungus C. inaequalis both kinetically and at the sequence level. At the primary structural level the two chloroperoxidases share 68% identity, with conservation of all active site residues.


Subject(s)
Chloride Peroxidase/metabolism , Mitosporic Fungi/enzymology , Vanadium , Amino Acid Sequence , Base Sequence , Bromides/metabolism , Chloride Peroxidase/genetics , Chloride Peroxidase/isolation & purification , Chlorides/metabolism , Cyclohexanones/metabolism , Kinetics , Models, Molecular , Molecular Sequence Data , Protein Structure, Secondary , Restriction Mapping , Sequence Analysis , Sequence Homology, Amino Acid , Species Specificity
5.
Eur J Biochem ; 254(2): 389-94, 1998 Jun 01.
Article in English | MEDLINE | ID: mdl-9660196

ABSTRACT

The assembly of cytochrome-c oxidase was studied in human cells cultured in the presence of inhibitors of mitochondrial or cytosolic protein synthesis. Mitochondrial fractions were resolved using two-dimensional PAGE (blue native PAGE and tricine/SDS/PAGE) and subsequent western blots were developed with monoclonal antibodies against specific subunits of cytochrome-c oxidase. Proteins were also visualized using metabolic labeling followed by two-dimensional electrophoresis and fluorography. These techniques allowed identification of two assembly intermediates of cytochrome-c oxidase. Assembly of the 13 subunits of cytochrome-c oxidase starts with the association of subunit I with subunit IV. Then a larger subcomplex is formed, lacking only subunits VIa and either VIIa or VIIb.


Subject(s)
Electron Transport Complex IV/biosynthesis , Electron Transport Complex IV/chemistry , Antibodies, Monoclonal , Cell Line , Cycloheximide/pharmacology , Cytosol/enzymology , Doxycycline/pharmacology , Electron Transport Complex IV/genetics , Electrophoresis, Gel, Two-Dimensional , Enzyme Stability , Humans , Kinetics , Mitochondria/enzymology , Models, Biological , Protein Conformation , Protein Synthesis Inhibitors/pharmacology
6.
Hum Mol Genet ; 7(5): 847-53, 1998 May.
Article in English | MEDLINE | ID: mdl-9536089

ABSTRACT

Rhizomelic chondrodysplasia punctata (RCDP) is a genetic disorder which is clinically characterized by rhizomelic shortening of the upper extremities, typical dysmorphic facial appearance, congenital contractures and severe growth and mental retardation. Patients with RCDP can be subdivided into three subgroups based on biochemical analyses and complementation studies. The largest subgroup contains patients with mutations in the PEX7 gene encoding the PTS2 receptor. This results in multiple peroxisomal abnormalities which includes a deficiency of acyl-CoA:dihydroxyacetonephosphate acyltransferase (DHAPAT), alkyl-dihydroxyacetonephosphate synthase (alkyl-DHAP synthase), peroxisomal 3-ketoacyl-CoA thiolase and phytanoyl-CoA hydroxylase, although there are differences in the extent of the deficiencies observed. Patients in the two other subgroups have been reported to be either deficient in the activity of DHAPAT (RCDP type 2) or alkyl-DHAP synthase (RCDP type 3) while no other abnormalities could be observed. To examine whether the gene encoding DHAPAT is mutated in patients with RCDP type 2, we determined the N-terminal amino acid sequence of the enzyme isolated from human placenta. Using this sequence as a query, we identified a 2040 bp open reading frame (ORF) in the human database of expressed sequence tags. Expression of this ORF in the yeast Saccharomyces cerevisiae showed that we have identified the DHAPAT cDNA. The deduced amino acid sequence revealed no PTS2 consensus sequence. In contrast DHAPAT appears to contain a putative PTS1 at the extreme C-terminus. All RCDP type 2 patients analyzed were found to contain mutations in their DHAPAT cDNA. This demonstrates that RCDP type 2 is the result of mutations in DHAPAT.


Subject(s)
Acyltransferases/genetics , Chondrodysplasia Punctata, Rhizomelic/enzymology , Chondrodysplasia Punctata, Rhizomelic/genetics , Acyltransferases/biosynthesis , Amino Acid Sequence , Animals , Base Sequence , DNA Mutational Analysis , DNA, Complementary/isolation & purification , Female , Humans , Male , Mice , Molecular Sequence Data , Saccharomyces cerevisiae/enzymology , Saccharomyces cerevisiae/genetics
7.
Eur J Biochem ; 251(1-2): 504-9, 1998 Jan 15.
Article in English | MEDLINE | ID: mdl-9492324

ABSTRACT

In various mammals, enzymatically active and inactive members of family 18 glycosyl hydrolases, containing chitinases, have been identified. In man, chitotriosidase is the functional chitinolytic enzyme, whilst the homologous human cartilage 39-kDa glycoprotein (HC gp-39) does not exhibit chitinase activity and its function is unknown. This study establishes that HC gp-39 is a chitin-specific lectin. It is experimentally demonstrated that a single amino acid substitution in the catalytic centre of the 39-kDa isoform of chitotriosidase, which generates a similar sequence to that in HC gp-39, results in a loss of hydrolytic activity and creates the capacity to bind to chitin. The possible implication of the finding for chitinolytic and chitin-binding proteins that are produced in high quantities by activated macrophages are discussed.


Subject(s)
Chitin/metabolism , Glycoproteins/metabolism , Hexosaminidases/metabolism , Macrophages/metabolism , Adipokines , Amino Acid Sequence , Animals , Binding Sites , COS Cells , Cells, Cultured , Chitinase-3-Like Protein 1 , Hexosaminidases/genetics , Humans , Lectins , Macrophages/enzymology , Molecular Sequence Data , Mutagenesis, Site-Directed , Sequence Homology, Amino Acid
8.
Nat Genet ; 17(2): 190-3, 1997 Oct.
Article in English | MEDLINE | ID: mdl-9326940

ABSTRACT

Refsum disease is an autosomal-recessively inherited disorder characterized clinically by a tetrad of abnormalities: retinitis pigmentosa, peripheral neuropathy, cerebellar ataxia and elevated protein levels in the cerebrospinal fluid (CSF) without an increase in the number of cells in the CSF. All patients exhibit accumulation of an unusual branched-chain fatty acid, phytanic acid (3,7,11,15-tetramethylhexadecanoic acid), in blood and tissues. Biochemically, the disease is caused by the deficiency of phytanoyl-CoA hydroxylase (PhyH), a peroxisomal protein catalyzing the first step in the alpha-oxidation of phytanic acid. We have purified PhyH from rat-liver peroxisomes and determined the N-terminal amino-acid sequence, as well as an additional internal amino-acid sequence obtained after Lys-C digestion of the purified protein. A search of the EST database with these partial amino-acid sequences led to the identification of the full-length human cDNA sequence encoding PhyH: the open reading frame encodes a 41.2-kD protein of 338 amino acids, which contains a cleavable peroxisomal targeting signal type 2 (PTS2). Sequence analysis of PHYH fibroblast cDNA from five patients with Refsum disease revealed distinct mutations, including a one-nucleotide deletion, a 111-nucleotide deletion and a point mutation. This analysis confirms our finding that Refsum disease is caused by a deficiency of PhyH.


Subject(s)
Mixed Function Oxygenases/genetics , Mutation , Refsum Disease/enzymology , Refsum Disease/genetics , Adult , Amino Acid Sequence , Animals , Base Sequence , Case-Control Studies , DNA Primers/genetics , DNA, Complementary/genetics , Female , Gene Expression , Humans , Infant , Liver/enzymology , Male , Microbodies/enzymology , Mixed Function Oxygenases/isolation & purification , Molecular Sequence Data , Point Mutation , Polymerase Chain Reaction , Rats , Sequence Deletion
9.
Biol Chem ; 378(8): 837-41, 1997 Aug.
Article in English | MEDLINE | ID: mdl-9377479

ABSTRACT

Mitochondrial mRNAs in trypanosomatids are edited by uridylate insertion and deletion. The respiratory chain complexes cytochrome c reductase, cytochrome c oxidase and F0F1-ATPase of the insect trypanosomatid Crithidia fasciculata have been isolated and analysed by peptide microsequencing, but so far, proteins encoded by edited (and unedited) mitochondrial mRNAs have not been found. In this paper, we provide evidence that the mitochondrial mRNAs encoding the three large subunits of cytochrome c oxidase are indeed translated. First, purified holo cytochrome c oxidase turned out to be cysteine-rich, in agreement with the high cysteine codon-content of the sequence of mitochondrial cox subunit mRNAs. Second, in mass spectrometry measurements of cytochrome c oxidase, a protein was detected with the predicted molecular weight of cytochrome c oxidase subunit 2. Finally, an antibody generated against a fusion protein produced in Escherichia coli from constructs containing a segment of cytochrome c oxidase subunit 2 cDNA, specifically recognised protein bands present in cytochrome c oxidase following SDS PAGE. However, these proteins were present in the high molecular weight region of the gel, suggesting that cytochrome c oxidase subunit 2 aggregates in the presence of SDS.


Subject(s)
Crithidia fasciculata/enzymology , Electron Transport Complex IV/metabolism , Mitochondria/enzymology , Animals , Blotting, Western , Crithidia fasciculata/ultrastructure , Cyclooxygenase 2 , Cysteine/chemistry , Cysteine/metabolism , Electron Transport Complex IV/chemistry , Electron Transport Complex IV/isolation & purification , Isoenzymes/chemistry , Isoenzymes/immunology , Peroxidases/chemistry , Peroxidases/immunology , Prostaglandin-Endoperoxide Synthases/chemistry , Prostaglandin-Endoperoxide Synthases/immunology , RNA, Protozoan/biosynthesis , Spectrometry, Mass, Matrix-Assisted Laser Desorption-Ionization
10.
Mol Biochem Parasitol ; 85(2): 171-86, 1997 Apr.
Article in English | MEDLINE | ID: mdl-9106191

ABSTRACT

Mitochondrial mRNAs encoding subunits of respiratory-chain complexes in kinetoplastids are post-transcriptionally edited by uridine insertion and deletion. In order to identify the proteins encoded by these mRNAs, we have analyzed respiratory-chain complexes from cultured cells of Crithidia fasciculata with the aid of 2D polyacrylamide gel electrophoresis (PAGE). The subunit composition of F0F1-ATPase (complex V), identified on the basis of its activity as an oligomycin-sensitive ATPase, is similar to that of bovine mitochondrial F0F1-ATPase. Amino acid sequence analysis, combined with binding studies using dicyclohexyldiimide and azido ATP allowed the identification of two F0 subunits (b and c) and all of the F1 subunits. The F0 b subunit has a low degree of similarity to subunit b from other organisms. The F1 alpha subunit is extremely small making the beta subunit the largest F1 subunit. Other respiratory-chain complexes were also analyzed. Interestingly, an NADH: ubiquinone oxidoreductase (complex I) appeared to be absent, as judged by electron paramagnetic resonance (EPR), enzyme activity and 2D PAGE analysis. Cytochrome c oxidase (complex IV) displayed a subunit pattern identical to that reported for the purified enzyme, whereas cytochrome c reductase (complex III) appeared to contain two extra subunits. A putative complex II was also identified. The amino acid sequences of the subunits of these complexes also show a very low degree of similarity (if any) to the corresponding sequences in other organisms. Remarkably, peptide sequences derived from mitochondrially encoded subunits were not found in spite of the fact that sequences were obtained of virtually all subunits of complex III, IV and V.


Subject(s)
Crithidia fasciculata/chemistry , Crithidia fasciculata/genetics , Adenosine Triphosphate/analogs & derivatives , Adenosine Triphosphate/chemistry , Adenosine Triphosphate/metabolism , Amino Acid Sequence , Animals , Crithidia fasciculata/enzymology , Dicyclohexylcarbodiimide/chemistry , Dicyclohexylcarbodiimide/metabolism , Electron Transport/genetics , Electrophoresis, Gel, Two-Dimensional , Molecular Sequence Data , Proton-Translocating ATPases/chemistry , Proton-Translocating ATPases/metabolism , Sequence Analysis
11.
Eur J Biochem ; 244(2): 279-85, 1997 Mar 01.
Article in English | MEDLINE | ID: mdl-9118991

ABSTRACT

Chitotriosidase, the human analogue of chitinases from non-vertebrate species, has recently been identified. The macrophage-derived enzyme is remarkably heterogeneous in molecular mass and isoelectric point. The synthesis and modification of the enzyme in cultured macrophages is reported. Chitotriosidase is synthesized as a 50-kDa protein with a pI of about 6.5 and 7.2. It is predominantly secreted, but in part processed into a 39-kDa form with a pI of 8.0 that accumulates in lysosomes. In the C-terminal extension of the 50-kDa chitotriosidase, sialic-acid containing O-linked glycans are present, causing its heterogeneous acidic isoelectric point. Chitotriosidase lacks N-linked glycans and the mechanism of routing to lysosomes proves to be distinct from that of soluble, N-glycosylated, lysosomal enzymes. It was observed that, in macrophages, alternative splicing generates a distinct chitotriosidase mRNA species, encoding a 40-kDa chitotriosidase that is C-terminally truncated. This enzyme is almost identical to the 39-kDa chitotriosidase formed from the 50-kDa precursor by proteolytic processing. It is concluded that the C-terminus present in the 50-kDa chitotriosidase, but absent in the 39-kDa isoform, was found to mediate tight binding to chitin. In the blood stream the secretory 50-kDa chitotriosidase occurs predominantly, whilst in tissues the 39-kDa form is also abundant. These findings are consistent with the data on the synthesis and processing of chitotriosidase in the cultured macrophage model.


Subject(s)
Hexosaminidases/biosynthesis , Isoenzymes/biosynthesis , Macrophages/enzymology , Animals , Cells, Cultured , Enzyme Precursors/biosynthesis , Enzyme Precursors/chemistry , Enzyme Precursors/metabolism , Gaucher Disease/enzymology , Glycosylation , Hexosaminidases/chemistry , Hexosaminidases/metabolism , Humans , Isoelectric Point , Isoenzymes/chemistry , Isoenzymes/metabolism , Lysosomes/enzymology , Macrophages/ultrastructure , Mass Spectrometry , Microscopy, Immunoelectron , Molecular Weight , Protein Processing, Post-Translational
12.
Biochim Biophys Acta ; 1318(1-2): 107-22, 1997 Jan 16.
Article in English | MEDLINE | ID: mdl-9030259

ABSTRACT

Binding of 1 mole 5'-fluorosulfonylbenzoyladenosine (FSBA) per mol F1 induces about 50% inhibition of ATPase activity and 80% inhibition of ITPase activity. The binding of additional ligand results in a further inhibition of both activities. Maximally 5 mol/mol F1, causing complete inhibition of activity, can be bound. Using radioactive FSBA more label is found on alpha-subunits than on beta-subunits under the usual buffer conditions. The modified amino acids are alpha-Tyr300, alpha-Tyr244 and beta-Tyr368. Binding of FSBA, at least up to 3 mol/mol F1, does not result in loss of bound ADP, whether the starting enzyme contains 2, 3 or 4 bound nucleotides. Added adenine nucleotides compete with FSBA only for binding that results in modification of beta-subunits, shifting the alpha/beta ratio of bound label to higher values. It is concluded that the alpha-subunits contain two hydrophobic pockets for the binding of nucleoside moieties, with a different orientation relative to the P-loop. One pocket contains alpha-Tyr244 and alpha-Tyr300, the other beta-Tyr368. Since, however, in the binding of adenine nucleotide di- or triphosphates the P-loop is involved, only one of these ligands can bind per subunit. The previously not understood binding characteristics of several substrate analogues have now become interpretable on the assumption that also the structurally homologous beta-subunits contain 2 pockets where nucleoside moieties can bind. The kinetic effects of FSBA binding indicate that the first FSBA binds at the regulatory site that has a high affinity for ADP and pyrophosphate. Binding of pyrophosphate at this high-affinity regulatory site increases the Vmax of the enzyme, while binding at a second regulatory site, a low-affinity site, increases the rate of binding of FSBA with a factor of about 3. Binding of bicarbonate at this latter site is responsible for the disappearance of the apparent negative cooperativity of the ATPase activity.


Subject(s)
Adenine Nucleotides/metabolism , Adenosine/analogs & derivatives , Affinity Labels/metabolism , Affinity Labels/pharmacology , Proton-Translocating ATPases/chemistry , Proton-Translocating ATPases/metabolism , Adenosine/metabolism , Adenosine/pharmacology , Animals , Binding Sites , Binding, Competitive , Cattle , Diphosphates/pharmacology , Enzyme Inhibitors/metabolism , Enzyme Inhibitors/pharmacology , In Vitro Techniques , Kinetics , Mitochondria, Heart/enzymology , Protein Conformation , Proton-Translocating ATPases/antagonists & inhibitors , Pyrophosphatases/antagonists & inhibitors , Inosine Triphosphatase
13.
J Cell Biochem ; 62(2): 275-89, 1996 Aug.
Article in English | MEDLINE | ID: mdl-8844407

ABSTRACT

The nuclear matrix is the structure that persists after removal of chromatin and loosely bound components from the nucleus. It consists of a peripheral lamina-pore complex and an intricate internal fibrogranular structure. Little is known about the molecular structure of this proteinaceous internal network. Our aim is to identify the major proteins of the internal nuclear matrix of HeLa 53 cells. To this end, a cell fraction containing the internal fibrogranular structure was compared with one from which this structure had been selectively dissociated. Protein compositions were quantitatively analyzed after high-resolution two-dimensional gel electrophoresis. We have identified the 21 most abundant polypeptides that are present exclusively in the internal nuclear matrix. Sixteen of these proteins are heterogeneous nuclear ribonucleoprotein (hnRNP) proteins. B23 (numatrin) is another abundant protein of the internal nuclear matrix. Our results show that most of the quantitatively major polypeptides of the internal nuclear matrix are proteins involved in RNA metabolism, including packaging and transport of RNA.


Subject(s)
HeLa Cells/chemistry , Nuclear Matrix/chemistry , Nuclear Proteins/analysis , Ribonucleoproteins/analysis , Cell Fractionation , Cell Nucleus/chemistry , Electrophoresis, Gel, Two-Dimensional , Heterogeneous-Nuclear Ribonucleoproteins , Humans , Nuclear Matrix/ultrastructure , Nucleophosmin , Vimentin/analysis
14.
Mol Biochem Parasitol ; 79(1): 47-59, 1996 Jul.
Article in English | MEDLINE | ID: mdl-8844671

ABSTRACT

Cytochrome c oxidase was purified from the mitochondrial lysate of the insect trypanosomatid Crithidia fasciculata with the aid of a methyl hydrophobic interaction column in a rapid one-step procedure. The purified complex displayed all characteristics expected from a eukaryotic cytochrome c oxidase: the presence of CuA in electron paramagnetic resonance analysis, a characteristic 605 nm peak in reduced-minus-oxidized optical spectroscopy, and the capacity to efficiently oxidize homologous, but not heterologous, cytochrome c. Two-dimensional PAGE showed that C. fasciculata cytochrome c oxidase consists of at least 10 different subunits. N-terminal sequences were obtained from the six smallest subunits of the complex, one of them showing significant similarity to Neurospora crassa cytochrome c oxidase subunit V. The N-terminus of each of the four largest subunits was found to be blocked.


Subject(s)
Crithidia fasciculata/enzymology , Electron Transport Complex IV/isolation & purification , Amino Acid Sequence , Animals , Electron Spin Resonance Spectroscopy , Electron Transport Complex IV/chemistry , Electron Transport Complex IV/metabolism , Insecta/parasitology , Kinetics , Molecular Sequence Data , Protein Conformation , Sequence Analysis , Sequence Homology, Amino Acid , Spectrophotometry
15.
FEBS Lett ; 381(1-2): 123-6, 1996 Feb 26.
Article in English | MEDLINE | ID: mdl-8641419

ABSTRACT

The sequence of subunit 8 of cytochrome c oxidase from Crithidia fasciculata was determined by sequencing cDNA and N-terminus of the mature protein (Mr = 15.7 kDA). The (inferred) protein is homologous to mammalian cox IV and the corresponding cox subunits from yeast, Neurospora crassa and Dictyostelium discoideum, which is reflected in a very similar hydropathy profile. Elements that are conserved in the C. fasciculata sequence include (i) an N-terminal (D/E)-(K/R)-X-K-(X2)-W-(X2)-(I/L) motif, (ii) a putative membrane-spanning region in the middle portion of the protein, and (iii) a C-terminal W-(X13)-(N/D)-P motif. The C. fasciculata protein is synthesized with a cleavable presequence.


Subject(s)
Crithidia fasciculata/enzymology , Electron Transport Complex IV/biosynthesis , Electron Transport Complex IV/chemistry , Amino Acid Sequence , Animals , Base Sequence , Conserved Sequence , DNA Primers , DNA, Complementary , Electron Transport Complex IV/isolation & purification , Electrophoresis, Polyacrylamide Gel , Macromolecular Substances , Mammals , Mice , Molecular Sequence Data , Molecular Weight , Polymerase Chain Reaction , Protein Conformation , Recombinant Proteins/biosynthesis , Recombinant Proteins/chemistry , Recombinant Proteins/isolation & purification , Sequence Homology, Amino Acid
16.
Eur J Biochem ; 229(2): 566-74, 1995 Apr 15.
Article in English | MEDLINE | ID: mdl-7744081

ABSTRACT

Using reverse transcription of messenger RNA followed by amplification using the polymerase chain reaction, three overlapping cDNA fragments encompassing the encoding sequence of the vanadium chloroperoxidase from the fungus Curvularia inaequalis were isolated and sequenced. The sequence was confirmed by DNA sequence analysis of genomic DNA. The deduced amino acid sequence predicts a protein of 609 residues with a mass of 67488 Da. Competitive reverse-transcription polymerase chain reaction analysis indicates that vanadium chloroperoxidase expression takes place in the secondary-growth phase initiated by nutrient depletion. Southern-blot analysis of genomic DNA indicates that there is only a single gene encoding the vanadium chloroperoxidase and that no isoenzymes are present. The N-terminal amino acid residue was blocked and could not be determined by amino acid sequencing, although evidence is presented showing that the N-terminal region starts very close to the first encoded methionine residue. Although the vanadium chloroperoxidase is secreted, it was not possible to assign a leader peptide. The protein contains two putative N-glycosylation sites but experiments indicate that the protein is non-glycosylated. Two cysteine residues are present in the protein both as free thiols: no disulphide bridging was found. Metal analysis revealed that iron, copper, and calcium do not constitute part of the protein. Zinc was found at a ratio of 0.3 +/- 0.04 mol/mol protein. Boiling and subsequent SDS/PAGE of the protein sample showed a typical degradation pattern of the enzyme. Amino acid sequence analysis of the resulting peptides showed that the cleavage took place at Asp-Pro bonds of which six are located throughout the protein. No sequence similarity with other known peroxidases was found except for one small region, sharing limited similarity with bacterial haloperoxidases and other alpha/beta-hydrolase-fold enzymes. In the case of the bacterial bromoperoxidases from this group, a methionine located in this region was suggested to have a role in catalysis. Methionine, however, was not involved in the catalysis of the vanadium chloroperoxidase.


Subject(s)
Chloride Peroxidase/chemistry , Chloride Peroxidase/genetics , Fungi/enzymology , Genes, Fungal , Amino Acid Sequence , Base Sequence , Cloning, Molecular , DNA, Complementary/genetics , Disulfides/chemistry , Fungal Proteins/chemistry , Gene Expression , Glycoproteins/chemistry , Molecular Sequence Data , Peptides/chemistry , RNA, Messenger/genetics , Sequence Alignment , Sequence Homology, Amino Acid , Vanadium/chemistry
17.
J Biol Chem ; 270(5): 2198-202, 1995 Feb 03.
Article in English | MEDLINE | ID: mdl-7836450

ABSTRACT

Recently we noted (Hollak, C.E.M., van Weely, S., van Oers, M.H.J., and Aerts, J.M.F.G. (1994) J. Clin. Invest. 93, 1288-1292) that the clinical manifestation of Gaucher disease is associated with a several hundred-fold increase in chitotriosidase activity in plasma. We report on the purification and characterization of the protein. Two major isoforms of chitotriosidase with isoelectric points of 7.2 and 8.0 and molecular masses of 50 and 39 kDa, respectively, were purified from the spleen of a Gaucher patient. The N-terminal amino acid sequence of the two forms proved to be identical. An antiserum raised against the purified 39-kDa chitotriosidase precipitated all isozymes. Chitotriosidase activity was earlier found to be completely absent in some individuals. These findings in combination suggest that a single gene may encode the different isoforms of chitotriosidase. Both the N-terminal sequence and an internal sequence chitotriosidase proved to be homologous to sequences in proteins that are members of the chitinase family (Hakala, B.E., White,C., and Recklies, A.D. (1993) J. Biol. Chem. 268, 25803-25810). The human chitotriosidase described here showed chitinolytic activity toward artificial substrates as well as chitin and may therefore be considered to be a chitinase.


Subject(s)
Hexosaminidases/isolation & purification , Amino Acid Sequence , Chitinases/chemistry , Chitinases/metabolism , Gaucher Disease/enzymology , Hexosaminidases/metabolism , Humans , Isoelectric Point , Isoenzymes/isolation & purification , Molecular Sequence Data , Molecular Weight , Sequence Alignment , Sequence Homology, Amino Acid , Spleen/enzymology
18.
Acta Histochem ; 96(1): 19-32, 1994 Mar.
Article in English | MEDLINE | ID: mdl-8030381

ABSTRACT

Immuno- and enzyme cytochemical procedures were tested for their applicability to determine quantitatively the concentration and the activity of cytochrome c oxidase (COX) in tissue sections of fish spinal cord and sections of cultured human Molt-4 cells. Sections of gelatin gels containing known amounts of human skeletal muscle COX served as standard sections. The selected procedures fulfilled an important criterion for valid quantitative cytochemistry: the amount of final reaction product was linearly related with section thickness. When the immuno- and enzyme cytochemical methods were applied to sections of fish spinal neurons or cultured human cells, the COX concentration appeared to correlate significantly with COX activity. These cytochemical methods might therefore be valuable to detect differences in molecular COX activities between individual cell types as may occur in tissue sections of biopsies taken from patients with mitochondrial dysfunctions.


Subject(s)
Electron Transport Complex IV/metabolism , Spinal Cord/enzymology , Animals , Antibodies, Monoclonal , Blotting, Western , Cells, Cultured , Electrophoresis, Polyacrylamide Gel , Frozen Sections , Histocytochemistry , Humans , Immunohistochemistry , Muscles/cytology , Muscles/enzymology , Tissue Fixation , Zebrafish
19.
Eur J Biochem ; 205(3): 1145-54, 1992 May 01.
Article in English | MEDLINE | ID: mdl-1315683

ABSTRACT

Human cytochrome c oxidase was purified in a fully active form from heart and skeletal muscle. The enzyme was selectively solubilised with octylglucoside and KCl from submitochondrial particles followed by ammonium sulphate fractionation. The presteady-state and steady-state kinetic properties of the human cytochrome c oxidase preparations with either human cytochrome c or horse cytochrome c were studied spectrophotometrically and compared with those of bovine heart cytochrome c oxidase. The interaction between human cytochrome c and human cytochrome c oxidase proved to be highly specific. It is proposed that for efficient electron transfer to occur, a conformational change in the complex is required, thereby shifting the initially unfavourable redox equilibrium. The very slow presteady-state reaction between human cytochrome c oxidase and horse cytochrome c suggests that, in this case, the conformational change does not occur. The proposed model was also used to explain the steady-state kinetic parameters under various conditions. At high ionic strength (I = 200 mM, pH 7.4), the kcat was highly dependent on the type of oxidase and it is proposed that the internal electron transfer is the rate-limiting step. The kcat value of the 'high-affinity' phase, observed at low ionic strength (I = 18 mM, pH 7.4), was determined by the cytochrome c/cytochrome c oxidase combination applied, whereas the Km was highly dependent only on the type of cytochrome c used. Our results suggest that, depending on the cytochrome c/cytochrome c oxidase combination, either the dissociation of ferricytochrome c or the internal electron transfer is the rate-limiting step in the 'high-affinity' phase at low ionic strength. The 'low-affinity' kcat value was not only determined by the type of oxidase used, but also by the type of cytochrome c. It is proposed that the internal electron-transfer rate of the 'low-affinity' reaction is enhanced by the binding of a second molecule of cytochrome c.


Subject(s)
Electron Transport Complex IV/metabolism , Animals , Cattle , Cytochrome c Group/metabolism , Electrophoresis, Polyacrylamide Gel , Horses , Humans , Kinetics , Osmolar Concentration , Protein Conformation
20.
Eur J Biochem ; 205(2): 737-42, 1992 Apr 15.
Article in English | MEDLINE | ID: mdl-1315274

ABSTRACT

Human neutrophilic myeloperoxidase (MPO) is involved in the defence mechanism of the body against micro-organisms. The enzyme catalyses the generation of the strong oxidant hypochlorous acid (HOCl) from hydrogen peroxide and chloride ions. In normal neutrophils MPO is present in the dimeric form (140 kDa). The disulphide-linked protomers each consist of a heavy subunit and a light one. Reductive alkylation converts the dimeric enzyme into two promoters, 'hemi-myeloperoxidase'. We studied the initial activities of human dimeric MPO and hemi-MPO at the physiological pH of 7.2 and found no significant differences in chlorinating activity. These results indicate that, at least at neutral pH, the protomers of MPO function independently. The absorption spectra of MPO compounds II and III, both inactive forms concerning HOCl generation, and the rate constants of their formation were the same for dimeric MPO and hemi-MPO, but hemi-MPO required a slightly larger excess of H2O2 for complete conversion. Hemi-MPO was less stable at a high temperature (80 degrees C) as compared to the dimeric enzyme. Furthermore, the resistance of the chlorinating activity of hemi-MPO against its oxidative product hypochlorous acid was somewhat lower (IC50 = 32 microM HOCl) compared to dimeric MPO (IC50 = 50 microM HOCl). The higher stability of dimeric MPO in the presence of its oxidative product compared to that of monomeric MPO might be the reason for the occurrence of MPO as a dimer.


Subject(s)
Chlorides/metabolism , Hypochlorous Acid/metabolism , Leukocytes/enzymology , Peroxidase/blood , Enzyme Stability , Hot Temperature , Humans , Hydrogen Peroxide/metabolism , Hydrogen-Ion Concentration , Kinetics , Macromolecular Substances , Peroxidase/isolation & purification , Spectrophotometry , Thermodynamics
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