SARS-CoV-2 Surveillance of Wild Mice and Rats in North American Cities.

From July 2020 to June 2021, 248 wild house mice (Mus musculus), deer mice (Peromyscus maniculatus), brown rats (Rattus norvegicus), and black rats (Rattus rattus) from Texas and Washington, USA, and British Columbia, Canada, were tested for SARS-CoV-2 exposure and infection. Two brown rats and 11 house mice were positive for neutralizing antibodies using a surrogate virus neutralization test, but negative or indeterminate with the Multiplexed Fluorometric ImmunoAssay COVID-Plex, which targets full-length spike and nuclear proteins. Oro-nasopharyngeal swabs and fecal samples tested negative by RT-qPCR, with an indeterminate fecal sample in one house mouse. Continued surveillance of SARS-CoV-2 in wild rodents is warranted.

Pathogen Prevalence Estimates and Diagnostic Methodology Trends in Laboratory Mice and Rats from 2003 to 2020.

Rodents used in biomedical research are maintained as specific pathogen-free (SPF) by employing biosecurity measures that eliminate and exclude adventitious infectious agents known to confound research. The efficacy of these practices is assessed by routine laboratory testing referred to as health monitoring (HM). This study summarizes the results of HM performed at Charles River Research Animal Diagnostic Services (CR-RADS) on samples submitted by external (non-Charles River) clients between 2003 and 2020. Summarizing this vast amount of data has been made practicable by the recent introduction of end-user business intelligence tools to Excel. HM summaries include the number of samples tested and the percent positive by diagnostic methodology, including direct examination for parasites, cultural isolation and identification for bacteria, serology for antibodies to viruses and fastidious microorganisms, and polymerase chain reaction (PCR) assays for pathogen-specific genomic sequences. Consistent with comparable studies, the percentages of pathogen-positive samples by diagnostic methodology and year interval are referred to as period prevalence estimates (%PE). These %PE substantiate the elimination of once common respiratory pathogens, such as Sendai virus, and reductions in the prevalence of other agents considered common, such as the rodent coronaviruses and parvoviruses. Conversely, the %PE of certain pathogens, for example, murine norovirus (MNV), Helicobacter, Rodentibacter, and parasites remain high, perhaps due to the increasing exchange of genetically engineered mutant (GEM) rodents among researchers and the challenges and high cost of eliminating these agents from rodent housing facilities. Study results also document the growing role of PCR in HM because of its applicability to all pathogen types and its high specificity and sensitivity; moreover, PCR can detect pathogens in samples collected antemortem directly from colony animals and from the environment, thereby improving the detection of host-adapted, environmentally unstable pathogens that are not efficiently transmitted to sentinels by soiled bedding.

Strontium isotopes and concentrations in cremated bones suggest an increased salt consumption in Gallo-Roman diet.

The high temperatures reached during cremation lead to the destruction of organic matter preventing the use of traditional isotopic methods for dietary reconstructions. Still, strontium isotope (87Sr/86Sr) and concentration ([Sr]) analyses of cremated human remains offer a novel way to assess changing consumption patterns in past populations that practiced cremation, as evidenced by a large amount of new data obtained from Metal Ages and Gallo-Roman human remains from Destelbergen, Belgium. The Gallo-Roman results show significantly higher [Sr] and a narrower interquartile range in 87Sr/86Sr (0.7093-0.7095), close to the value of modern-day seawater (0.7092). This contrasts with the Metal Ages results, which display lower concentrations and a wider range in 87Sr/86Sr (0.7094-0.7098). This typical Sr signature is also reflected in other sites and is most likely related to an introduction of marine Sr in the form of salt as a food preservative (e.g. salt-rich preserved meat, fish and fish sauce). Paradoxically, this study highlights caution is needed when using 87Sr/86Sr for palaeomobility studies in populations with high salt consumption.

These boots are made for burnin': Inferring the position of the corpse and the presence of leather footwears during cremation through isotope (δ13C, δ18O) and infrared (FTIR) analyses of experimentally burnt skeletal remains.

Cremation is a complex mortuary practice, involving a number of activities of the living towards the dead before, during, and after the destruction of the bodily soft tissues by fire. The limiting information concerning these behavioral patterns obtained from the pyre remains and/or cremation deposits prevents the reconstruction of the handling of the corpse during the burning process. This pioneering study tries to determine the initial positioning of the corpse in the pyre and assess whether the deceased was wearing closed leather shoes during cremation through isotopic (δ13C, δ18O) and infrared (ATR-FTIR) analyses of experimentally burnt pig remains, used as a proxy for humans. The results obtained show that both the position of feet on or within the pyre and the presence of footwears may moderately-to-highly influence the oxygen isotope ratios of bone apatite carbonates and the cyanamide content of calcined bone in certain situations. By forming a protective layer, shoes appear to temporarily delay the burning of the underlying pig tissues and to increase the heat-shielding effect of the soft tissues protecting the bone mineral fraction. In such case, bioapatite bone carbonates exchange oxygen with a relatively more 18O-depleted atmosphere (due to the influence of lignin-derived oxygen rather than cellulose-derived oxygen), resulting in more pronounced decrease in the δ18Ocarb values during burning of the shoed feet vs. unshoed feet. The shift observed here was as high as 2.5‰. A concomitant isotopic effect of the initial location of the feet in the pyres was also observed, resulting in a top-to-bottom decrease difference in the δ18Ocarb values of shoed feet of about 1.4‰ between each deposition level tested. Finally, the presence of cyanamide (CN/P ≥ 0.02) seems to be indicative of closed footwear since the latter creates favorable conditions for its incorporation into bone apatite.

Revisiting metric sex estimation of burnt human remains via supervised learning using a reference collection of modern identified cremated individuals (Knoxville, USA).

OBJECTIVES: This study aims to increase the rate of correctly sexed calcined individuals from archaeological and forensic contexts. This is achieved by evaluating sexual dimorphism of commonly used and new skeletal elements via uni- and multi-variate metric trait analyses. MATERIALS AND METHODS: Twenty-two skeletal traits were evaluated in 86 individuals from the William M. Bass donated cremated collection of known sex and age-at-death. Four different predictive models, logistic regression, random forest, neural network, and calculation of population specific cut-off points, were used to determine the classification accuracy (CA) of each feature and several combinations thereof. RESULTS: An overall CA of ≥ 80% was obtained for 12 out of 22 features (humerus trochlea max., and lunate length, humerus head vertical diameter, humerus head transverse diameter, radius head max., femur head vertical diameter, patella width, patella thickness, and talus trochlea length) using univariate analysis. Multivariate analysis showed an increase of CA (≥ 95%) for certain combinations and models (e.g., humerus trochlea max. and patella thickness). Our study shows metric sexual dimorphism to be well preserved in calcined human remains, despite the changes that occur during burning. CONCLUSIONS: Our study demonstrated the potential of machine learning approaches, such as neural networks, for multivariate analyses. Using these statistical methods improves the rate of correct sex estimations in calcined human remains and can be applied to highly fragmented unburnt individuals from both archaeological and forensic contexts.

Estimating age-at-death in burnt adult human remains using the Falys-Prangle method.

OBJECTIVES: The Falys-Prangle-method assesses age-related morphological changes to the sternal clavicle end (SCE), enabling the observation of mature adults from the 5th decade onwards in unburnt human skeletal remains. The aim of this study is to investigate the applicability of the Falys-Prangle-method on burnt human remains. MATERIALS AND METHODS: Fifty-two SCE of 40 cremated individuals (out of 86) from the William M. Bass collection of the Forensic Anthropology Center (Knoxville, Tennessee) of known age-at-death and sex are available for assessment. Surface topography, porosity, and osteophyte formation are evaluated, after which the calculated composite score is associated with the corresponding age range as described by Falys and Prangle. The method is also applied on an archaeological case study from Oudenburg, Belgium, dating to the Roman period. RESULTS: The assessed age ranges strongly agree with the true age ranges (α = 0.828), suggesting the Falys-Prangle-method to be applicable on burnt human remains. The case study from Oudenburg yields markedly improved age-at-death estimates, significantly enhancing our understanding of the age distribution within this community. DISCUSSION: Information on age-at-death is key in the construction of biological profiles of past individuals. The mature adult is often invisible in the archaeological record since most macroscopic age estimation methods do not distinguish beyond 46+ years old. Our study stresses the usefulness of a large-scale application of the Falys-Prangle-method, which will increase the visibility of mature adults, especially in archaeological burnt human skeletal collections, where such information is, at present, extremely difficult to obtain.

Using Hysterectomy Rederivation to Produce Guinea Pigs (Cavia porcellus) Free of Guinea Pig Cytomegalovirus.

Due to similarities in placentation, guinea pigs can be used as models of human cytomegalovirus infection, but they mustbe free of guinea pig cytomegalovirus. Many commercial guinea pig colonies are enzootically infected with guinea pigcytomegalovirus, which can be transmitted vertically as well as horizontally through saliva, vaginal secretions, and milk.These characteristics make its eradication in a commercial setting challenging. Because embryo transfer technology in guineapigs is in its infancy, it is not generally a viable option for obtaining animals free of guinea pig cytomegalovirus. However,a combination of hysterectomy rederivation and testing by PCR assay and serology of both dams and offspring from anenzootically infected colony produced offspring free of guinea pig cytomegalovirus.

The effect of early life experience, environment, and genetic factors on spontaneous home-cage aggression-related wounding in male C57BL/6 mice.

Aggression is a major welfare issue in mice, particularly when mice unfamiliar to each other are first placed in cages, as happens on receipt from a vendor, and following cage cleaning. Injuries from aggression are the second leading cause of unplanned euthanasia in mice, following ulcerative dermatitis. Commonly employed strategies for reducing aggression-related injury are largely anecdotal, and may even be counterproductive. Here we report a series of experiments testing potential explanations and interventions for post-shipping aggression-related injuries in C57BL/6 mice. First, we examined the effects of weaning: testing whether manipulating weaning age reduced aggression-related injuries, and if repeated mixing of weaned mice before shipping increased these injuries. Contrary to our predictions, repeated mixing did not increase post-shipping injurious aggression, and early weaning reduced aggression-related injuries. Second, we examined potential post-shipping interventions: testing whether lavender essential oil applied to the cage reduced aggression-related injuries, and whether a variety of enrichments decreased injurious aggression. Again, contrary to predictions, lavender increased wounding, and none of the enrichments reduced it. However, consistent with the effects of weaning age in the first experiment, cages with higher mean body weight showed elevated levels of aggression-related wounding. Finally, we tested whether C57BL/6 substrains and identification methods affected levels of intra-cage wounding from aggression. We found no effect of strain, but cages where mice were ear-notched for identification showed higher levels of wounding than cages where mice were tail-tattooed. Overall, these results emphasize the multifactorial nature of home-cage injurious aggression, and the importance of testing received wisdom when it comes to managing complex behavioral and welfare problems. In terms of practical recommendations to reduce aggressive wounding in the home cage, tail tattooing is recommended over ear notching and late weaning should be avoided.

Manual restraint and common compound administration routes in mice and rats.

Being able to safely and effectively restrain mice and rats is an important part of conducting research. Working confidently and humanely with mice and rats requires a basic competency in handling and restraint methods. This article will present the basic principles required to safely handle animals. One-handed, two-handed, and restraint with specially designed restraint objects will be illustrated. Often, another part of the research or testing use of animals is the effective administration of compounds to mice and rats. Although there are a large number of possible administration routes (limited only by the size and organs of the animal), most are not used regularly in research. This video will illustrate several of the more common routes, including intravenous, intramuscular, subcutaneous, and oral gavage. The goal of this article is to expose a viewer unfamiliar with these techniques to basic restraint and substance administration routes. This video does not replace required hands-on training at your facility, but is meant to augment and supplement that training.

Principles of rodent surgery for the new surgeon.

For both scientific and animal welfare reasons, training in basic surgical concepts and techniques should be undertaken before ever seeking to perform surgery on a rodent. Students, post-doctoral scholars, and others interested in performing surgery on rodents as part of a research protocol may not have had formal surgical training as part of their required coursework. Surgery itself is a technical skill, and one that will improve with practice. The principles of aseptic technique, however, often remain unexplained or untaught. For most new surgeons, this vital information is presented in piecemeal fashion or learned on the job, neither of which is ideal. It may also make learning how to perform a particular surgery difficult, as the new surgeon is learning both a surgical technique and the principles of asepsis at the same time. This article summarizes and makes recommendations for basic surgical skills and techniques necessary for successful rodent surgery. This article is designed to supplement hands-on training by the user's institution.

Method of feed presentation affects the growth of Mongolian gerbils (Meriones unguiculatus).

The Animal Welfare Regulations, which define legal requirements for the care and use of gerbils in research and testing, and the Guide for the Care and Use of Laboratory Animals describe feeding practices for several species of rodents but not Mongolian gerbils (Meriones unguiculatus). To investigate whether the method of feed presentation affected reproduction and growth of gerbils, we compared the reproductive performance and rate of growth of gerbils fed on the cage floor, by hopper (J-feeder), or by wire-bar cage lid. Reproductive parameters of 10 breeding pairs for each method of feeding were followed for 63 d and did not differ between methods. To investigate the effect of feeding method on weight gain in juvenile gerbils, groups of 80 male and 80 female weanling gerbils per feeding method were fed for 5 consecutive weeks after weaning and weighed weekly. Gerbils fed on the cage floor and by means of J-feeders were significantly heavier than were those fed by using a wire-bar top. Our findings indicate that feeding gerbils by using J-feeders or on the cage floor are both acceptable practices.