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1.
Cell ; 186(9): 1930-1949.e31, 2023 04 27.
Article in English | MEDLINE | ID: mdl-37071993

ABSTRACT

Cortical circuits are composed predominantly of pyramidal-to-pyramidal neuron connections, yet their assembly during embryonic development is not well understood. We show that mouse embryonic Rbp4-Cre cortical neurons, transcriptomically closest to layer 5 pyramidal neurons, display two phases of circuit assembly in vivo. At E14.5, they form a multi-layered circuit motif, composed of only embryonic near-projecting-type neurons. By E17.5, this transitions to a second motif involving all three embryonic types, analogous to the three adult layer 5 types. In vivo patch clamp recordings and two-photon calcium imaging of embryonic Rbp4-Cre neurons reveal active somas and neurites, tetrodotoxin-sensitive voltage-gated conductances, and functional glutamatergic synapses, from E14.5 onwards. Embryonic Rbp4-Cre neurons strongly express autism-associated genes and perturbing these genes interferes with the switch between the two motifs. Hence, pyramidal neurons form active, transient, multi-layered pyramidal-to-pyramidal circuits at the inception of neocortex, and studying these circuits could yield insights into the etiology of autism.


Subject(s)
Autistic Disorder , Neocortex , Pyramidal Cells , Animals , Female , Mice , Pregnancy , Autistic Disorder/genetics , Autistic Disorder/pathology , Mutation , Neocortex/physiology , Neurons/physiology , Pyramidal Cells/physiology
2.
PLoS Biol ; 21(4): e3002070, 2023 04.
Article in English | MEDLINE | ID: mdl-37011100

ABSTRACT

During development, patterned neural activity instructs topographic map refinement. Axons with similar patterns of neural activity converge onto target neurons and stabilize their synapses with these postsynaptic partners, restricting exploratory branch elaboration (Hebbian structural plasticity). On the other hand, non-correlated firing in inputs leads to synapse weakening and increased exploratory growth of axons (Stentian structural plasticity). We used visual stimulation to control the correlation structure of neural activity in a few ipsilaterally projecting (ipsi) retinal ganglion cell (RGC) axons with respect to the majority contralateral eye inputs in the optic tectum of albino Xenopus laevis tadpoles. Multiphoton live imaging of ipsi axons, combined with specific targeted disruptions of brain-derived neurotrophic factor (BDNF) signaling, revealed that both presynaptic p75NTR and TrkB are required for Stentian axonal branch addition, whereas presumptive postsynaptic BDNF signaling is necessary for Hebbian axon stabilization. Additionally, we found that BDNF signaling mediates local suppression of branch elimination in response to correlated firing of inputs. Daily in vivo imaging of contralateral RGC axons demonstrated that p75NTR knockdown reduces axon branch elongation and arbor spanning field volume.


Subject(s)
Brain-Derived Neurotrophic Factor , Dendrites , Brain-Derived Neurotrophic Factor/physiology , Dendrites/physiology , Retinal Ganglion Cells/physiology , Axons/physiology , Synapses/physiology
3.
J Am Chem Soc ; 145(9): 5242-5251, 2023 Mar 08.
Article in English | MEDLINE | ID: mdl-36812448

ABSTRACT

Rational innovation of electrocatalysts requires detailed knowledge of spatial property variations across the solid-electrolyte interface. We introduce correlative atomic force microscopy (AFM) to simultaneously probe, in situ and at the nanoscale, electrical conductivity, chemical-frictional, and morphological properties of a bimetallic copper-gold system for CO2 electroreduction. In air, water, and bicarbonate electrolyte, current-voltage curves reveal resistive CuOx islands in line with local current contrasts, while frictional imaging indicates qualitative variations in the hydration layer molecular ordering upon change from water to electrolyte. Nanoscale current contrast on polycrystalline Au shows resistive grain boundaries and electrocatalytically passive adlayer regions. In situ conductive AFM imaging in water shows mesoscale regions of low current and reveals that reduced interfacial electric currents are accompanied by increased friction forces, thus indicating variations in the interfacial molecular ordering affected by the electrolyte composition and ionic species. These findings provide insights into how local electrochemical environments and adsorbed species affect interfacial charge transfer processes and support building in situ structure-property relationships in catalysis and energy conversion research.

4.
Neuron ; 110(12): 2024-2040.e10, 2022 06 15.
Article in English | MEDLINE | ID: mdl-35452606

ABSTRACT

General anesthetics induce loss of consciousness, a global change in behavior. However, a corresponding global change in activity in the context of defined cortical cell types has not been identified. Here, we show that spontaneous activity of mouse layer 5 pyramidal neurons, but of no other cortical cell type, becomes consistently synchronized in vivo by different general anesthetics. This heightened neuronal synchrony is aperiodic, present across large distances, and absent in cortical neurons presynaptic to layer 5 pyramidal neurons. During the transition to and from anesthesia, changes in synchrony in layer 5 coincide with the loss and recovery of consciousness. Activity within both apical and basal dendrites is synchronous, but only basal dendrites' activity is temporally locked to somatic activity. Given that layer 5 is a major cortical output, our results suggest that brain-wide synchrony in layer 5 pyramidal neurons may contribute to the loss of consciousness during general anesthesia.


Subject(s)
Anesthetics, General , Pyramidal Cells , Anesthesia, General , Anesthetics, General/pharmacology , Animals , Dendrites/physiology , Mice , Pyramidal Cells/physiology , Unconsciousness
5.
Cell ; 182(6): 1623-1640.e34, 2020 09 17.
Article in English | MEDLINE | ID: mdl-32946783

ABSTRACT

Human organoids recapitulating the cell-type diversity and function of their target organ are valuable for basic and translational research. We developed light-sensitive human retinal organoids with multiple nuclear and synaptic layers and functional synapses. We sequenced the RNA of 285,441 single cells from these organoids at seven developmental time points and from the periphery, fovea, pigment epithelium and choroid of light-responsive adult human retinas, and performed histochemistry. Cell types in organoids matured in vitro to a stable "developed" state at a rate similar to human retina development in vivo. Transcriptomes of organoid cell types converged toward the transcriptomes of adult peripheral retinal cell types. Expression of disease-associated genes was cell-type-specific in adult retina, and cell-type specificity was retained in organoids. We implicate unexpected cell types in diseases such as macular degeneration. This resource identifies cellular targets for studying disease mechanisms in organoids and for targeted repair in human retinas.


Subject(s)
Cell Differentiation/genetics , Organoids/cytology , Organoids/metabolism , Retina/cytology , Retina/metabolism , Single-Cell Analysis/methods , Synapses/physiology , Transcriptome/genetics , Cell Culture Techniques/methods , Cell Line , Electrophysiology , Female , Gene Expression Regulation, Developmental/genetics , Genetic Predisposition to Disease/genetics , Humans , In Situ Hybridization , Induced Pluripotent Stem Cells/cytology , Induced Pluripotent Stem Cells/metabolism , Microscopy, Electron , Multigene Family , Naphthoquinones , Organoids/radiation effects , Organoids/ultrastructure , Retina/pathology , Retina/radiation effects
6.
Proc Natl Acad Sci U S A ; 117(20): 10636-10638, 2020 05 19.
Article in English | MEDLINE | ID: mdl-32366647

ABSTRACT

In a small fraction of Xenopus tadpoles, a single retinal ganglion cell (RGC) axon misprojects to the ipsilateral optic tectum. Presenting flashes of light to the ipsilateral eye causes that ipsilateral axon to fire, whereas stimulating the contralateral eye excites all other RGC inputs to the tectum. We performed time-lapse imaging of individual ipsilaterally projecting axons while stimulating either the ipsilateral or contralateral eye. Stimulating either eye alone reduced axon elaboration by increasing branch loss. New branch additions in the ipsi axon were exclusively increased by contralateral eye stimulation, which was enhanced by expressing tetanus neurotoxin (TeNT) in the ipsilateral axon, to prevent Hebbian stabilization. Together, our results reveal the existence of a non-cell-autonomous "Stentian" signal, engaged by activation of neighboring RGCs, that promotes exploratory axon branching in response to noncorrelated firing.


Subject(s)
Neurogenesis , Neuronal Plasticity , Retinal Ganglion Cells/physiology , Action Potentials , Animals , Axons/physiology , Dendrites/physiology , Retinal Ganglion Cells/cytology , Synaptic Potentials , Vision, Ocular , Xenopus
7.
J Orthop Surg Res ; 14(1): 437, 2019 Dec 12.
Article in English | MEDLINE | ID: mdl-31831022

ABSTRACT

BACKGROUND: The purpose of this study was to compare restoration of mechanical limb alignment and three-dimensional component-positioning between conventional and patient-specific instrumentation in total knee arthroplasty. METHODS: Radiographic data of patients undergoing mobile-bearing total knee arthroplasty (n = 1257), using either conventional (n = 442) or patient-specific instrumentation (n = 812), were analyzed. To evaluate accuracy of axis restoration and 3D-component-positioning between conventional and patient-specific instrumentation, absolute deviations from the targeted neutral mechanical limb alignment and planned implant positions were determined. Measurements were performed on standardized coronal long-leg and sagittal knee radiographs. CT-scans were evaluated for accuracy of axial femoral implant rotation. Outliers were defined as deviations from the targeted neutral mechanical axis of > ± 3° or from the intraoperative component-positioning goals of > ± 2°. Deviations greater than ± 5° from set targets were considered to be severe outliers. RESULTS: Deviations from a neutral mechanical axis (conventional instrumentation: 2.3°± 1.7° vs. patient-specific instrumentation: 1.7°± 1.2°; p < 0.001) and numbers of outliers (conventional instrumentation: 25.8% vs. patient-specific instrumentation: 10.1%; p < 0.001) were significantly lower in the patient-specific instrumentation group. Significantly lower mean deviations and less outliers were detected regarding 3D-component-positioning in the patient-specific instrumentation compared to the conventional instrumentation group (all p < 0.05). CONCLUSIONS: Patient-specific instrumentation prevented from severe limb malalignment and component-positioning outliers (> ± 5° deviation). Use of patient-specific instrumentation proved to be superior to conventional instrumentation in achieving more accurate limb alignment and 3D-component positioning, particularly regarding femoral component rotation. Furthermore, the use of patient-specific instrumentation successfully prevented severe (> 5° deviation) outliers.


Subject(s)
Arthroplasty, Replacement, Knee/methods , Bone Malalignment/prevention & control , Osteoarthritis, Knee/surgery , Patient Positioning/methods , Aged , Arthroplasty, Replacement, Knee/adverse effects , Bone Malalignment/diagnostic imaging , Female , Humans , Imaging, Three-Dimensional/methods , Knee Joint/diagnostic imaging , Knee Joint/pathology , Knee Prosthesis , Leg/diagnostic imaging , Male , Middle Aged , Models, Anatomic , Osteoarthritis, Knee/diagnostic imaging , Precision Medicine/methods , Preoperative Care/methods , Radiography , Tomography, X-Ray Computed/methods
8.
Biochim Biophys Acta Mol Cell Res ; 1865(11 Pt A): 1598-1610, 2018 11.
Article in English | MEDLINE | ID: mdl-30327201

ABSTRACT

ADAM17, a prominent member of the "Disintegrin and Metalloproteinase" (ADAM) family, controls vital cellular functions through cleavage of transmembrane substrates including TGF-alpha, Amphiregulin (AREG) and TNF-Receptor 1 (TNFR1). We recently presented evidence that surface exposure of phosphatidylserine (PS) is pivotal for ADAM17 to exert sheddase activity. Anoctamin-6 (ANO6) has Ca2+-dependent phospholipid scramblase activity and it followed that the functions of ANO6 and ADAM17 might be linked. We report that overexpression of ANO6 in HEK293T cells led to increased Ca2+-mediated PS-exposure that was indeed accompanied by enhanced release of AREG and TGF-alpha. The effect was not observed when cells were treated with the PKC-dependent ADAM17 activator PMA. Transformation of cells with a constitutively active ANO6 mutant led to spontaneous PS-exposure and to the release of ADAM17-substrates in the absence of any stimuli. Inhibitor experiments indicated that ANO6-mediated enhancement of substrate cleavage simultaneously broadened the spectrum of participating metalloproteinases. In complementary experiments, siRNA-mediated downregulation of ANO6 was shown to decrease ionophore-mediated release of TNFR1 in human umbilical vein endothelial cells (HUVECs). We conclude that ANO6, by virtue of its scramblase activity, may play a role as an important regulator of the ADAM-network in the plasma membrane.


Subject(s)
ADAM Proteins/metabolism , Anoctamins/metabolism , Phosphatidylserines/metabolism , Phospholipid Transfer Proteins/metabolism , Phospholipids/metabolism , ADAM17 Protein/metabolism , Calcium/metabolism , Cell Membrane/metabolism , Gene Expression Regulation , HEK293 Cells , Humans , Ionomycin/pharmacology , Models, Biological , Mutation , Transforming Growth Factor alpha/metabolism
9.
Int J Clin Pharmacol Ther ; 56)(3): 142-147, 2018 Mar.
Article in English | MEDLINE | ID: mdl-29292695

ABSTRACT

The use of immunosuppressive agents is associated with an increased risk of the development of certain types of malignancies, particularly lymphoma. Many of these lymphomas are associated with Epstein-Barr virus (EBV), which might be reactivated under immunosuppression. We present the case of a patient with an autoimmune hepatitis who developed EBV-associated Hodgkin-like lymphoma under immunosuppressive treatment with azathioprine. The tumor regressed spontaneously after withdrawal of azathioprine. The development of an EBV-associated Hodgkin-like lymphoma under this immunosuppressive therapy, and especially the regression of the lymphoma after cessation of azathioprine, confirms the relationship between this immunosuppressant, EBV-infection, and the development of Hodgkin-like lymphoma.
.


Subject(s)
Azathioprine/adverse effects , Epstein-Barr Virus Infections , Hepatitis, Autoimmune/drug therapy , Immunosuppressive Agents/adverse effects , Lymphoma/chemically induced , Azathioprine/therapeutic use , Herpesvirus 4, Human , Humans , Immunosuppressive Agents/therapeutic use , Lymphoma/virology
10.
Nat Biotechnol ; 36(1): 81-88, 2018 01.
Article in English | MEDLINE | ID: mdl-29251729

ABSTRACT

Genetic engineering by viral infection of single cells is useful to study complex systems such as the brain. However, available methods for infecting single cells have drawbacks that limit their applications. Here we describe 'virus stamping', in which viruses are reversibly bound to a delivery vehicle-a functionalized glass pipette tip or magnetic nanoparticles in a pipette-that is brought into physical contact with the target cell on a surface or in tissue, using mechanical or magnetic forces. Different single cells in the same tissue can be infected with different viruses and an individual cell can be simultaneously infected with different viruses. We use rabies, lenti, herpes simplex, and adeno-associated viruses to drive expression of fluorescent markers or a calcium indicator in target cells in cell culture, mouse retina, human brain organoid, and the brains of live mice. Virus stamping provides a versatile solution for targeted single-cell infection of diverse cell types, both in vitro and in vivo.


Subject(s)
Brain/virology , Magnetite Nanoparticles/administration & dosage , Single-Cell Analysis/methods , Viruses/genetics , Animals , Genetic Engineering/trends , Humans , Magnetite Nanoparticles/chemistry , Mice , Organoids/metabolism , Organoids/virology , Retina/metabolism , Retina/virology , Tissue Distribution , Virus Diseases/genetics , Virus Diseases/metabolism , Virus Replication/genetics
11.
Chemotherapy ; 62(6): 367-373, 2017.
Article in English | MEDLINE | ID: mdl-28934748

ABSTRACT

Drug-induced liver injury is one of the main reasons for acute liver failure. We report the case of a young patient who experienced a drug-induced liver injury resulting in life-threatening acute liver failure after treatment with different antibiotics (amoxicillin, ciprofloxacin, cefazolin, clindamycin) and acetaminophen, or a combination of these drugs. Moreover, we provide an overview of the hepatotoxic potential of these drugs.


Subject(s)
Anti-Bacterial Agents/adverse effects , Chemical and Drug Induced Liver Injury/etiology , Alanine Transaminase/blood , Amoxicillin/adverse effects , Amoxicillin/therapeutic use , Anti-Bacterial Agents/therapeutic use , Aspartate Aminotransferases/blood , Cefazolin/adverse effects , Cefazolin/therapeutic use , Female , Humans , Lymphadenitis/drug therapy , Young Adult , gamma-Glutamyltransferase/blood
12.
Biointerphases ; 11(4): 04B312, 2016 12 23.
Article in English | MEDLINE | ID: mdl-28010112

ABSTRACT

Engineered peptides capable of binding to silica have been used to provide contrast in chemical force microscopy and tested for their capacity to selectively capture silica nanoparticles (NPs). Gold coated atomic force microscopy (AFM) microcantilevers with integrated tips and colloidal probes were functionalized with engineered peptides through a thiol group of a terminal cysteine which was linked via a glycine trimer to a 12-mer binding sequence. The functionalized probes demonstrated a significantly increased binding force on silicon oxide areas of a gold-patterned silicon wafer, whereas plain gold probes, and those functionalized with a random permutation of the silica binding peptide motif or an all-histidine sequence displayed similar adhesion forces to gold and silicon oxide. As the functionalized probes also allowed contact mode imaging subsequently to the adhesion mapping, also the associated friction contrast was measured and found to be similar to the adhesion contrast. Furthermore, the adsorption of silica NPs onto planar gold surfaces functionalized in the same manner was observed to be selective. Notably, the surface coverage with silica NPs was found to decrease with increasing pH, implying the importance of electrostatic interactions between the peptide and the NPs. Finally, the adsorption of silica NPs was monitored via the decrease in fundamental resonance frequency of an AFM microcantilever functionalized with silica binding peptides.


Subject(s)
Microscopy, Atomic Force/methods , Nanoparticles/metabolism , Recombinant Proteins/metabolism , Gold/metabolism , Nanoparticles/chemistry , Oxides/metabolism , Protein Binding , Silicon Compounds/metabolism
13.
Front Neural Circuits ; 10: 111, 2016.
Article in English | MEDLINE | ID: mdl-28119574

ABSTRACT

It is well established that spontaneous activity in the developing mammalian brain plays a fundamental role in setting up the precise connectivity found in mature sensory circuits. Experiments that produce abnormal activity or that systematically alter neural firing patterns during periods of circuit development strongly suggest that the specific patterns and the degree of correlation in firing may contribute in an instructive manner to circuit refinement. In fish and amphibians, unlike amniotic vertebrates, sensory input directly drives patterned activity during the period of initial projection outgrowth and innervation. Experiments combining sensory stimulation with live imaging, which can be performed non-invasively in these simple vertebrate models, have provided important insights into the mechanisms by which neurons read out and respond to activity patterns. This article reviews the classic and recent literature on spontaneous and evoked activity-dependent circuit refinement in sensory systems and formalizes a set of mechanistic rules for the transformation of patterned activity into accurate neuronal connectivity in the developing brain.


Subject(s)
Brain/growth & development , Electrophysiological Phenomena/physiology , Neurons/physiology , Retina/growth & development , Visual Pathways/growth & development , Animals
14.
ACS Nano ; 9(8): 8401-11, 2015 Aug 25.
Article in English | MEDLINE | ID: mdl-26218503

ABSTRACT

This article addresses the much debated question whether the degree of hydrophobicity of single-layer graphene (1LG) is different from that of double-layer graphene (2LG). Knowledge of the water affinity of graphene and its spatial variations is critically important as it can affect the graphene properties as well as the performance of graphene devices exposed to humidity. By employing chemical force microscopy with a probe rendered hydrophobic by functionalization with octadecyltrichlorosilane (OTS), the adhesion force between the probe and epitaxial graphene on SiC has been measured in deionized water. Owing to the hydrophobic attraction, a larger adhesion force was measured on 2LG Bernal-stacked domains of graphene surfaces, thus showing that 2LG is more hydrophobic than 1LG. Identification of 1LG and 2LG domains was achieved through Kelvin probe force microscopy and Raman spectral mapping. Approximate values of the adhesion force per OTS molecule have been calculated through contact area analysis. Furthermore, the contrast of friction force images measured in contact mode was reversed to the 1LG/2LG adhesion contrast, and its origin was discussed in terms of the likely water depletion over hydrophobic domains as well as deformation in the contact area between the atomic force microscope tip and 1LG.

15.
Science ; 344(6186): 904-9, 2014 May 23.
Article in English | MEDLINE | ID: mdl-24855269

ABSTRACT

We examined how correlated firing controls axon remodeling, using in vivo time-lapse imaging and electrophysiological analysis of individual retinal ganglion cell (RGC) axons that were visually stimulated either synchronously or asynchronously relative to neighboring inputs in the Xenopus laevis optic tectum. RGCs stimulated out of synchrony rapidly lost the ability to drive tectal postsynaptic partners while their axons grew and added many new branches. In contrast, synchronously activated RGCs produced fewer new branches, but these were more stable. The effects of synchronous activation were prevented by the inhibition of neurotransmitter release and N-methyl-D-aspartate receptor (NMDAR) blockade, which is consistent with a role for synaptic NMDAR activation in the stabilization of axonal branches and suppression of further exploratory branch addition.


Subject(s)
Axons/physiology , Neuronal Plasticity/physiology , Photic Stimulation , Psychological Theory , Receptors, N-Methyl-D-Aspartate/biosynthesis , Retinal Ganglion Cells/physiology , Synaptic Transmission/physiology , Animals , Electrical Synapses/physiology , Receptors, N-Methyl-D-Aspartate/agonists , Receptors, N-Methyl-D-Aspartate/antagonists & inhibitors , Superior Colliculi/physiology , Time-Lapse Imaging , Xenopus laevis
16.
Langmuir ; 30(15): 4243-52, 2014 Apr 22.
Article in English | MEDLINE | ID: mdl-24660961

ABSTRACT

This article presents results and guidelines on the quantitative analysis of size, shape, and stiffness of single sessile oil droplets in air and in water. Atomic force microscopy (AFM) facilitates the analysis of micro- and nanoscale droplets which are of growing importance for agrochemicals, cosmetics, or foodstuffs containing emulsions with nanoscale compartments or droplets. Measurement of droplet shape and stiffness provides information on the contact angle with the support surface as well as the interfacial tension of the liquid-liquid interface. In this study, micro- and nanoscale droplets were imaged both in amplitude modulation (AM) and force mapping modes. The effects of the AM mode set point ratio on the measured droplet shape are discussed, and a modified spherical cap model is suggested to extract the droplet-substrate contact angle. This model was applied to a population of different sized oil droplets imaged in water and led to the finding that the contact angle with the solid support varies with the droplet size. Force mapping was undertaken to measure the droplet stiffness as a function of the droplet size. Smaller droplets were found to be stiffer, in reasonable agreement with the Attard-Miklavcic model [Langmuir 2001, 17, 8217-8223] which describes the deformation of a sessile droplet in the nonwetting regime, i.e., by partial wrapping of the droplet around the probe surface. The model limitations are discussed in terms of the diverging droplet stiffness predicted for droplet radii similar to the probe radius as well as the error propagation associated with the droplet shape function.


Subject(s)
Microscopy, Atomic Force/methods , Oils/chemistry , Emulsions/chemistry , Surface Properties
17.
ACS Appl Mater Interfaces ; 5(4): 1197-205, 2013 Feb.
Article in English | MEDLINE | ID: mdl-23327919

ABSTRACT

Titania nanostructures are of increasing interest for a variety of applications, including photovoltaics, water splitting, and chemical sensing. Because of the photocatalytical properties of TiO2, chemical processes that occur at its surface can be exploited for highly efficient nanodevices. A facile and fast synthesis route has been explored that is free of catalysts or templates. An environmental scanning electron microscopy (ESEM) system was employed to grow titania nanowires (NWs) in a water vapor atmosphere (∼1 mbar) and to monitor the growth in situ. In addition, the growth process was also demonstrated using a simple vacuum chamber. In both processes, a titanium filament was heated via the Joule effect and NWs were found to grow on its surface, as a result of thermal oxidation processes. A variety of nanostructures were observed across the filament, with morphologies changing with the wire temperature from the center to the end points. The longest NWs were obtained for temperatures between ∼730 °C and 810 °C. Typically, they have an approximate thickness of ∼300 nm and lengths of up to a few micrometers. Cross sections prepared by focused-ion-beam milling revealed the presence of a porous layer beneath the NW clusters. This indicates that the growth of NWs is driven by oxidation-induced stresses in the subsurface region of the Ti filament and by enhanced diffusion along grain boundaries. To demonstrate the potential of titania NWs grown via the hot filament method, single NW devices were fabricated and used for conductometric sensing of hydrogen sulfide (H2S) gas. The NW electric resistance was found to decrease in the presence of H2S. Its variation can be explained in terms of the surface depletion model.

18.
Med Image Anal ; 16(4): 849-64, 2012 May.
Article in English | MEDLINE | ID: mdl-22341767

ABSTRACT

A new Collaborative Approach for eNhanced Denoising under Low-light Excitation (CANDLE) is introduced for the processing of 3D laser scanning multiphoton microscopy images. CANDLE is designed to be robust for low signal-to-noise ratio (SNR) conditions typically encountered when imaging deep in scattering biological specimens. Based on an optimized non-local means filter involving the comparison of filtered patches, CANDLE locally adapts the amount of smoothing in order to deal with the noise inhomogeneity inherent to laser scanning fluorescence microscopy images. An extensive validation on synthetic data, images acquired on microspheres and in vivo images is presented. These experiments show that the CANDLE filter obtained competitive results compared to a state-of-the-art method and a locally adaptive optimized non-local means filter, especially under low SNR conditions (PSNR<8dB). Finally, the deeper imaging capabilities enabled by the proposed filter are demonstrated on deep tissue in vivo images of neurons and fine axonal processes in the Xenopus tadpole brain.


Subject(s)
Algorithms , Image Interpretation, Computer-Assisted/methods , Imaging, Three-Dimensional/methods , Lighting/methods , Microscopy, Confocal/methods , Microscopy, Fluorescence, Multiphoton/methods , Image Enhancement/methods , Reproducibility of Results , Sensitivity and Specificity
19.
Antimicrob Agents Chemother ; 56(2): 979-88, 2012 Feb.
Article in English | MEDLINE | ID: mdl-22106225

ABSTRACT

In 1900, Ernst Overton found that the entry of anilin dyes through the cell membranes of living cells depended on the lipophilicity of the dyes. The brain is surrounded by barriers consisting of lipid layers that possess several inward and outward active transport systems. In the absence of meningeal inflammation, the cerebrospinal fluid (CSF) penetration of anti-infectives in humans estimated by the ratio of the area under the concentration-time curve (AUC) in CSF (AUC(CSF)) to that in serum (AUC(CSF)/AUC(S)) correlated positively with the lipid-water partition coefficient at pH 7.0 (log D) (Spearman's rank correlation coefficient r(S) = 0.40; P = 0.01) and negatively with the molecular mass (MM) (r(S) = -0.33; P = 0.04). The ratio of AUC(CSF) to the AUC of the fraction in serum that was not bound (AUC(CSF)/AUC(S,free)) strongly correlated with log D (r(S) = 0.67; P < 0.0001). In the presence of meningeal inflammation, AUC(CSF)/AUC(S) also correlated positively with log D (r(S) = 0.46; P = 0.002) and negatively with the MM (r(S) = -0.37; P = 0.01). The correlation of AUC(CSF)/AUC(S,free) with log D (r(S) = 0.66; P < 0.0001) was as strong as in the absence of meningeal inflammation. Despite these clear correlations, Overton's rule was able to explain only part of the differences in CSF penetration of the individual compounds. The site of CSF withdrawal (lumbar versus ventricular CSF), age of the patients, underlying diseases, active transport, and alterations in the pharmacokinetics by comedications also appeared to strongly influence the CSF penetration of the drugs studied.


Subject(s)
Anti-Infective Agents/cerebrospinal fluid , Anti-Infective Agents/pharmacokinetics , Cerebrospinal Fluid/chemistry , Anti-Infective Agents/blood , Area Under Curve , Biological Transport, Active , Brain/metabolism , Humans , Meninges/metabolism
20.
Philos Trans R Soc Lond B Biol Sci ; 366(1581): 3026-36, 2011 Nov 12.
Article in English | MEDLINE | ID: mdl-21969684

ABSTRACT

The Etruscan shrew, Suncus etruscus, is not only the smallest terrestrial mammal, but also one of the fastest and most tactile hunters described to date. The shrew's skeletal muscle consists entirely of fast-twitch types and lacks slow fibres. Etruscan shrews detect, overwhelm, and kill insect prey in large numbers in darkness. The cricket prey is exquisitely mechanosensitive and fast-moving, and is as big as the shrew itself. Experiments with prey replica show that shape cues are both necessary and sufficient for evoking attacks. Shrew attacks are whisker guided by motion- and size-invariant Gestalt-like prey representations. Shrews often attack their prey prior to any signs of evasive manoeuvres. Shrews whisk at frequencies of approximately 14 Hz and can react with latencies as short as 25-30 ms to prey movement. The speed of attacks suggests that shrews identify and classify prey with a single touch. Large parts of the shrew's brain respond to vibrissal touch, which is represented in at least four cortical areas comprising collectively about a third of the cortical volume. Etruscan shrews can enter a torpid state and reduce their body temperature; we observed that cortical response latencies become two to three times longer when body temperature drops from 36°C to 24°C, suggesting that endothermy contributes to the animal's high-speed sensorimotor performance. We argue that small size, high-speed behaviour and extreme dependence on touch are not coincidental, but reflect an evolutionary strategy, in which the metabolic costs of small body size are outweighed by the advantages of being a short-range high-speed touch and kill predator.


Subject(s)
Muscle Fibers, Fast-Twitch/physiology , Shrews/physiology , Somatosensory Cortex/physiology , Touch/physiology , Vibrissae/physiology , Animals , Predatory Behavior/physiology
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