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2.
Biophys Rep (N Y) ; 2(4): 100082, 2022 Dec 14.
Article in English | MEDLINE | ID: mdl-36425667

ABSTRACT

Neuronal function requires continuous distribution of ion channels and other proteins throughout large cell morphologies. Protein distribution is complicated by immobilization of freely diffusing subunits such as on lipid rafts or in postsynaptic densities. Here, we infer rates of immobilization for the voltage-gated potassium channel Kv4.2. Fluorescence recovery after photobleaching quantifies protein diffusion kinetics, typically reported as a recovery rate and mobile fraction. We show that, implicit in the fluorescence recovery, are rates of particle transfer between mobile and immobile fractions (im/mobilization). We performed photobleaching of fluorescein-tagged ion channel Kv4.2-sGFP2 in over 450 dendrites of rat hippocampal cells. Using mass-action models, we infer rates of Kv4.2-sGFP2 im/mobilization. Using a realistic neuron morphology, we show how these rates shape the speed and profile of subunit distribution. The experimental protocol and model inference introduced here is widely applicable to other cargo and experimental systems.

3.
Cell Rep ; 38(3): 110264, 2022 01 18.
Article in English | MEDLINE | ID: mdl-35045307

ABSTRACT

The subthreshold voltage-gated transient K+ current (IA) carried by pore-forming Kv4.2 subunits regulates the propagation of synaptic input, dendritic excitability, and synaptic plasticity in CA1 pyramidal neuron dendrites of the hippocampus. We report that the Ca2+ channel subunit Cav2.3 regulates IA in this cell type. We initially identified Cav2.3 as a Kv4.2-interacting protein in a proteomic screen and we confirmed Cav2.3-Kv4.2 complex association using multiple techniques. Functionally, Cav2.3 Ca2+-entry increases Kv4.2-mediated whole-cell current due to an increase in Kv4.2 surface expression. Using pharmacology and Cav2.3 knockout mice, we show that Cav2.3 regulates the dendritic gradient of IA. Furthermore, the loss of Cav2.3 function leads to the enhancement of AMPA receptor-mediated synaptic currents and NMDA receptor-mediated spine Ca2+ influx. These results propose that Cav2.3 and Kv4.2 are integral constituents of an ion channel complex that affects synaptic function in the hippocampus.


Subject(s)
Calcium Channels, R-Type/metabolism , Dendrites/metabolism , Hippocampus/metabolism , Shal Potassium Channels/metabolism , Synaptic Transmission/physiology , Animals , HEK293 Cells , Humans , Mice , Mice, Inbred C57BL , Neuronal Plasticity/physiology , Rats , Rats, Sprague-Dawley
4.
J Neurosci ; 39(38): 7453-7464, 2019 09 18.
Article in English | MEDLINE | ID: mdl-31350260

ABSTRACT

Fragile X syndrome (FXS) is an inherited intellectual impairment that results from the loss of fragile X mental retardation protein (FMRP), an mRNA binding protein that regulates mRNA translation at synapses. The absence of FMRP leads to neuronal and circuit-level hyperexcitability that is thought to arise from the aberrant expression and activity of voltage-gated ion channels, although the identification and characterization of these ion channels have been limited. Here, we show that FMRP binds the mRNA of the R-type voltage-gated calcium channel Cav2.3 in mouse brain synaptoneurosomes and represses Cav2.3 translation under basal conditions. Consequently, in hippocampal neurons from male and female FMRP KO mice, we find enhanced Cav2.3 protein expression by western blotting and abnormally large R currents in whole-cell voltage-clamp recordings. In agreement with previous studies showing that FMRP couples Group I metabotropic glutamate receptor (GpI mGluR) signaling to protein translation, we find that GpI mGluR stimulation results in increased Cav2.3 translation and R current in hippocampal neurons which is disrupted in FMRP KO mice. Thus, FMRP serves as a key translational regulator of Cav2.3 expression under basal conditions and in response to GpI mGluR stimulation. Loss of regulated Cav2.3 expression could underlie the neuronal hyperactivity and aberrant calcium spiking in FMRP KO mice and contribute to FXS, potentially serving as a novel target for future therapeutic strategies.SIGNIFICANCE STATEMENT Patients with fragile X syndrome (FXS) exhibit signs of neuronal and circuit hyperexcitability, including anxiety and hyperactive behavior, attention deficit disorder, and seizures. FXS is caused by the loss of fragile X mental retardation protein (FMRP), an mRNA binding protein, and the neuronal hyperexcitability observed in the absence of FMRP likely results from its ability to regulate the expression and activity of voltage-gated ion channels. Here we find that FMRP serves as a key translational regulator of the voltage-gated calcium channel Cav2.3 under basal conditions and following activity. Cav2.3 impacts cellular excitability and calcium signaling, and the alterations in channel translation and expression observed in the absence of FMRP could contribute to the neuronal hyperactivity that underlies FXS.


Subject(s)
Calcium Channels, R-Type/metabolism , Calcium Signaling/physiology , Cation Transport Proteins/metabolism , Fragile X Mental Retardation Protein/metabolism , Fragile X Syndrome/metabolism , Receptors, Metabotropic Glutamate/metabolism , Animals , Disease Models, Animal , Female , Gene Expression Regulation/physiology , Male , Mice , Mice, Inbred C57BL , Mice, Knockout , Neurons/metabolism , Protein Biosynthesis/physiology
5.
Mol Cell Neurosci ; 98: 121-130, 2019 07.
Article in English | MEDLINE | ID: mdl-31212013

ABSTRACT

Kv4.2 voltage-gated K+ channel subunits, the primary source of the somatodendritic A-type K+ current in CA1 pyramidal neurons of the hippocampus, play important roles in regulating dendritic excitability and plasticity. To better study the trafficking and subcellular distribution of Kv4.2, we created and characterized a novel Kv4.2 construct encoding a bungarotoxin binding site in the extracellular S3-S4 linker region of the α-subunit. When expressed, this construct can be visualized in living cells after staining with rhodamine-conjugated bungarotoxin. We validated the utility of this construct by visualizing the spontaneous internalization and insertion of Kv4.2 in HEK 293T cells. We further report that Kv4.2 colocalized with several endosome markers in HEK 293T cells. In addition, Kv4.2 internalization is significantly impaired by mitogen-activated protein kinase (MAPK) inhibitors in transfected primary hippocampal neurons. Therefore, this newly developed BBS-Kv4.2 construct provides a novel and powerful tool for studying surface Kv4.2 channel localization and trafficking.


Subject(s)
Bungarotoxins/pharmacology , Shal Potassium Channels/metabolism , p38 Mitogen-Activated Protein Kinases/metabolism , Animals , Binding Sites , Cells, Cultured , Dipeptidyl-Peptidases and Tripeptidyl-Peptidases/metabolism , HEK293 Cells , Hippocampus/cytology , Humans , Kv Channel-Interacting Proteins/metabolism , Mitogen-Activated Protein Kinase Kinases/metabolism , Neurons/drug effects , Neurons/metabolism , Protein Binding , Protein Kinase Inhibitors/pharmacology , Protein Transport , Rats , Shal Potassium Channels/chemistry , p38 Mitogen-Activated Protein Kinases/antagonists & inhibitors
6.
Mol Biol Cell ; 30(14): 1743-1756, 2019 07 01.
Article in English | MEDLINE | ID: mdl-31091162

ABSTRACT

In neurons, regulation of activity-dependent transcription by the nuclear factor of activated T-cells (NFAT) depends upon Ca2+ influx through voltage-gated L-type calcium channels (LTCC) and NFAT translocation to the nucleus following its dephosphorylation by the Ca2+-dependent phosphatase calcineurin (CaN). CaN is recruited to the channel by A-kinase anchoring protein (AKAP) 79/150, which binds to the LTCC C-terminus via a modified leucine-zipper (LZ) interaction. Here we sought to gain new insights into how LTCCs and signaling to NFAT are regulated by this LZ interaction. RNA interference-mediated knockdown of endogenous AKAP150 and replacement with human AKAP79 lacking its C-terminal LZ domain resulted in loss of depolarization-stimulated NFAT signaling in rat hippocampal neurons. However, the LZ mutation had little impact on the AKAP-LTCC interaction or LTCC function, as measured by Förster resonance energy transfer, Ca2+ imaging, and electrophysiological recordings. AKAP79 and NFAT coimmunoprecipitated when coexpressed in heterologous cells, and the LZ mutation disrupted this association. Critically, measurements of NFAT mobility in neurons employing fluorescence recovery after photobleaching and fluorescence correlation spectroscopy provided further evidence for an AKAP79 LZ interaction with NFAT. These findings suggest that the AKAP79/150 LZ motif functions to recruit NFAT to the LTCC signaling complex to promote its activation by AKAP-anchored calcineurin.


Subject(s)
A Kinase Anchor Proteins/metabolism , Calcium Channels, L-Type/metabolism , Cell Nucleus/metabolism , NFATC Transcription Factors/metabolism , Neurons/metabolism , Signal Transduction , A Kinase Anchor Proteins/chemistry , Amino Acid Motifs , Animals , Calcineurin/metabolism , Calcium Signaling , Cell Line , Cells, Cultured , Cyclic AMP-Dependent Protein Kinases/metabolism , Dendritic Spines/metabolism , Hippocampus/cytology , Models, Biological , Protein Binding , Protein Transport , Rats, Sprague-Dawley , Transcription, Genetic
7.
J Biol Chem ; 294(10): 3683-3695, 2019 03 08.
Article in English | MEDLINE | ID: mdl-30622142

ABSTRACT

The Kv4 family of A-type voltage-gated K+ channels regulates the excitability in hippocampal pyramidal neuron dendrites and are key determinants of dendritic integration, spike timing-dependent plasticity, long-term potentiation, and learning. Kv4.2 channel expression is down-regulated following hippocampal seizures and in epilepsy, suggesting A-type currents as therapeutic targets. In addition to pore-forming Kv4 subunits, modulatory auxiliary subunits called K+ channel-interacting proteins (KChIPs) modulate Kv4 expression and activity and are required to recapitulate native hippocampal A-type currents in heterologous expression systems. KChIP mRNAs contain multiple start sites and alternative exons that generate considerable N-terminal variation and functional diversity in shaping Kv4 currents. As members of the EF-hand domain-containing neuronal Ca2+ sensor protein family, KChIP auxiliary proteins may convey Ca2+ sensitivity upon Kv4 channels; however, to what degree intracellular Ca2+ regulates KChIP-Kv4.2 complexes is unclear. To answer this question, we expressed KChIP2 with Kv4.2 in HEK293T cells, and, with whole-cell patch-clamp electrophysiology, measured an ∼1.5-fold increase in Kv4.2 current density in the presence of elevated intracellular Ca2+ Intriguingly, the Ca2+ regulation of Kv4 current was specific to KChIP2b and KChIP2c splice isoforms that lack a putative polybasic domain that is present in longer KChIP2a1 and KChIP2a isoforms. Site-directed acidification of the basic residues within the polybasic motif of KChIP2a1 rescued Ca2+-mediated regulation of Kv4 current density. These results support divergent Ca2+ regulation of Kv4 channels mediated by alternative splicing of KChIP2 isoforms. They suggest that distinct KChIP-Kv4 interactions may differentially control excitability and function of hippocampal dendrites.


Subject(s)
Alternative Splicing , Calcium/metabolism , Kv Channel-Interacting Proteins/chemistry , Kv Channel-Interacting Proteins/metabolism , Shal Potassium Channels/metabolism , Amino Acid Motifs , Amino Acid Sequence , Dendrites/metabolism , Electrophysiological Phenomena , HEK293 Cells , Hippocampus/cytology , Humans , Hydrophobic and Hydrophilic Interactions , Intracellular Space/metabolism , Kinetics , Kv Channel-Interacting Proteins/genetics , Protein Domains , Protein Isoforms/chemistry , Protein Isoforms/genetics , Protein Isoforms/metabolism
8.
Front Cell Neurosci ; 12: 84, 2018.
Article in English | MEDLINE | ID: mdl-29651237

ABSTRACT

DPP6 is well known as an auxiliary subunit of Kv4-containing, A-type K+ channels which regulate dendritic excitability in hippocampal CA1 pyramidal neurons. We have recently reported, however, a novel role for DPP6 in regulating dendritic filopodia formation and stability, affecting synaptic development and function. These results are notable considering recent clinical findings associating DPP6 with neurodevelopmental and intellectual disorders. Here we assessed the behavioral consequences of DPP6 loss. We found that DPP6 knockout (DPP6-KO) mice are impaired in hippocampus-dependent learning and memory. Results from the Morris water maze and T-maze tasks showed that DPP6-KO mice exhibit slower learning and reduced memory performance. DPP6 mouse brain weight is reduced throughout development compared with WT, and in vitro imaging results indicated that DPP6 loss affects synaptic structure and motility. Taken together, these results show impaired synaptic development along with spatial learning and memory deficiencies in DPP6-KO mice.

9.
Cell Rep ; 7(5): 1577-1588, 2014 Jun 12.
Article in English | MEDLINE | ID: mdl-24835999

ABSTRACT

L-type voltage-gated Ca2+ channels (LTCC) couple neuronal excitation to gene transcription. LTCC activity is elevated by the cyclic AMP (cAMP)-dependent protein kinase (PKA) and depressed by the Ca2+-dependent phosphatase calcineurin (CaN), and both enzymes are localized to the channel by A-kinase anchoring protein 79/150 (AKAP79/150). AKAP79/150 anchoring of CaN also promotes LTCC activation of transcription through dephosphorylation of the nuclear factor of activated T cells (NFAT). We report here that the basal activity of AKAP79/150-anchored PKA maintains neuronal LTCC coupling to CaN-NFAT signaling by preserving LTCC phosphorylation in opposition to anchored CaN. Genetic disruption of AKAP-PKA anchoring promoted redistribution of the kinase out of postsynaptic dendritic spines, profound decreases in LTCC phosphorylation and Ca2+ influx, and impaired NFAT movement to the nucleus and activation of transcription. Thus, LTCC-NFAT transcriptional signaling in neurons requires precise organization and balancing of PKA and CaN activities in the channel nanoenvironment, which is only made possible by AKAP79/150 scaffolding.


Subject(s)
A Kinase Anchor Proteins/metabolism , Calcium Channels, L-Type/metabolism , Cyclic AMP-Dependent Protein Kinases/metabolism , Dendritic Spines/metabolism , NFATC Transcription Factors/metabolism , Signal Transduction , Transcriptional Activation , Animals , Calcineurin/metabolism , Calcium Channels, L-Type/genetics , Cells, Cultured , Dendritic Spines/physiology , HEK293 Cells , Humans , Mice , Protein Binding , Rats
10.
Proc Natl Acad Sci U S A ; 109(23): E1489-98, 2012 Jun 05.
Article in English | MEDLINE | ID: mdl-22573815

ABSTRACT

The melanocortin-3 receptor-deficient (MC3-R(-/-)) mouse exhibits mild obesity without hyperphagia or hypometabolism. MC3-R deletion is reported to increase adiposity, reduce lean mass and white adipose tissue inflammation, and increase sensitivity to salt-induced hypertension. We show here that the MC3-R(-/-) mouse exhibits defective fasting-induced white adipose tissue lipolysis, fasting-induced liver triglyceride accumulation, fasting-induced refeeding, and fasting-induced regulation of the adipostatic and hypothalamic-adrenal-pituitary axes. Close examination of the hypothalamic-pituitary-adrenal axis showed that MC3-R(-/-) mice exhibit elevated nadir corticosterone as well as a blunted fasting-induced activation of the axis. The previously described phenotypes of this animal and the reduced bone density reported here parallel those of Cushing syndrome. Thus, MC3-R is required for communicating nutritional status to both central and peripheral tissues involved in nutrient partitioning, and this defect explains much of the metabolic phenotype in the model.


Subject(s)
Energy Metabolism/physiology , Fasting/physiology , Hypothalamo-Hypophyseal System/physiology , Pituitary-Adrenal System/physiology , Receptor, Melanocortin, Type 3/physiology , Absorptiometry, Photon , Adipose Tissue, White/metabolism , Adiposity/genetics , Adrenal Glands/cytology , Analysis of Variance , Animals , Biomechanical Phenomena , Blotting, Western , Body Composition/physiology , Corticosterone/metabolism , Immunohistochemistry , In Situ Hybridization , Lipolysis/physiology , Liver/metabolism , Male , Mice , Mice, Knockout , Real-Time Polymerase Chain Reaction , Receptor, Melanocortin, Type 3/deficiency , Triglycerides/metabolism
11.
Nat Struct Mol Biol ; 19(3): 337-45, 2012 Feb 19.
Article in English | MEDLINE | ID: mdl-22343722

ABSTRACT

In hippocampal neurons, the scaffold protein AKAP79 recruits the phosphatase calcineurin to L-type Ca(2+) channels and couples Ca(2+) influx to activation of calcineurin and of its substrate, the transcription factor NFAT. Here we show that an IAIIIT anchoring site in human AKAP79 binds the same surface of calcineurin as the PxIxIT recognition peptide of NFAT, albeit more strongly. A modest decrease in calcineurin-AKAP affinity due to an altered anchoring sequence is compatible with NFAT activation, whereas a further decrease impairs activation. Counterintuitively, increasing calcineurin-AKAP affinity increases recruitment of calcineurin to the scaffold but impairs NFAT activation; this is probably due to both slower release of active calcineurin from the scaffold and sequestration of active calcineurin by 'decoy' AKAP sites. We propose that calcineurin-AKAP79 scaffolding promotes NFAT signaling by balancing strong recruitment of calcineurin with its efficient release to communicate with NFAT.


Subject(s)
A Kinase Anchor Proteins/metabolism , Calcineurin/metabolism , Calcium Signaling , A Kinase Anchor Proteins/genetics , Amino Acid Sequence , Crystallography, X-Ray , Humans , Models, Molecular , NFATC Transcription Factors/metabolism , Protein Binding , Protein Interaction Domains and Motifs , Protein Structure, Quaternary
12.
Endocrinology ; 148(12): 6186-94, 2007 Dec.
Article in English | MEDLINE | ID: mdl-17901224

ABSTRACT

Metabolic syndrome, a complex of highly debilitating disorders that includes insulin resistance, hypertension, and dyslipidemia, is associated with the development of obesity in humans as well as rodent models. White adipose tissue (WAT) inflammation, caused in part by macrophage infiltration, and fat accumulation in the liver are both linked to development of the metabolic syndrome. Despite large increases in body fat, melanocortin 3-receptor (MC3-R)-deficient mice do not get fatty liver disease or severe insulin resistance. This is in contrast to obese melanocortin 4-receptor (MC4-R)-deficient mice and diet-induced obese (DIO) mice, which show increased adiposity, fatty liver disease, and insulin resistance. We hypothesized that defects in the inflammatory response to obesity may underlie the protection from metabolic syndrome seen in MC3-R null mice. MC4-R mice fed a chow diet show increased proinflammatory gene expression and macrophage infiltration in WAT, as do wild-type (WT) DIO mice. In contrast, MC3-R-deficient mice fed a normal chow diet show neither of these inflammatory changes, despite their elevated adiposity and a comparable degree of adipocyte hypertrophy to the MC4-R null and DIO mice. Furthermore, even when challenged with high-fat chow for 4 wk, a period of time shown to induce an inflammatory response in WAT of WT animals, MC3-R nulls showed an attenuated up-regulation in both monocyte chemoattractant protein-1 (MCP-1) and TNFalpha mRNA in WAT compared with WT high-fat-fed animals.


Subject(s)
Adipose Tissue, White/metabolism , Inflammation/metabolism , Obesity/complications , Receptor, Melanocortin, Type 3/physiology , Signal Transduction/physiology , Adipose Tissue, White/pathology , Adiposity/drug effects , Adiposity/genetics , Animals , Chemokine CCL2/genetics , Dietary Fats , Enzyme-Linked Immunosorbent Assay , Immunohistochemistry , Inflammation/etiology , Inflammation/genetics , Insulin Resistance , Leptin/blood , Liver/drug effects , Liver/metabolism , Liver/pathology , Male , Mice , Mice, Inbred C57BL , Mice, Knockout , Obesity/blood , Obesity/chemically induced , RNA, Messenger/genetics , RNA, Messenger/metabolism , Receptor, Melanocortin, Type 3/genetics , Reverse Transcriptase Polymerase Chain Reaction , Signal Transduction/genetics , Triglycerides/metabolism , Tumor Necrosis Factor-alpha/genetics
13.
Mol Pharmacol ; 72(4): 885-96, 2007 Oct.
Article in English | MEDLINE | ID: mdl-17622577

ABSTRACT

Hypothalamic proopiomelanocortin (POMC) neurons play a critical role in the regulation of energy balance, and there is a convergence of critical synaptic input including GABA and serotonin on POMC neurons to regulate their output. We found previously that 17beta-estradiol (E(2)) reduced the potency of the GABA(B) receptor agonist baclofen to activate G protein-coupled inwardly rectifying potassium (GIRK) channels in hypothalamic POMC neurons through a membrane estrogen receptor (mER) via a Galpha(q) phospholipase C (PLC)-protein kinase Cdelta-protein kinase A pathway. We hypothesized that the mER and neurotransmitter receptor signaling pathways converge to control energy homeostasis. Because 5-HT(2C) receptors mediate many of the effects of serotonin in POMC neurons, we elucidated the common signaling pathways of E(2) and 5-HT in guinea pigs using single-cell reverse transcription-polymerase chain reaction (RT-PCR), real time RT-PCR, and whole-cell patch recording. Both 5-hydroxytryptamine(2C) (5-HT(2C)) and 5-HT(2A) receptors were coexpressed in POMC neurons. The 5-HT(2A/C) agonist (+/-)-1-(2,5-dimethoxy-4-iodophenyl)-2-aminopropane (DOI) desensitized the GABA(B) response in a dose-dependent manner, which was antagonized by the selective 5-HT(2C) receptor antagonists 8-[5-(2,4-dimethoxy-5-(4-trifluoromethylphenylsulphonamido) phenyl-5-oxopentyl]1,3,8-triazaspiro[4.5] decane-2,4-dione hydrochloride (RS102221) and 1,2,3, 4,10,14b-hexahydro-2-methyldibenzo [c,f]pyrazino[1,2-a]-azepine hydrochloride (ORG 3363). The 5-HT(2C) receptor was Galpha(q)-coupled to PLC activation and hydrolysis of plasma membrane phosphatidylinositol bisphosphate to directly inhibit GIRK channel activity. Coapplication of the two agonists at their EC(50) concentrations (DOI, 20 muM, and E(2), 50 nM) produced additive effects. Although there was a significant gender difference in the effects of E(2) on baclofen responses, there was no gender difference in 5-HT(2C) receptor-mediated effects. Finally, both DOI and estrogen (intracerebroventricular) inhibited feeding in ovariectomized female mice. Therefore, the Galpha(q) signaling pathways of the mER and 5-HT(2C) receptors may converge to enhance synaptic efficacy in brain circuits that are critical for maintaining homeostatic functions.


Subject(s)
Energy Metabolism , Homeostasis , Hypothalamus/metabolism , Neurons/metabolism , Pro-Opiomelanocortin/metabolism , Receptor, Serotonin, 5-HT2C/metabolism , Signal Transduction , Amino Acid Sequence , Animals , Base Sequence , DNA Primers , Estradiol/pharmacology , Female , Guinea Pigs , Hypothalamus/cytology , Hypothalamus/drug effects , Immunohistochemistry , Male , Mice , Mice, Inbred C57BL , Patch-Clamp Techniques , Protein Kinase C-delta/metabolism , RNA, Messenger/genetics , Receptor, Serotonin, 5-HT2C/genetics , Reverse Transcriptase Polymerase Chain Reaction , Type C Phospholipases/metabolism
14.
Endocrinology ; 148(4): 1550-60, 2007 Apr.
Article in English | MEDLINE | ID: mdl-17194736

ABSTRACT

The central melanocortin 4 receptor (MC4R) plays a critical role in energy homeostasis, although little is known regarding its role in the regulation of adaptive thermogenesis of brown adipose tissue (BAT). Here we show using retrograde transsynaptic tracing with attenuated pseudorabies virus coupled with dual-label immunohistochemistry that specific subsets of MC4R-expressing neurons in multiple nuclei of the central nervous system known to regulate sympathetic outflow polysynaptically connect with interscapular BAT (IBAT). Furthermore, we show that MC4R-/- and agouti-related peptide-treated mice are defective in HF diet-induced up-regulation of uncoupling protein 1 in IBAT. Additionally, MC4R-/- mice exposed to 4 C for 4 h exhibit a defect in up-regulation of uncoupling protein 1 levels in IBAT. Our results provide a neuroanatomic substrate for MC4R regulating sympathetically mediated IBAT thermogenesis and demonstrate that the MC4R is critically required for acute high-fat- and cold-induced IBAT thermogenesis.


Subject(s)
Acclimatization/physiology , Adipose Tissue, Brown/physiology , Receptor, Melanocortin, Type 4/physiology , Thermogenesis/physiology , Adipose Tissue, Brown/drug effects , Adipose Tissue, Brown/metabolism , Agouti-Related Protein , Animals , Central Nervous System/chemistry , Cold Temperature , Diet, Atherogenic , Herpesvirus 1, Suid , Intercellular Signaling Peptides and Proteins/pharmacology , Ion Channels/metabolism , Male , Melanocortins/metabolism , Melanocortins/physiology , Mice , Mice, Inbred C57BL , Mice, Knockout , Mitochondrial Proteins/metabolism , Models, Biological , Receptor, Melanocortin, Type 4/genetics , Receptor, Melanocortin, Type 4/metabolism , Uncoupling Protein 1
15.
Nature ; 422(6934): 893-7, 2003 Apr 24.
Article in English | MEDLINE | ID: mdl-12712205

ABSTRACT

Cytosine methylation is common, but not ubiquitous, in eukaryotes. Mammals and the fungus Neurospora crassa have about 2-3% of cytosines methylated. In mammals, methylation is almost exclusively in the under-represented CpG dinucleotides, and most CpGs are methylated whereas in Neurospora, methylation is not preferentially in CpG dinucleotides and the bulk of the genome is unmethylated. DNA methylation is essential in mammals but is dispensable in Neurospora, making this simple eukaryote a favoured organism in which to study methylation. Recent studies indicate that DNA methylation in Neurospora depends on one DNA methyltransferase, DIM-2 (ref. 6), directed by a histone H3 methyltransferase, DIM-5 (ref. 7), but little is known about its cellular and evolutionary functions. As only four methylated sequences have been reported previously in N. crassa, we used methyl-binding-domain agarose chromatography to isolate the methylated component of the genome. DNA sequence analysis shows that the methylated component of the genome consists almost exclusively of relics of transposons that were subject to repeat-induced point mutation--a genome defence system that mutates duplicated sequences.


Subject(s)
DNA Methylation , DNA Transposable Elements/genetics , DNA, Fungal/metabolism , Genome, Fungal , Neurospora crassa/genetics , Chromatography, Affinity , Cloning, Molecular , Cytosine/metabolism , DNA, Fungal/genetics , Genes, Duplicate/genetics , Molecular Sequence Data , Mutagenesis/genetics , Point Mutation/genetics , Sequence Homology, Nucleic Acid
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