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1.
Eur J Clin Microbiol Infect Dis ; 31(9): 2257-62, 2012 Sep.
Article in English | MEDLINE | ID: mdl-22371295

ABSTRACT

We evaluated the use of matrix-assisted laser desorption ionization-time of flight mass spectrometry (MALDI-TOF) for the rapid identification of anaerobic bacteria that had been isolated from clinical specimens and previously identified by 16s rRNA sequencing. The Bruker Microflex MALDI-TOF instrument with the Biotyper Software was used. We tested 152 isolates of anaerobic bacteria from 24 different genera and 75 different species. A total of 125 isolates (82%) had Biotyper software scores greater than 2.0 and the correct identification to genus and species was made by MALDI-TOF for 120 (79%) of isolates. Of the 12 isolates with a score between 1.8 and 2.0, 2 (17%) organisms were incorrectly identified by MALDI-TOF. Only 15 (10%) isolates had a score less than 1.8 and MALDI-TOF gave the wrong genus and species for four isolates, the correct genus for two isolates, and the correct genus and species for nine isolates. Therefore, we found the Bruker MALDI-TOF MicroFlex LT with an expanded database and the use of bacteria extracts rather than whole organisms correctly identified 130 of 152 (86%) isolates to genus and species when the cut-off for an acceptable identification was a spectrum score ≥1.8.


Subject(s)
Bacteria, Anaerobic/chemistry , Bacteria, Anaerobic/classification , Bacterial Infections/diagnosis , Bacteriological Techniques/methods , Spectrometry, Mass, Matrix-Assisted Laser Desorption-Ionization/methods , Bacteria, Anaerobic/isolation & purification , Humans , Sensitivity and Specificity
2.
Clin Microbiol Infect ; 16(11): 1626-30, 2010 Nov.
Article in English | MEDLINE | ID: mdl-20825435

ABSTRACT

Matrix-assisted laser desorption ionization time-of-flight (MALDI-TOF) mass spectrometry (MS) is a powerful tool for the species and subspecies classification of a broad spectrum of bacteria, including Gram-positive bacteria such as Staphylococcus, Streptococcus and Listeria, and Gram-negative bacteria such as Neisseria, Salmonella, Aeromonas, Campylobacter and Helicobacter. MALDI-TOF MS has also been used for the rapid identification and typing of potential bioterrorism agents, including Coxiella burnetii, Francisella tularensis and Bacillus anthracis.


Subject(s)
Bacteria/classification , Bacterial Proteins/analysis , Bacterial Typing Techniques , Spectrometry, Mass, Matrix-Assisted Laser Desorption-Ionization/methods , Bacterial Typing Techniques/instrumentation , Bacterial Typing Techniques/methods , Bioterrorism
3.
Eur J Clin Microbiol Infect Dis ; 27(9): 821-30, 2008 Sep.
Article in English | MEDLINE | ID: mdl-18421488

ABSTRACT

Pyrosequencing was used to identify 133 isolates of clinically relevant non-dematiaceous yeasts. These included 97 ATCC strains (42 type strains), seven UAMH strains, and 29 clinical isolates. Isolates belonged to the following genera: Candida (18 species), Trichosporon (10), Cryptococcus (7), Malassezia (3), Rhodotorula (2), Geotrichum (1), Blastoschizomyces (1), and Kodamaea (1). Amplicons of a hyper-variable ITS region were obtained and analyzed using Pyrosequencing technology. The data were evaluated by a BLAST search against the GenBank database and correlated with data obtained by conventional cycle sequencing of the ITS1-5.8S-ITS2 region. Cycle sequencing identified 78.9% of the isolates to the species level. Pyrosequencing technology identified 69.1%. In 90.1% of all of the strains tested, the identification results of both sequencing methods were identical. Most Candida isolates can be identified to the species level by Pyrosequencing. Trichosporon species and some Cryptococcus species cannot be differentiated at the species level. Pyrosequencing can be used for the reliable identification of most commonly isolated non-dematiaceous yeasts, with a reduction of cost per identification compared to conventional sequencing.


Subject(s)
DNA, Fungal/classification , DNA, Fungal/genetics , Sequence Analysis, DNA/methods , Yeasts/genetics , Candida/genetics , Candida/isolation & purification , Cryptococcus/classification , Cryptococcus/genetics , Cryptococcus/isolation & purification , DNA, Intergenic/genetics , Polymerase Chain Reaction/methods , Trichosporon/classification , Trichosporon/genetics , Trichosporon/isolation & purification , Yeasts/isolation & purification
5.
J Clin Microbiol ; 45(3): 707-14, 2007 Mar.
Article in English | MEDLINE | ID: mdl-17192418

ABSTRACT

As part of a large, ongoing study of invasive infections in pediatric patients in Bamako, Mali, 106 cases of invasive pneumococcal disease were identified from June 2002 to July 2003 (J. D. Campbell et al., Pediatr. Infect. Dis. J. 23:642-649, 2004). Of the 12 serotypes present, the majority of isolates were not contained in PCV7 (the 7-valent pneumococcal conjugate vaccine), including 1 isolate that was serotype 1, 12 isolates that were serotype 2, 58 isolates that were serotype 5, 7 isolates that were serotype 7F, and 1 isolate that was serotype 12F. To determine whether clonal dissemination of the predominant serotypes had taken place, genotyping was performed on 100 S. pneumoniae isolates by using two methods: pulsed-field gel electrophoresis (PFGE) of SmaI-digested genomic DNA, and the Bacterial Barcodes repetitive-element PCR (rep-PCR) method. Criteria for delineating rep-PCR genotypes were established such that isolates of different serotypes were generally not grouped together. The two methods were equally discriminatory within a given pneumococcal serotype. PFGE separated the isolates into 15 genotypes and 7 subtypes; rep-PCR separated isolates into 15 genotypes and 6 subtypes. Using either method, isolates within serotypes 2, 5, and 7 formed three large, separate clusters containing 1 genotype each. Both methods further distinguished related subtypes within serotypes 2 and 5. Interestingly, one of the PFGE subtypes of serotype 5 is indistinguishable from the Columbia(5)-19 clone circulating in Latin America since 1994. The data support that serotypes 2 and 5 were likely to be the result of dissemination of particular clones, some of which are responsible for invasive disease over a broad population range.


Subject(s)
Bacterial Typing Techniques , Electrophoresis, Gel, Pulsed-Field/methods , Polymerase Chain Reaction/methods , Repetitive Sequences, Nucleic Acid/genetics , Streptococcus pneumoniae/classification , Streptococcus pneumoniae/genetics , Adolescent , Automation , Child , Deoxyribonucleases, Type II Site-Specific/metabolism , Genotype , Humans , Mali/epidemiology , Pneumococcal Infections/epidemiology , Pneumococcal Infections/microbiology , Serotyping
6.
Cytotherapy ; 6(3): 183-95, 2004.
Article in English | MEDLINE | ID: mdl-15203975

ABSTRACT

BACKGROUND: Although widely used, commercially available automated culture methods are not US Food and Drug Administration-approved for sterility testing of cell-therapy products. For cell-therapy products regulated under Section 351 of the Public Health Service Act, sterility testing must be performed by the methods described in 21 CFR 610.12 and USP <71> (CFR/USP method), or by methods demonstrated to be equivalent. METHODS: Two automated methods, BacT/Alert (BTA; bioMerieux) and Bactec (Becton Dickinson), were compared with the CFR/USP method. Representative mononuclear cell (MNC) products were formulated using six different product media. MNC product aliquots containing 10-50 x 10(6) cells in a 0.5 mL volume were seeded with organisms, and cultured for 14 days in aerobic and anaerobic bottles of each system. Ten different organisms at target concentrations of 10 and 50 colony-forming units (CFU) per bottle were tested. RESULTS: Positives were detected in a mean (range) of 72% (7-100%) of cultures for CFR/USP, 82% (0-100%) for BTA, and 93% (57-100%) for Bactec. For nine of the 10 organisms tested, overall detection rates for BTA and Bactec were equivalent to or higher than CFR/USP. Of the six product media tested, detection of organisms was impaired only by the medium containing multiple antibiotics: this occurred in all three systems. Both BTA and Bactec had shorter times to detection than the CFR/USP method, with overall means (ranges) of 87 (24-264) h for CFR/USP, 24 (12-54) h for BTA, and 33 (12-80) h for Bactec. Detection occurred consistently within 7 days for both BTA and Bactec, but not for CFR/USP. DISCUSSION: Both BTA and Bactec are superior to the CFR/USP method for overall detection and time to detection of organisms in MNC products suspended in commonly used media. These data support general use of either BTA or Bactec for sterility testing of a variety of cell-therapy products, and suggest that a 7-day culture period is sufficient to detect clinically relevant organisms. These results confirm the need for bacteriostasis and fungistasis testing of antibiotic-containing products, even when antibiotic-binding substances are used.


Subject(s)
Automation/methods , Cell Culture Techniques/methods , Cell- and Tissue-Based Therapy/methods , Drug Contamination/prevention & control , Sterilization/methods , Anti-Bacterial Agents , Automation/instrumentation , Automation/standards , Bacteria, Aerobic/drug effects , Bacteria, Aerobic/growth & development , Bacteria, Anaerobic/drug effects , Bacteria, Anaerobic/growth & development , Cell Culture Techniques/instrumentation , Cell Culture Techniques/standards , Cell- and Tissue-Based Therapy/instrumentation , Cell- and Tissue-Based Therapy/standards , Cells, Cultured , Colony Count, Microbial , Culture Media/pharmacology , Guideline Adherence , Humans , Laboratories/standards , Leukocytes, Mononuclear/physiology , Sterilization/instrumentation , Sterilization/standards , Time Factors
7.
Eur J Clin Microbiol Infect Dis ; 22(10): 628-31, 2003 Oct.
Article in English | MEDLINE | ID: mdl-14520536

ABSTRACT

The sequence of the 16S rRNA gene has been used extensively for phylogenetic classification, identification, and genotypic typing of bacteria. Identification of bacterial isolates by 16S rRNA gene sequencing, though generally performed in reference laboratories, has been recently introduced for routine use in clinical laboratories to identify isolates that cannot be identified by conventional methods. Described in this report is the use of 16S rRNA gene sequencing to identify uncommon bacteria, or bacteria with unusual phenotypic properties, with four brief case presentations to illustrate its clinical application. The feasibility, usefulness and limitations of performing this approach in the clinical laboratory are also discussed.


Subject(s)
Bacteria/classification , RNA, Ribosomal, 16S/analysis , Sequence Analysis, DNA , Bacteria/genetics , Bacterial Typing Techniques , Blood/microbiology , Cerebrospinal Fluid/microbiology , Feasibility Studies , Feces/microbiology , Genes, rRNA/genetics , Humans , RNA, Ribosomal, 16S/genetics , Sensitivity and Specificity , Specimen Handling , Thailand , Wounds and Injuries/microbiology
8.
Ultrasonics ; 40(1-8): 771-6, 2002 May.
Article in English | MEDLINE | ID: mdl-12160043

ABSTRACT

Quantitative time-of-flight analysis of laser-generated shear waves and longitudinal-shear mode-converted waves has demonstrated an effective method for non-contact monitoring of the thickness of metal plates. Q-switched Nd:YAG laser pulses with energies of approximately 18 mJ, delivered to the material surface via an optical fibre and focused to a line source by a cylindrical lens, excited surface waves, longitudinal and shear waves. Bulk waves propagated through the plate to be reflected from the far surface. Returning waves were detected using an electro-magnetic acoustic transducer (EMAT) sensitive to in-plane motion. The compilation of B-scans generated as the sensor head was moved along the material's surface to produce a 2-D intensity profile made any changes in the plate thickness easy to visualise. The longitudinal-shear (L-S) and shear-longitudinal (S-L) mode-converted waves provided a method of simultaneously monitoring two different points on the far surface enabling any changes in the material thickness to be clearly identified. This method was used to determine the thickness of aluminium samples ranging in from 5 to 70 mm.

9.
J Clin Microbiol ; 38(6): 2416-8, 2000 Jun.
Article in English | MEDLINE | ID: mdl-10835020

ABSTRACT

This study demonstrates that significant reproducibility problems can occur during routine use of the Abbott Laboratories LCx assay for Chlamydia trachomatis and Neisseria gonorrhoeae. These problems can go undetected by the quality control procedures outlined in the manufacturer's package insert. We outline here procedures for detecting and preventing contamination and reproducibility problems.


Subject(s)
Chlamydia Infections/diagnosis , Chlamydia trachomatis/isolation & purification , Gonorrhea/diagnosis , Nucleic Acid Amplification Techniques , Reagent Kits, Diagnostic , Humans , Reproducibility of Results
10.
Am J Med ; 107(2): 119-25, 1999 Aug.
Article in English | MEDLINE | ID: mdl-10460041

ABSTRACT

BACKGROUND: Contamination of blood cultures creates problems in their interpretation and unneeded resource utilization. Because skin flora comprise the major group of contaminant species, more effective skin disinfection at the venipuncture site could reduce contamination. SUBJECTS AND METHODS: We performed a randomized trial in adult inpatients at a tertiary care teaching hospital. Antecubital venipuncture sites were randomly disinfected with povidone-iodine or iodine tincture, and blood cultures (two bottles, 10 mL of blood) were drawn by professional phlebotomists. Scoring of contaminant species was restricted to skin flora. Hospital resource utilization was compared among patients with contaminated blood cultures and those with sterile blood cultures. RESULTS: Of the 3,851 blood cultures collected during the study, 120 (3.1%) were contaminated with skin flora. The contamination rate for blood cultures collected after povidone-iodine was 3.8% (74 of 1,947), compared with a rate of 2.4% (46 of 1,904, P = 0.01) after iodine tincture. The difference in mean total hospital costs for patients with contaminated blood cultures and those with sterile blood cultures was $4,100 (95% confidence interval: $740 to $7,400, P = 0.02). CONCLUSIONS: Iodine tincture is superior to povidone-iodine for venipuncture site antisepsis before blood culture sampling. Because of the high costs associated with contaminated blood cultures, hospitals should consider switching from povidone-iodine to iodine tincture. Reduction of the contamination rate may improve the quality of patient care and reduce hospital costs.


Subject(s)
Anti-Infective Agents, Local/therapeutic use , Blood/microbiology , Iodine/therapeutic use , Phlebotomy/methods , Povidone/therapeutic use , Skin/microbiology , Adult , Drug Therapy, Combination , Female , Humans , Male , Treatment Outcome
11.
Cardiovasc Surg ; 7(1): 16-26, 1999 Jan.
Article in English | MEDLINE | ID: mdl-10073755

ABSTRACT

Elastolytic matrix metalloproteinases play a central role in the development of chronic atherosclerotic aortic aneurysms, but mycotic aortic aneurysms are a distinct and unusual form of aneurysm disease caused by bacterial infection. Mycotic aortic aneurysms follow a more rapid and unpredictable course than chronic aneurysm disease and they exhibit a predilection for the suprarenal aorta, further implying unique pathophysiologic mechanisms. The purpose of this study was to examine the nature and source of elastin-degrading enzymes in mycotic aortic aneurysm. Bacterial isolates and aortic tissues were obtained from four consecutive patients undergoing surgical repair of suprarenal mycotic aortic aneurysm. Using an in vitro 3H-labeled elastin degradation assay, elastin-degrading enzyme activity was only observed in the bacteria-conditioned medium from an isolate of Pseudomonas aeruginosa. Elastin-degrading enzyme activity in the aortic tissue homogenate of this patient was abolished by the serine protease inhibitor, phenylmethylsulfonyl fluoride, but it was not suppressed by the metalloproteinase inhibitor, ethylenediamine tetraacetic acid (EDTA). In contrast, elastin-degrading enzyme activity in the bacterial-conditioned medium was decreased by about half by both phenylmethylsulfonyl fluoride and EDTA. Elastin substrate zymography revealed two phenylmethylsulfonyl fluoride-inhibitable elastin-degrading enzyme activities in the aortic tissue homogenate that corresponded to human neutrophil elastase (approximately 30 kDa) and its stable complex with alpha 1-proteinase inhibitor (approximately 80 kDa), but no activity attributable to Pseudomonas elastase, a 33-kDa metal-dependent enzyme. Human neutrophil elastase was readily detected throughout mycotic aortic aneurysm tissues by immunohistochemistry, but elastolytic metalloproteinases were only occasionally observed. The results of this study suggest that the elastin-degrading enzyme produced in mycotic aortic aneurysm are largely serine proteases of host neutrophil origin, rather than elastases produced by the infecting microorganisms or the macrophage-derived metalloproteinases typically observed in atherosclerotic aneurysm disease. Further studies will be needed to extend these findings to a larger number of patients with mycotic aortic aneurysm and those caused by additional microorganisms.


Subject(s)
Aneurysm, Infected/enzymology , Aortic Aneurysm, Abdominal/enzymology , Elastin/metabolism , Aged , Aged, 80 and over , Aneurysm, Infected/pathology , Aneurysm, Infected/physiopathology , Aortic Aneurysm, Abdominal/pathology , Aortic Aneurysm, Abdominal/physiopathology , Female , Humans , Immunohistochemistry , Inflammation , Leukocyte Elastase/metabolism , Male , Metalloendopeptidases/metabolism , Serine Endopeptidases/metabolism
12.
J Clin Microbiol ; 36(10): 2996-3001, 1998 Oct.
Article in English | MEDLINE | ID: mdl-9738056

ABSTRACT

Modified MicroScan gram-positive MIC no. 8 panels (PM-8) were analyzed for their improved ability to detect vancomycin resistance (VR) and high-level aminoglycoside resistance (HLAR) in enterococci. A validation study design that utilized selected challenge strains, recent clinical isolates, and reproducibility experiments in a multicenter format was selected. Three independent medical centers compared the commercial panels to reference broth microdilution panels (RBM) and Synergy Quad Agar (QA). Resistance was verified by demonstration of VR and HLAR genes by PCR tests. The study was conducted in three phases. (i) In the challenge phase (CP), two well-characterized sets of enterococci were obtained from the Centers for Disease Control and Prevention; one set contained 50 isolates for VR testing and one contained 48 isolates for HLAR testing. In addition, a set of 47 well-characterized isolates representing diverse geographic areas, obtained from earlier national surveillance studies, was tested at the University of Iowa College of Medicine (UICM). (ii) In the efficacy phase (EP), each laboratory tested 50 recent, unique clinical isolates by all methods. (iii) In the reproducibility Phase (RP), each laboratory tested the same 10 strains by all methods in triplicate on three separate days. All isolates from the EP were sent to the UICM for molecular characterization of vanA, -B, -C1, -C2-3, and HLAR genes. In the CP, the ranking of test methods by error rates (in parentheses; very major and major errors combined, versus PCR results) were as follows: for high-level streptomycin resistance (HLSR), QA (12.0%) > PM-8 (5.2%) > RBM (1.6%); for high-level gentamicin resistance (HLGR), RBM (3.7%) > PM-8 (3.1%) > QA (2.6%); and for VR, RBM = QA (3.0%) > PM-8 (1.2%). In the EP, agreement between all methods and the reference PCR result was 98.0% for HLSR, 99.3% for HLGR, and 98. 6% for VR. In the RP, the percentages of results +/- 1 log2 dilution of the all-participant mode were as follows: for VR, 100% (PM-8), 98.9% (QA), and 90.0% (RBM); for HLSR, 99.6% (RBM), 98.5% (PM-8), and 82.2% (QA); and for HLGR, 99.6% (RBM), 99.3% (PM-8), and 98.1% (QA). The ability of the PM-8 to detect VR and HLAR in enterococci was comparable to those for reference susceptibility and molecular PCR methods and was considered acceptable for routine clinical laboratory use.


Subject(s)
Anti-Bacterial Agents/pharmacology , Enterococcus/drug effects , Gram-Positive Bacteria/drug effects , Microbial Sensitivity Tests/methods , Microbial Sensitivity Tests/standards , Vancomycin/pharmacology , Drug Resistance, Microbial , Enterococcus/genetics , Enterococcus/isolation & purification , Gentamicins/pharmacology , Gram-Positive Bacteria/genetics , Humans , Laboratories/standards , Quality Control , Reference Values , Reproducibility of Results , Streptomycin/pharmacology , United States
13.
J Clin Microbiol ; 36(6): 1601-3, 1998 Jun.
Article in English | MEDLINE | ID: mdl-9620384

ABSTRACT

The overall recovery of organisms and time to detection with the BACTEC 9050 and BACTEC 9240 systems were compared in a multicenter evaluation. In the first phase of the study, a total of 4,383 compliant aerobic (Plus Aerobic/F) blood culture sets were processed. There was no significant difference in the recovery of individual groups of organisms with the two systems, with the exception of Streptococcus pneumoniae which was isolated more frequently with BACTEC 9050. False-positive signals occurred more often with BACTEC 9240 (58 cultures) than with BACTEC 9050 (43 cultures), but false-negative cultures were uncommon with both systems (3 cultures for each system). Time to detection of positive cultures of clinically significant organisms was essentially the same with both instruments. In the second phase of the study, 2,431 compliant anaerobic (Plus Anaerobic/F) blood culture sets were processed. There was no significant difference in the recovery of organisms with BACTEC 9050 compared with BACTEC 9240. Significantly (P < 0.03) more false-positive signals occurred with BACTEC 9240 (15 cultures) than with BACTEC 9050 (4 cultures). Likewise, more false-negative cultures occurred with BACTEC 9240 (11 cultures) than with BACTEC 9050 (8 cultures). Time to detection of positive cultures of clinically significant organisms was essentially the same with both systems with the exception of anaerobes (N = 10), which were recovered earlier (P < 0.01) with BACTEC 9240 (35.0 h) than with BACTEC 9050 (61.4 h).


Subject(s)
Bacteria/isolation & purification , Blood/microbiology , Fungi/isolation & purification , Microbiological Techniques/instrumentation , Aerobiosis , Anaerobiosis , Bacteremia/diagnosis , Culture Media , Evaluation Studies as Topic , False Negative Reactions , False Positive Reactions , Fungemia/diagnosis , Humans , Time Factors
14.
Plast Reconstr Surg ; 100(1): 182-96, 1997 Jul.
Article in English | MEDLINE | ID: mdl-9207676

ABSTRACT

In vitro and in vivo experiments were conducted to determine whether intraluminal saline in breast implants can support the growth of common wound-infecting microorganisms over a prolonged period of time. The bacteria tested were Staphylococcus aureus, Staphylococcus epidermidis, Escherichia coli, Corynebacterium jeikeium, Enterobacter cloacae, Klebsiella pneumoniae, and Pseudomonas aeruginosa. Three fungal species also were tested: Aspergillus fumigatus, Paecilomyces variotii, and Candida albicans. In the in vitro study, four organisms survived in flasks of sterile saline for the 2 weeks in which serial cultures were performed: K. pneumoniae, C. albicans, A. fumigatus, and P. variotii. In the in vivo study, 61 white rabbits (122 implants) received both an experimental implant inoculated with one of the test organisms and a control implant containing only sterile saline. They were sacrificed at 1-, 3-, or 6-month scheduled endpoints. None of the control implants containing sterile saline had positive cultures. In contrast, the intraluminal saline was culture positive for 7 of the 10 inoculated organisms after varying lengths of time: S. epidermidis, E. coli, E. cloacae, K. pneumoniae, P. aeruginosa, A. fumigatus, and P. variotii. Samples of capsular tissue also were cultured. Of the 122 capsular tissue specimens, 21 (17 percent) had positive cultures and surrounded both inoculated and sterile implants. In most instances, capsules that were culture positive contained an organism different from the one that had been inoculated in the group. In only 3 cases was the same organism cultured from both the periprosthetic tissue and the intraluminal saline, and these may represent instances of the inoculated organism migrating through the implants filler valves. The data show that several types of bacteria (particularly gram-negative species) and fungi can grow and reproduce in a restricted saline environment for extended periods of time.


Subject(s)
Bacteria/growth & development , Breast Implants/microbiology , Fungi/growth & development , Animals , Bacteria/isolation & purification , Culture Media , Female , Fungi/isolation & purification , Rabbits , Random Allocation , Silicone Elastomers , Sodium Chloride , Time Factors
15.
J Clin Microbiol ; 35(1): 53-8, 1997 Jan.
Article in English | MEDLINE | ID: mdl-8968880

ABSTRACT

Blood specimens collected from adult patients with suspected sepsis in four medical centers were inoculated into BACTEC Plus/F and BacT/Alert FAN aerobic culture bottles. Both bottles of 7,401 bottle pairs contained the prescribed blood volume of 8 to 12 ml. Bottles were incubated in their respective instruments for a standard 7-day protocol or until the instruments signaled that they were positive. A total of 720 isolates that were judged to represent true infections were recovered from 338 patients; 451 isolates were recovered from both bottles, 143 were recovered from only the Plus/F bottle, and 126 were recovered from only the FAN bottle (P was not significant). Although more Histoplasma capsulatum isolates were recovered from Plus/F bottles (P < 0.005), there were no other statistically significant differences in recovery rates of individual species or groups of organisms between the two systems. Of 329 monomicrobic patient septic episodes, 244 episodes were detected by both blood culture systems, 40 were detected only by the BACTEC system, and 45 were detected only by the BacT/Alert system (P was not significant). There was no significant difference between the two systems in the detection of septic episodes among patients receiving antibiotic therapy at the time of blood cultures. Of the cultures found to be positive within the first 72 h of incubation, detection was on average earlier by the BACTEC system (16.9 h) than by the BacT/Alert system (18.7 h). Larger differences in average time to detection were seen with streptococci (10.7 h by the BACTEC system and 17.9 h by the BacT/Alert system) and yeasts (an average of 29.4 h by the BacT/Alert system versus 37.2 h by the BACTEC system). With the exception of the differences noted above, BACTEC Plus/F aerobic resin and BacT/Alert aerobic FAN blood culture bottles were comparable in their abilities to recover aerobic and facultative organisms.


Subject(s)
Bacteremia/diagnosis , Bacterial Typing Techniques , Fungemia/diagnosis , Mycological Typing Techniques , Adult , Cell Culture Techniques , Culture Media , Humans
16.
J Clin Microbiol ; 34(11): 2679-84, 1996 Nov.
Article in English | MEDLINE | ID: mdl-8897164

ABSTRACT

A six-laboratory collaborative study was conducted to develop MIC and zone diameter quality control limits and interpretive criteria for antimicrobial susceptibility testing of Streptococcus pneumoniae with azithromycin, clarithromycin, dirithromycin, and clindamycin. The MICs of all of the agents plus erythromycin for 302 clinical isolates of pneumococci that had been selected with an emphasis on resistant strains were determined by use of the National Committee for Clinical Laboratory Standards (NCCLS)-recommended broth microdilution procedure. The zone diameters of the isolates were also determined for the same agents except erythromycin by the NCCLS disk diffusion test procedure. Repeated testing of S. pneumoniae ATCC 49619 with different sources and lots of media and disks allowed development of MIC and zone diameter quality control ranges for these agents. Interpretive criteria for the MIC of azithromycin were established and were as follows: susceptible, < or = 0.5 microgram/ml; intermediate, 1 microgram/ml; and resistant, > or = 2 micrograms/ml. The interpretive criteria advocated for the MICs of clarithromycin and clindamycin were as follows: susceptible, < or = 0.25 microgram/ml; intermediate, 0.5 microgram/ml; and resistant, > or = 1 microgram/ml. Comparison of MICs and disk diffusion zone diameters led to the development of interpretive criteria for the zone diameters for azithromycin, clarithromycin, and clindamycin that correlated well with these MIC breakpoints. Testing of this organism collection also led to the reestablishment of the erythromycin MIC breakpoints as being identical to those of clarithromycin, which resulted in equivalent cross-susceptibility and cross-resistance for the three macrolides that are currently marketed in the United States. Thus, the susceptibility of pneumococci to azithromycin and clarithromycin can be predicted accurately by testing only erythromycin in clinical laboratories. This recommendation, as well as the interpretive and quality control criteria that are described, have been accepted by NCCLS and are included in the latest NCCLS susceptibility testing guidelines.


Subject(s)
Anti-Bacterial Agents/pharmacology , Clindamycin/pharmacology , Microbial Sensitivity Tests/methods , Microbial Sensitivity Tests/standards , Streptococcus pneumoniae/drug effects , Drug Resistance, Microbial , Erythromycin/pharmacology , Humans , Pneumococcal Infections/drug therapy , Pneumococcal Infections/microbiology , Quality Control , Streptococcus pneumoniae/isolation & purification
17.
J Clin Microbiol ; 34(7): 1776-8, 1996 Jul.
Article in English | MEDLINE | ID: mdl-8784588

ABSTRACT

We sent a questionnaire to 79 clinical microbiology laboratories seeking information on contemporary practices when investigating for bacterial and protozoan enteric pathogens. Data from the 67 respondents (response rate of 85%) showed that a minority of laboratories (40% for stool culture and 45% for ova and parasite [O&P] examinations) had restrictions for testing in place and that fewer laboratories (24% for stool culture and 19% for O&P examinations) rejected specimens from patients who had been in the hospital for > 3 days. Using two estimates, 15 and 40%, for the proportion of all specimens received from patients in the hospital for > 3 days, we calculated savings for the average hospital in this survey. Reagent savings of $4,000 to $10,000 and time savings of 274 to 731 h per year might have been realized. Moreover, between $26,000 and $71,000 in patient charges could have been prevented. On the basis of this survey, wider application of rejection criteria when testing for enteric pathogens appears possible. If implemented, savings to the nation's health care system could be between $27 and $73 million a year.


Subject(s)
Feces/microbiology , Feces/parasitology , Laboratories, Hospital , Animals , Costs and Cost Analysis , Feces/cytology , Hospitalization , Humans , Laboratories, Hospital/economics , Leukocytes , Parasite Egg Count , Surveys and Questionnaires , Time Factors
18.
J Clin Microbiol ; 34(1): 170-4, 1996 Jan.
Article in English | MEDLINE | ID: mdl-8748295

ABSTRACT

A multilaboratory collaborative study was carried out to assess the utility of the spiral gradient endpoint (SGE) method for the determination of the antimicrobial susceptibilities of anaerobes and to evaluate the equivalence of the MICs obtained by the SGE method with those obtained by the reference agar dilution method of the National Committee for Clinical Laboratory Standards. The standard deviation of the MIC obtained by the SGE method for the five participating laboratories was +/- 0.26 of a twofold dilution, whereas it was +/- 1 twofold dilution by the reference method. The interlaboratory reproducibility of the results for two control strains tested with imipenem, chloramphenicol, and metronidazole indicated that 96% of the measurements fell within +/- 1 twofold dilution of the mode. The equivalence of the SGE method with the agar dilution method was assessed with a wide variety of anaerobic organisms. The MICs by both methods were within 1 doubling dilution in 93% of the measurements (n = 1,074). Discrepancies generally occurred with those organism-drug combinations that resulted in tailing endpoints (Fusobacterium nucleatum, 86% agreement) or in cases of light growth (Peptostreptococcus spp., 86% agreement).


Subject(s)
Bacteria, Anaerobic/drug effects , Microbial Sensitivity Tests/methods , Agar , Bacteria, Anaerobic/growth & development , Bacteria, Anaerobic/isolation & purification , Bacteroides/drug effects , Drug Resistance, Microbial , Evaluation Studies as Topic , Fusobacterium/drug effects , Humans , Laboratories , Microbial Sensitivity Tests/statistics & numerical data , Peptostreptococcus/drug effects , Reproducibility of Results
19.
J Antimicrob Chemother ; 37(1): 139-43, 1996 Jan.
Article in English | MEDLINE | ID: mdl-8647755

ABSTRACT

The susceptibility of Neisseria gonorrhoeae to PD 131628 and grepafloxacin (OPC 17116) was evaluated by agar dilution and disc diffusion methods. A tentative susceptibility category for both fluoroquinolones included strains for which the MICs are < or = 0.06 mg/L and the zones of inhibition are > or = 38 mm for PD 131628 and > or = 37 mm for grepafloxacin. Quality control studies with N. gonorrhoeae ATCC 49226 suggested that agar dilution MIC limits were 0.002-0.008 mg/L and 0.004-0.03 mg/L for PD 131628 and grepafloxacin, respectively. The zone size limits were 50-58 mm for PD 131628 and 44-52 mm for grepafloxacin.


Subject(s)
Anti-Infective Agents/pharmacology , Fluoroquinolones , Naphthyridines/pharmacology , Neisseria gonorrhoeae/drug effects , Piperazines/pharmacology , Quinolones/pharmacology , Humans , Microbial Sensitivity Tests/standards , Quality Control
20.
Plast Reconstr Surg ; 96(6): 1430-4, 1995 Nov.
Article in English | MEDLINE | ID: mdl-7480245

ABSTRACT

This report describes a case of gross contamination with the filamentous fungus P. variotii cultured from an intraluminal saline breast implant removed from a patient 14 months after implantation because of severe capsular contracture. We suspect the fungal contamination occurred when a container of saline was left open in the operating room prior to filling and placement of the implant. This case may be the first documented report of microbial growth and reproduction in the internal environment of a saline implant. We assume that organisms such as P. variotii can survive--and accumulate biomass--on the minute amounts of substrates that diffuse across an implant envelope.


Subject(s)
Breast Implants/adverse effects , Breast Implants/microbiology , Mycoses , Paecilomyces , Prosthesis-Related Infections/microbiology , Humans , Male , Middle Aged , Sodium Chloride
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