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1.
Cell Metab ; 19(1): 122-34, 2014 Jan 07.
Article in English | MEDLINE | ID: mdl-24361012

ABSTRACT

Pancreatic ß cells adapt to compensate for increased metabolic demand during insulin resistance. Although the microRNA pathway has an essential role in ß cell proliferation, the extent of its contribution is unclear. Here, we report that miR-184 is silenced in the pancreatic islets of insulin-resistant mouse models and type 2 diabetic human subjects. Reduction of miR-184 promotes the expression of its target Argonaute2 (Ago2), a component of the microRNA-induced silencing complex. Moreover, restoration of miR-184 in leptin-deficient ob/ob mice decreased Ago2 and prevented compensatory ß cell expansion. Loss of Ago2 during insulin resistance blocked ß cell growth and relieved the regulation of miR-375-targeted genes, including the growth suppressor Cadm1. Lastly, administration of a ketogenic diet to ob/ob mice rescued insulin sensitivity and miR-184 expression and restored Ago2 and ß cell mass. This study identifies the targeting of Ago2 by miR-184 as an essential component of the compensatory response to regulate proliferation according to insulin sensitivity.


Subject(s)
Argonaute Proteins/metabolism , Insulin-Secreting Cells/cytology , Insulin-Secreting Cells/metabolism , Animals , Cell Proliferation , Diet, Ketogenic , Gene Expression Regulation , Gene Silencing , Humans , Insulin Resistance/genetics , Mice , Mice, Obese , MicroRNAs/genetics , MicroRNAs/metabolism
2.
Genome Biol ; 14(8): R84, 2013 Aug 16.
Article in English | MEDLINE | ID: mdl-23958307

ABSTRACT

The regulation of intragenic miRNAs by their own intronic promoters is one of the open problems of miRNA biogenesis. Here, we describe PROmiRNA, a new approach for miRNA promoter annotation based on a semi-supervised statistical model trained on deepCAGE data and sequence features. We validate our results with existing annotation, PolII occupancy data and read coverage from RNA-seq data. Compared to previous methods PROmiRNA increases the detection rate of intronic promoters by 30%, allowing us to perform a large-scale analysis of their genomic features, as well as elucidate their contribution to tissue-specific regulation. PROmiRNA can be downloaded from http://promirna.molgen.mpg.de.


Subject(s)
Algorithms , Brain/metabolism , Genomics/methods , MicroRNAs/genetics , Promoter Regions, Genetic , Transcription Factors/genetics , Brain/growth & development , Brain Chemistry , Databases, Genetic , Gene Expression Regulation, Developmental , Humans , Introns , MicroRNAs/chemistry , Molecular Sequence Annotation , Transcription Factors/metabolism
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