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1.
J Enzyme Inhib Med Chem ; 30(2): 216-23, 2015 Apr.
Article in English | MEDLINE | ID: mdl-24939099

ABSTRACT

The new histone deacylases inhibitors (HDACi) were synthesized in the class of 5-membered cyclic hydroxamic acids (5-CHA), showing medium size CHA as a new Zn-binding group. New reaction sequence was proposed for the synthesis of 5-membered alkylidene-cyclic-hydroxamic acids starting from butyrolactone. Compound 10c showed low µM activity on HeLa cell extracts. From these results, cyclic hydroxamic acids will be further investigated to find more potent compounds.


Subject(s)
Acids, Heterocyclic/chemical synthesis , Drug Design , Histone Deacetylase Inhibitors/chemical synthesis , Hydroxamic Acids/chemical synthesis , Acids, Heterocyclic/chemistry , Acids, Heterocyclic/pharmacology , Dose-Response Relationship, Drug , HeLa Cells , Histone Deacetylase Inhibitors/chemistry , Histone Deacetylase Inhibitors/pharmacology , Humans , Hydroxamic Acids/chemistry , Hydroxamic Acids/pharmacology , Molecular Structure , Structure-Activity Relationship
2.
ACS Med Chem Lett ; 5(4): 373-7, 2014 Apr 10.
Article in English | MEDLINE | ID: mdl-24900843

ABSTRACT

Antimalarial hit 1 SR (TCMDC-134674) identified in a GlaxoSmithKline cell based screening campaign was evaluated for inhibitory activity against the digestive vacuole plasmepsins (Plm I, II, and IV). It was found to be a potent Plm IV inhibitor with no selectivity over Cathepsin D. A cocrystal structure of 1 SR bound to Plm II was solved, providing structural insight for the design of more potent and selective analogues. Structure-guided optimization led to the identification of structurally simplified analogues 17 and 18 as low nanomolar inhibitors of both, plasmepsin Plm IV activity and P. falciparum growth in erythrocytes.

3.
Planta Med ; 80(4): 306-14, 2014 Mar.
Article in English | MEDLINE | ID: mdl-24549927

ABSTRACT

In a screening programme directed towards the discovery of drugs that could enhance sexual activity, we found that a decoction of the root bark of Neobeguea mahafalensis displayed an extraordinarily high potency and remarkably long duration in augmenting sexual activity in male rodents. Bioassay-guided fractionation led to the isolation of two pharmacoactive constituents, which turned out to be novel 1,8,9-orthoacetate phragmalin limonoids that we named libiguins A and B, each with a C-16/30 δ-lactone ring. Chemical structures were established by the interpretation of their 1D and 2D NMR data. In vivo pharmacological tests showed that starting with a treatment from 0.004-0.4 mg/kg/day for three consecutive days, over a 3-h sampling period, these limonoids induced a long-lasting augmentation of frequency and sustainment of mounting behaviour in male rodents, with an effect lasting for up to 11 days post-treatment. Libiguin A proved to be markedly more potent than libiguin B. This report is the first of limonoids having such an effect, and the findings could lead to novel therapies for the treatment of sexual dysfunction. Moreover, the results can serve as an opening to elucidate the central physiological control of mating behaviour, which is still not well mapped out.


Subject(s)
Aphrodisiacs/pharmacology , Limonins/pharmacology , Meliaceae/chemistry , Plant Extracts/pharmacology , Sexual Behavior/drug effects , Animals , Aphrodisiacs/isolation & purification , Limonins/chemistry , Limonins/isolation & purification , Male , Mice , Molecular Structure , Plant Bark , Plant Extracts/chemistry , Plant Roots , Rats
4.
Molecules ; 13(8): 1846-63, 2008 Aug 26.
Article in English | MEDLINE | ID: mdl-18794789

ABSTRACT

Two molecules of indole derivative, e.g. indole-5-carboxylic acid, reacted with one molecule of thiol, e.g. 1,2-ethanedithiol, in the presence of trifluoroacetic acid to yield adducts such as 3-[2-(2-amino-5-carboxyphenyl)-1-(2-mercaptoethylthio)ethyl]-1Hindole-5-carboxylic acid. Parallel formation of dimers, such as 2,3-dihydro-1H,1'H-2,3'-biindole-5,5'-dicarboxylic acid and trimers, such as 3,3'-[2-(2-amino-5-carboxyphenyl) ethane-1,1-diyl]bis(1H-indole-5-carboxylic acid) of the indole derivatives was also observed. Reaction of a mixture of indole and indole-5-carboxylic acid with 2-phenylethanethiol proceeded in a regioselective way, affording 3-[2-(2-aminophenyl)-1-(phenethylthio)ethyl]-1H-indole-5-carboxylic acid. An additional product of this reaction was 3-[2-(2-aminophenyl)-1-(phenethylthio)ethyl]-2,3-dihydro-1H,1'H-2,3'-biindole-5'-carboxylic acid, which upon standing in DMSO-d6 solution gave 3-[2-(2-aminophenyl)-1-(phenethylthio)ethyl]-1H,1'H-2,3'-biindole-5'-carboxylic acid. Structures of all compounds were elucidated by NMR, and a mechanism for their formation was suggested.


Subject(s)
Indoles/chemistry , Sulfhydryl Compounds/chemistry , Dimerization , Magnetic Resonance Spectroscopy , Molecular Structure
5.
Bioorg Med Chem ; 15(17): 5787-810, 2007 Sep 01.
Article in English | MEDLINE | ID: mdl-17618123

ABSTRACT

Two hundred and ten tertiary amides were prepared on solid phase. Diamines were coupled to activated carboxylated Wang polymer, and the polymeric substituted benzyloxycarbonyl protected diamines obtained were reacted with aldehydes or ketones in trimethyl orthoformate giving resin attached Schiff bases. Coupled resins were then reduced to secondary amines by sodium cyanoborohydride in 4% acetic acid/trimethyl orthoformate, followed by acylation with the carboxylic acid in the presence of PyBroP and diisopropylethylamine. Cleavage of tertiary amides from the resin was made by trifluoroacetic acid in the presence of scavengers (mainly 1,2-ethanedithiol). When indole derivatives were prepared, parallel alkylation with the linker fragment occurred, giving derivatives of 2-(4-hydroxybenzyl)-indole as side products. Solution synthesis or mixed liquid/solid phase preparation of title substances proved to be advantageous in cases when the above method did not give acceptable results. According to this approach an efficient formation of Schiff bases was achieved in the presence of TiCl(4). Substances were isolated by reversed phase chromatography; in some cases isomers were additionally separated by chiral chromatography on Chirobiotic T. When tested on human recombinant melanocortin receptors all the tertiary amides showed some binding affinities; for the highest affinity compounds the K(i)s reached 400 nM on MC(1), 2 microM on MC(3) and 1 microM on MC(4) and MC(5) receptors. cAMP assays of some of the title compounds showed that the tertiary amides are melanocortin receptor antagonists on the four MC receptor subtypes.


Subject(s)
Amides/chemical synthesis , Amides/pharmacology , Drug Design , Melanocortins/chemistry , Melanocortins/metabolism , Molecular Mimicry , Amides/chemistry , Amides/metabolism , Animals , Binding Sites , Biomimetics , Cell Line , Chromatography, High Pressure Liquid , Cyclic AMP/biosynthesis , Humans , Magnetic Resonance Spectroscopy , Melanoma/metabolism , Melanoma/pathology , Molecular Structure , Solutions , Structure-Activity Relationship , alpha-MSH/pharmacology
6.
Proteins ; 69(1): 83-96, 2007 Oct 01.
Article in English | MEDLINE | ID: mdl-17557335

ABSTRACT

The melanocortin (MC) system confines unique G-protein coupled receptor pathways, which include the MC(1-5) receptors and their endogenous agonists and antagonists, the MCs and the agouti and agouti-related proteins. The MC4 receptor is an important target for development of drugs for treatment of obesity and cachexia. While natural MC peptides are selective for the MC1 receptor, some cyclic pentapeptides, such as the HS-129 peptide, show high selectivity for the MC4 receptor. Here we gained insight into the mechanisms for its recognition by MC receptors. To this end we correlated the interaction data of four HS peptide analogues with four wild-type and 14 multiple chimeric MC receptors to the binary and physicochemical descriptions of the studied entities by use of partial least squares regression, which resulted in highly valid proteochemometric models. Analysis of the models revealed that the recognition sites of the HS peptides are different from the earlier proteochemometrically mapped linear MSH peptides' recognitions sites, although they overlap partially. The analysis also revealed important amino acids that explain the selectivity of the HS-129 peptide for the MC4 receptor.


Subject(s)
Peptides, Cyclic/chemistry , Peptides, Cyclic/metabolism , Receptors, Melanocortin/chemistry , Receptors, Melanocortin/metabolism , Agouti Signaling Protein , Amino Acid Sequence , Binding Sites , Computational Biology/methods , Intercellular Signaling Peptides and Proteins/metabolism , Melanocortins , Molecular Sequence Data , Recombinant Fusion Proteins/chemistry , Reproducibility of Results
7.
PLoS Comput Biol ; 3(3): e48, 2007 Mar 09.
Article in English | MEDLINE | ID: mdl-17352531

ABSTRACT

Retroviruses affect a large number of species, from fish and birds to mammals and humans, with global socioeconomic negative impacts. Here the authors report and experimentally validate a novel approach for the analysis of the molecular networks that are involved in the recognition of substrates by retroviral proteases. Using multivariate analysis of the sequence-based physiochemical descriptions of 61 retroviral proteases comprising wild-type proteases, natural mutants, and drug-resistant forms of proteases from nine different viral species in relation to their ability to cleave 299 substrates, the authors mapped the physicochemical properties and cross-dependencies of the amino acids of the proteases and their substrates, which revealed a complex molecular interaction network of substrate recognition and cleavage. The approach allowed a detailed analysis of the molecular-chemical mechanisms involved in substrate cleavage by retroviral proteases.


Subject(s)
Drug Resistance, Viral/physiology , Models, Biological , Peptide Hydrolases/chemistry , Peptide Hydrolases/metabolism , Retroviridae Proteins/chemistry , Retroviridae/enzymology , Sequence Analysis, Protein/methods , Amino Acid Sequence , Binding Sites , Computer Simulation , HIV-1/enzymology , Molecular Sequence Data , Protein Binding , Protein Interaction Mapping/methods , Signal Transduction/physiology , Structure-Activity Relationship
8.
Proteins ; 67(3): 653-60, 2007 May 15.
Article in English | MEDLINE | ID: mdl-17357163

ABSTRACT

The interactions of alpha-MSH peptides with melanocortin receptors (MCRs) were located by proteochemometric modeling. Nine alpha-MSH peptide analogues were constructed by exchanging the Trp9 residue in the alpha-MSH core with the natural or artificial amino acids Arg, Asp, Cys, Gly, Leu, Nal, d-Nal, Pro, or d-Trp. The nine peptides created, and alpha-MSH itself, were evaluated for their interactions with the 4 wild-type MC(1,3-5)Rs and 15 multichimeric MCRs, each of the latter being constructed from three sequence segments, each taken from a different wild-type MC(1,3-5)R. The segments of the chimeric MCRs were selected according to the principles of statistical molecular design and were arranged so as to divide the receptors into five parts. By this approach, a set of 19 maximally diverse MC receptor proteins was obtained for which the interaction activity with the 10 peptides were measured by radioligand binding thus creating data for 190 ligand-protein pairs, which were subsequently analyzed by use of proteochemometric modeling. In proteochemometrics, the structural or physicochemical properties of both interaction partners, which represent the complementarity of the interacting entities, are used to create multivariate mathematical descriptions. (Here, physicochemical property descriptors of the receptors' and peptides' amino acids were used). A valid, highly predictive (Q2 = 0.74) and easily interpretable model was then obtained. The model was further validated by its ability to correctly predicting the affinity of alpha-MSH for new point and cassette-mutated MC4/MC1Rs, and it was then used to identify the receptor residues that are important for affording the high affinity and selectivity of alpha-MSH for the MC1R. It was revealed that these residues are located in several quite distant parts of the receptors' transmembrane cavity and must therefore cause their influence at various stages of the dynamic ligand-binding process, such as by affecting the conformation of the ligand at the vicinity of the receptor and taking part in the path of the ligand's entry into its binding pocket. Our study can be used as a template how to create high resolution proteochemometric models when there are a limited number of natural proteins and ligands available.


Subject(s)
Peptides/chemistry , Receptors, Melanocortin/chemistry , Tryptophan/chemistry , alpha-MSH/chemistry , Binding Sites , Humans , Models, Molecular , Peptides/metabolism , Protein Binding , Receptors, Melanocortin/metabolism , Recombinant Fusion Proteins/chemistry , Recombinant Fusion Proteins/genetics , Recombinant Fusion Proteins/metabolism , Structure-Activity Relationship , alpha-MSH/metabolism
9.
Neurochem Int ; 49(5): 533-42, 2006 Oct.
Article in English | MEDLINE | ID: mdl-16764968

ABSTRACT

The melanocortin 4 receptor (MC(4)R) binding of the peptide analogue of melanocyte stimulating hormone, [(125)I]NDP-MSH, and the low molecular weight radionucleid 1-(D-1,2,3,4-tetrahydroisoquinoline-3-carboxy-D-4-(125)iodophenylalanyl)-4-cyclohexyl-4-[(1,2,4-triazol-1-yl)methyl]piperidine trifluoroacetate ([(125)I]THIQ) were compared. Kinetic analysis indicated heterogeneity in the binding of both radioligands, the binding apparently proceeding to two tandemly arranged interconnected mutually dependent binding sites. Steric considerations and BRET analysis of Rluc and GFP tagged receptors proposed that these sites are located on different subunits of receptor dimers, which form receptor complexes. According to the minimal model proposed, ligand binding proceeds consecutively to the two binding sites of the dimer. After binding of the first ligand conformational transformations of the complex occur, which is followed by binding of the second ligand. When both receptor units have bound [(125)I]NDP-MSH, the radioligand can be released only from one unit. The [(125)I]NDP-MSH bound to the remaining unit stays practically irreversibly bound due to a very slow retransformation rate of the transformed complex. The considerably faster binding of [(125)I]THIQ did not allow accurate kinetic differentiation of the two binding sites. However, addition of NDP-MSH as well as a fragment of the human agouti protein, hAGRP(83-132) to the preformed [(125)I]THIQ-MC(4)R complex drastically retarded the release of [(125)I]THIQ from the complex, blocking conformational transformations in the complex by binding into the second binding site. The consecutive binding of ligands to the MC(4)R dimers has substantial impact on the apparent ligand potencies, when determined in competition with the two different radioligands applied herein; the apparent potencies of the same ligand differing up to three orders of magnitude when assayed in competition with [(125)I]NDP-MSH or [(125)I]THIQ.


Subject(s)
Receptor, Melanocortin, Type 4/metabolism , Binding Sites , Cells, Cultured , Dimerization , Humans , Iodine Radioisotopes , Kinetics , Ligands , Radioligand Assay , Receptor, Melanocortin, Type 4/chemistry
10.
Biochem J ; 397(1): 203-11, 2006 Jul 01.
Article in English | MEDLINE | ID: mdl-16489931

ABSTRACT

The NS3 (dengue virus non-structural protein 3) serine protease of dengue virus is an essential component for virus maturation, thus representing an attractive target for the development of antiviral drugs directed at the inhibition of polyprotein processing. In the present study, we have investigated determinants of substrate specificity of the dengue virus NS3 protease by using internally quenched fluorogenic peptides containing Abz (o-aminobenzoic acid; synonymous to anthranilic acid) and 3-nitrotyrosine (nY) representing both native and chimaeric polyprotein cleavage site sequences. By using this combinatorial approach, we were able to describe the substrate preferences and determinants of specificity for the dengue virus NS2B(H)-NS3pro protease. Kinetic parameters (kcat/K(m)) for the hydrolysis of peptide substrates with systematic truncations at the prime and non-prime side revealed a length preference for peptides spanning the P4-P3' residues, and the peptide Abz-RRRRSAGnY-amide based on the dengue virus capsid protein processing site was discovered as a novel and efficient substrate of the NS3 protease (kcat/K(m)=11087 M(-1) x s(-1)). Thus, while having confirmed the exclusive preference of the NS3 protease for basic residues at the P1 and P2 positions, we have also shown that the presence of basic amino acids at the P3 and P4 positions is a major specificity-determining feature of the dengue virus NS3 protease. Investigation of the substrate peptide Abz-KKQRAGVLnY-amide based on the NS2B/NS3 polyprotein cleavage site demonstrated an unexpected high degree of cleavage efficiency. Chimaeric peptides with combinations of prime and non-prime sequences spanning the P4-P4' positions of all five native polyprotein cleavage sites revealed a preponderant effect of non-prime side residues on the K(m) values, whereas variations at the prime side sequences had higher impact on kcat.


Subject(s)
Dengue Virus/enzymology , Viral Nonstructural Proteins/metabolism , Escherichia coli , Fluorescence , Peptide Library , RNA Helicases/metabolism , Serine , Serine Endopeptidases/metabolism , Substrate Specificity , Tyrosine/analogs & derivatives , Tyrosine/chemistry , ortho-Aminobenzoates/chemistry
11.
Peptides ; 27(6): 1443-50, 2006 Jun.
Article in English | MEDLINE | ID: mdl-16414147

ABSTRACT

Melanocortins possess strong anti-inflammatory effects acting in the central nervous system via inhibition of the production of nitric oxide (NO) during brain inflammation. To shed more light into the role of melanocortin (MC) receptor subtypes involved we synthesized and evaluated some novel peptides, modified in the melanocyte-stimulating hormone (MSH) core structure, natural MCs and known MC receptor selective peptides - MS05, MS06. Since the study included both selective, high affinity binders and the novel peptides, it was possible to do the correlation analysis of binding activities and the NO induction-related anti-inflammatory effect of the peptides. beta-MSH, gamma1-MSH, gamma2-MSH, alpha-MSH, MS05, Ac-MS06 and Ac-[Ser12]MS06 caused dose dependent inhibition of the lipopolysaccharide (LPS)-induced increase of NO overproduction in the mice forebrain whereas MSH core modified peptides Ac-[Asp9,Ser12]MS06, [Asp9]alpha-MSH and [Asp16]beta-MSH were devoid of this effect in doses up to 10 nmol per mouse. When the minimal effective dose required for inhibition of NO production was correlated with the in vitro binding activity to MC receptor subtypes a strong and significant correlation was found for the MC3 receptor (r = 0.90; p = 0.0008), whereas weak correlation was present for the other receptors. Our results suggest that the MC3 receptor is the major player in mediating the anti-inflammatory activity of MCs in the central nervous system.


Subject(s)
Inflammation/pathology , Nitric Oxide/antagonists & inhibitors , Nitric Oxide/chemistry , Receptor, Melanocortin, Type 3/chemistry , Animals , Anti-Inflammatory Agents/pharmacology , Central Nervous System/pathology , Electron Spin Resonance Spectroscopy , Insecta , Lipopolysaccharides/metabolism , Male , Mice , Mice, Inbred ICR , Peptides/chemistry , Protein Binding , Receptors, Melanocortin/metabolism
12.
Peptides ; 26(10): 1997-2016, 2005 Oct.
Article in English | MEDLINE | ID: mdl-15985308

ABSTRACT

Thirty-three low molecular mass structures combining both peptide and peptoid features were prepared and tested on human melanocortin receptors MC1,3-5R. Most of them displayed low micromolar activity with preference for diamines, guanidino and 2-naphthyl derivatives compared to monoacetylated, amino and 3-indolyl counterparts. Some contained L- or D-histidine residues, but the change did not influence affinity. QSAR modelling yielded excellent models for the MC3-5 receptors explaining R2Y=0.89-0.91 and predicting Q2=0.77-0.80 of the affinity variations. One compound displayed MC1R selectivity (13-fold and more). An NMR study of showed that it exists as a mixture of four rotamers at its tertiary amide bonds. Comparisons with earlier data for melanocortin core tetrapeptide analogues indicate that the novel peptide-peptoids interact with the melanocortin receptors in a different way.


Subject(s)
Amides/metabolism , Dipeptides/chemical synthesis , Dipeptides/metabolism , Molecular Mimicry , Quantitative Structure-Activity Relationship , Receptors, Melanocortin/metabolism , Alkylation , Amides/chemistry , Animals , Binding Sites , Cell Line , Humans , Magnetic Resonance Spectroscopy , Models, Molecular , Receptors, Melanocortin/chemistry , Spodoptera
13.
Eur J Pharmacol ; 512(2-3): 85-95, 2005 Apr 11.
Article in English | MEDLINE | ID: mdl-15840392

ABSTRACT

This study evaluates the binding the melanocyte stimulating hormone peptide analogue [125I]NDP-MSH to melanocortin receptors MC1, MC3, MC4 and MC5 in insect cell membranes produced by baculovirus expression systems. The presence of Ca2+ was found to be mandatory to achieve specific [125I]NDP-MSH binding to the melanocortin receptors. Although association kinetics of [125I]NDP-MSH followed the regularities of simple bimolecular reactions, the dissociation of [125I]NDP-MSH from the melanocortin receptors was heterogeneous. Eleven linear and cyclic MSH peptides studied displaced the [125I]NDP-MSH binding to the studied melanocortin receptors, with the shapes of their competition curves varying from biphasic or shallow to super-steep (Hill coefficients ranging from 0.4 to 1.5). Notably the same peptide often gave highly different patterns on different melanocortin receptor subtypes; e.g. the MC4 receptor selective antagonist HS131 gave a Hill coefficient of 1.5 on the MC1 receptor but 0.5-0.7 on the MC(3-5) receptors. Adding a mask of one of the peptides to block its high affinity binding did not prevent other competing peptides to yield biphasic competition curves. The data indicate that the binding of MSH peptides to melanocortin receptors are governed by a complex dynamic homotropic co-operative regulations.


Subject(s)
Receptors, Melanocortin/metabolism , alpha-MSH/analogs & derivatives , Animals , Binding Sites , Binding, Competitive/drug effects , Calcium/pharmacology , Cell Line , Cell Line, Tumor , Cell Membrane/metabolism , Dose-Response Relationship, Drug , Iodine Radioisotopes , Kinetics , Ligands , Melanoma, Experimental/metabolism , Melanoma, Experimental/pathology , Peptides, Cyclic/metabolism , Peptides, Cyclic/pharmacology , Radioligand Assay , Receptor, Melanocortin, Type 1/metabolism , Receptor, Melanocortin, Type 3/metabolism , Receptor, Melanocortin, Type 4/metabolism , Spodoptera , Time Factors , alpha-MSH/metabolism , gamma-MSH/metabolism , gamma-MSH/pharmacology
14.
Mol Pharmacol ; 67(1): 50-9, 2005 Jan.
Article in English | MEDLINE | ID: mdl-15470082

ABSTRACT

Proteochemometrics was applied in the analysis of the binding of organic compounds to wild-type and chimeric melanocortin receptors. Thirteen chimeric melanocortin receptors were designed based on statistical molecular design; each chimera contained parts from three of the MC(1,3-5) receptors. The binding affinities of 18 compounds were determined for these chimeric melanocortin receptors and the four wild-type melanocortin receptors. The data for 14 of these compounds were correlated to the physicochemical and structural descriptors of compounds, binary descriptors of receptor sequences, and cross-terms derived from ligand and receptor descriptors to obtain a proteochemometric model (correlation was performed using partial least-squares projections to latent structures; PLS). A well fitted mathematical model (R(2) = 0.92) with high predictive ability (Q(2) = 0.79) was obtained. In a further validation of the model, the predictive ability for ligands (Q(2)lig = 0.68) and receptors (Q(2)rec = 0.76) was estimated. The model was moreover validated by external prediction by using the data for the four additional compounds that had not at all been included in the proteochemometric model; the analysis yielded a Q(2)ext = 0.73. An interpretation of the results using PLS coefficients revealed the influence of particular properties of organic compounds on their affinity to melanocortin receptors. Three-dimensional models of melanocortin receptors were also created, and physicochemical properties of the amino acids inside the receptors' transmembrane cavity were correlated to the PLS modeling results. The importance of particular amino acids for selective binding of organic compounds was estimated and used to outline the ligand recognition site in the melanocortin receptors.


Subject(s)
Organic Chemicals/metabolism , Receptor, Melanocortin, Type 1/chemistry , Receptor, Melanocortin, Type 3/chemistry , Receptor, Melanocortin, Type 4/chemistry , Receptors, Corticotropin/chemistry , Base Sequence , Binding Sites , Cloning, Molecular , DNA Primers , Humans , Kinetics , Ligands , Models, Molecular , Protein Conformation , Receptor, Melanocortin, Type 1/metabolism , Receptor, Melanocortin, Type 3/metabolism , Receptor, Melanocortin, Type 4/metabolism , Receptors, Corticotropin/metabolism , Receptors, Melanocortin , Recombinant Fusion Proteins/chemistry , Recombinant Fusion Proteins/metabolism
15.
J Med Chem ; 47(18): 4613-26, 2004 Aug 26.
Article in English | MEDLINE | ID: mdl-15317471

ABSTRACT

A series of piperazine analogues of the melanocortin 4 receptor (MC4R) specific small-molecule agonist "THIQ" was synthesized and characterized structurally and pharmacologically. First, several THIQ imitations lacking the triazole moiety were prepared. Syntheses included acylation of 4-phenylpiperazine or 4-cyclohexylpiperazine. In two cases the tertiary amine function was replaced by the corresponding N-oxide. To obtain more complex structures, a 4-substituted piperazine ring was formed by alkylation of the primary amino group of cyclohexane-derived amino alcohols with N,N-bis(2-chloroethyl)benzylamine. The hydroxylic group of the intermediate was first activated with methanesulfonyl chloride, and the sulfonic ester formed in situ was introduced into the reaction with the sodium salt of 1,2,4-triazole. In one case (i.e., preparation of 23c) introduction of the 1,2,4-triazole moiety was performed at a carbon of the cyclohexane ring. In addition, this intermediate contained a piperazine moiety connected via its nitrogen atom to a cyclohexane ring carbon neighboring the reaction center. As established in NMR and X-ray investigations herein, this substitution proceeded with retention of the initial trans configuration of 1,2-disubstituted cyclohexane. To obtain pure enantiomers of 23c, its precursor 21c was subjected to chiral chromatography on a Chirobiotic V column. The derivatives (R,R)-21cand (S,S)-21c obtained were introduced into further syntheses steps, giving (R,R)-23c and (S,S)-23c, respectively. Melanocortin MC(1,3-5) receptor binding studies showed that all tested piperazine derivatives were active. Several compounds showed clear selectivity for MC4R, with submicromolar affinities being obtained. Among them, one substance, (R,R)-23c, displayed a biphasic curve in displacement of [125I]NDP-MSH on MC4R [K(i)high = 1 nM and K(i)low = 260 nM]. This biphasic competition curve was similarly biphasic to the competition curve obtained herein using THIQ. An X-ray study performed on crystals of the THIQ sulfate salt revealed two closely related conformations, which resemble the shape of the letter "Y", where piperidine and 4-chlorophenyl groups are situated close to each other, but the 1,2,3,4-tetrahydroisoquinoline residue is remote, the triazole function being highly exposed to the environment. The crystals of the dinitrate salt of (R,R)-23c showed a different conformation, where parts of the molecule are spread out almost symmetrically around the central section. Molecular modeling, based on the THIQ crystal structure and the functional similarity of THIQ and (R,R)-23c, allowed us to suggest a possible "bioactive" conformation of (R,R)-23c that is similar to the crystal conformation of THIQ.


Subject(s)
Crystallography, X-Ray , Heterocyclic Compounds, 4 or More Rings/chemistry , Piperazines/chemistry , Receptors, Melanocortin/agonists , Animals , Cell Line , Heterocyclic Compounds, 4 or More Rings/pharmacology , Humans , Ligands , Magnetic Resonance Spectroscopy , Models, Molecular , Molecular Structure , Piperazines/pharmacology , Protein Binding , Radioligand Assay , Structure-Activity Relationship
16.
J Med Chem ; 46(13): 2572-9, 2003 Jun 19.
Article in English | MEDLINE | ID: mdl-12801221

ABSTRACT

We have created quantitative structure-activity relationship (QSAR) models describing the interaction of a series of 54 organic compounds with four melanocortin (MC) receptor subtypes, MC(1), MC(3), MC(4), and MC(5). In addition to traditional QSAR analysis, we applied our recently developed proteo-chemometrics approach. Proteo-chemometrics is based on the combined analysis of series of receptors and ligands, wherein descriptions of ligands, proteins, and so-called ligand-protein cross-terms are correlated with interaction activities. The compounds were characterized by structural descriptors, including three-dimensional grid-independent descriptors (GRINDs), topological descriptors, and geometrical descriptors. Description of receptors was obtained by computing the receptors' amino acid sequence identities. Both the QSAR and proteo-chemometrics approaches resulted in models with essentially the same statistical significance: the cross-validated correlation coefficient q(2) for the proteo-chemometric model being 0.71, while for the QSAR models the q(2)s were 0.75, 0.68, 0.63, and 0.71 for the MC(1), MC(3)(-)(5) receptor, respectively. However, the proteo-chemometrics modeling provided more detailed information about receptor-ligand interactions and determinants for receptor subtype selectivity than did QSAR.


Subject(s)
Organic Chemicals/chemistry , Quantitative Structure-Activity Relationship , Receptors, Corticotropin/chemistry , Models, Molecular , Naphthalenes/chemistry , Proteomics , Receptors, Melanocortin
17.
Biochem Biophys Res Commun ; 301(2): 399-405, 2003 Feb 07.
Article in English | MEDLINE | ID: mdl-12565874

ABSTRACT

We synthesized a new series of small cyclic melanocyte-stimulating hormone (MSH) analogues and screened them for binding affinity at the four MSH binding melanocortin (MC) receptors. We identified a novel substance HS131, with about 20-fold higher affinity for the MC4 receptor than the MC3 receptor. This substance proved to be antagonist for all the four MC receptors in a cAMP assay. HS131 is a six amino acid long peptide, has a molecular weight below 1000, and has only two amino acids in common with the natural MSH peptides. HS131 potently and dose dependently increased food intake after i.c.v. administration. Moreover, s.c. administration of HS131 (1.0 mg/kg) increased food intake, suggesting that HS131 may be able to pass the blood brain barrier. This cyclic low molecular weight peptidomimetic will enable studies of the functional role of the MC4 receptors by peripheral administration and it may be used as a template for further development of low molecular weight substances for the MC receptors.


Subject(s)
Eating , Melanocyte-Stimulating Hormones/chemistry , Peptides, Cyclic/metabolism , Peptides/metabolism , Receptors, Corticotropin/antagonists & inhibitors , Animals , Cyclic AMP/metabolism , Humans , Ligands , Molecular Structure , Molecular Weight , Peptides/administration & dosage , Peptides/chemical synthesis , Peptides/chemistry , Peptides, Cyclic/administration & dosage , Peptides, Cyclic/chemical synthesis , Peptides, Cyclic/chemistry , Rats , Rats, Wistar , Receptor, Melanocortin, Type 4 , Receptors, Corticotropin/metabolism
18.
J Comb Chem ; 5(1): 1-7, 2003.
Article in English | MEDLINE | ID: mdl-12523828

ABSTRACT

A method has been developed for generating nonrandom peptide libraries on cotton. Disks of cotton fabric were chemically modified to enable peptide synthesis. Incorporation of a 6-aminocaproic acid residue handle on the cellulose turned out to be advantageous. Disks were labeled with silver ink, stacked one on top of another in a continuous flow peptide synthesizer column, and simultaneously subjected to automated synthesis procedures. Depending on the sequences to be synthesized, the automatic synthesis procedure was stopped, and the disks were removed from the column, sorted, and reapplied to subsequent synthesis steps. In this way, individual peptides could be easily prepared in milligram quantities on each of the cotton disks.


Subject(s)
Cotton Fiber , Peptide Library , Automation/instrumentation , Automation/methods , Combinatorial Chemistry Techniques/instrumentation , Combinatorial Chemistry Techniques/methods , Peptides/chemical synthesis
19.
Bioorg Med Chem Lett ; 12(18): 2627-33, 2002 Sep 16.
Article in English | MEDLINE | ID: mdl-12182875

ABSTRACT

The novel amide linked angiotensin II (ANG II) cyclic analogues: gamma, epsilon -cyclo(3, 5)-[Sar(1)-Glu(3)-Lys(5)-Ile(8)] ANG II (I) and gamma, epsilon -cyclo(3, 5)-[Sar(1)-Glu(3)-Lys(5)-Phe(8)] ANG II (II) have been designed, synthesized and bioassayed in anesthetized rabbits in order to unravel structural ring cluster characteristics important for receptor activation. Analogue I with Ile at position 8 was an inhibitor of Angiotensin II while analogue II with Phe at position 8 was found to be an agonist. Similar results were reported for cyclic compounds that have reversed the linking between positions 3 and 5. The overall results show that positions 3 and 5 do not govern the biological activity of the synthetic analogues. It also appears that the aromatic ring cluster (Tyr-His-Phe) in agonist peptides is an essential stereo-electronic feature for Angiotensin II to exert its biological activity. A non-peptide mimetic of ANG II, 1-[2'-[(N-benzyl)tetrazol-5-yl]biphenyl-4-yl]methyl]-2-hydroxymethylbenzimidazole (BZI8) has been designed and synthesized. This molecule is more rigid and much less active than AT(1) non-peptide mimetic losartan probably because it lacks to mimic the orientation of tetrazole and the pharmacophore segments of butyl chain and imidazole ring.


Subject(s)
Angiotensin II/analogs & derivatives , Drug Design , Peptides, Cyclic/pharmacology , Angiotensin II/chemistry , Angiotensin II/pharmacology , Animals , Models, Molecular , Peptides, Cyclic/chemistry , Rabbits , Structure-Activity Relationship
20.
Bioorg Med Chem Lett ; 12(7): 1035-8, 2002 Apr 08.
Article in English | MEDLINE | ID: mdl-11909711

ABSTRACT

Presumed pharmacophoric groups of melanocortin peptides (naphthalene, amino or guanidine, and indole moieties) were combined in mimetics molecules looking for their favorable location for activity at melanocortin (MC) receptors. Twenty-two compounds were prepared and tested. The best of these displayed micromolar affinities for the MC receptors.


Subject(s)
Indoles/metabolism , Naphthalenes/metabolism , Receptors, Corticotropin/metabolism , Amination , Binding, Competitive , Cell Line , Humans , Indoles/chemistry , Iodine Radioisotopes , Models, Chemical , Molecular Structure , Naphthalenes/chemistry , Oxidation-Reduction , Peptides/chemical synthesis , Protein Binding , Receptor, Melanocortin, Type 3 , Receptor, Melanocortin, Type 4 , Receptors, Corticotropin/agonists , Receptors, Melanocortin
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