Your browser doesn't support javascript.
loading
Show: 20 | 50 | 100
Results 1 - 20 de 21
Filter
1.
Sci Rep ; 14(1): 2582, 2024 01 31.
Article in English | MEDLINE | ID: mdl-38297140

ABSTRACT

The usage of a tablet-based language-independent self-test involving the recognition of ecological sounds in background noise, the Sound Ear Check, was investigated. The results of 692 children, aged between 5 and 9 years and 4 months, recruited in seven different countries, were used to analyze the validity and the cultural independence of test. Three different test procedures, namely a monaural adaptive procedure, a procedure presenting the sounds dichotically in diotic noise, and a procedure presenting all the sounds with a fixed signal-to-noise ratio and a stopping rule were studied. Results showed high sensitivity and specificity of all three procedures to detect conductive, sensorineural and mixed hearing loss > 30 dB HL. Additionally, the data collected from different countries were consistent, and there were no clinically relevant differences observed between countries. Therefore, the Sound Ear Check can offer an international hearing screening test for young children at school entry, solving the current lack of hearing screening services on a global scale.


Subject(s)
Hearing Loss , Speech Perception , Child , Humans , Child, Preschool , Infant , Self-Testing , Hearing , Hearing Loss/diagnosis , Language , Schools
2.
Ear Hear ; 44(6): 1498-1506, 2023.
Article in English | MEDLINE | ID: mdl-37340534

ABSTRACT

OBJECTIVES: Self-assessment instruments are commonly used in audiological rehabilitation. However, several studies highlight the lack of multidimensionality in existing outcome measures, with the consequence that they only partially capture aspects of functioning in everyday life for people living with hearing loss. This study aimed to develop and investigate the content validity of a self-assessment instrument based on the validated Brief International Classification of Functioning, Disability, and Health Core Set for Hearing Loss. DESIGN: The design was a two-part instrument development study. The first part focused on the item-generation process of the instrument, named the Hearing and Functioning in Everyday Life Questionnaire (HFEQ) during an experts' workshop. The second part focused on international content validation of the instrument using group interviews. Strategic sampling was used and 30 adults with hearing loss from India, South Africa, and the United States participated in the group interviews. RESULTS: The expert's workshop resulted in the first version of the HFEQ containing 30 items. The results from group interviews show that the content of the HFEQ was considered to be valid concerning its relevance, comprehensiveness, and comprehensibility. A majority (73%) of the HFEQ items were perceived by the participants as relevant and easy to comprehend. For the remaining 27% of the items, the content was perceived to be relevant in all countries, but some terms and expressions were reported to require rewording or clearer examples. These modifications will be made in the next step of the development process. CONCLUSION: Content validation of the HFEQ demonstrates promising results, with participants perceiving the content as relevant and comprehensible. Further psychometric validation is required to investigate other psychometric properties, such as construct validity and reliability. The HFEQ has the potential to become a valuable new instrument for assessing everyday functioning in people with hearing loss in audiological rehabilitation and in research.


Subject(s)
Deafness , Hearing Loss , Adult , Humans , Reproducibility of Results , Surveys and Questionnaires , Psychometrics , Hearing , Disability Evaluation
3.
Curr Protoc ; 1(6): e150, 2021 Jun.
Article in English | MEDLINE | ID: mdl-34101384

ABSTRACT

Glycans (oligosaccharide chains attached to glycoproteins) are a promising class of biomarkers, found in body fluids such as serum, saliva, urine, etc., that can be used for the diagnosis of disease conditions. Subtle changes in glycans resulting from altered glycosylation machinery have been reported during various diseases, including carcinogenesis. In this article, we detail protocols for the rapid, label-free analysis of glycans using a previously developed highly sensitive and selective electrochemical impedance spectroscopy-based biosensing diagnostic platform called "NanoMonitor." The glycosensor operation is based on the specific affinity capture of the target glycans on the sensor surface by glycan-binding proteins known as lectins. This glycan-lectin binding activity modulates the impedance of the electrical double layer at the buffer-electrode interface. Protocols for the preparation of glycoprotein samples and glycosylation analysis using NanoMonitor and lectin-based ELISA are described here. The data obtained using these protocols show that NanoMonitor is capable of distinguishing between glycoform variants of the glycoprotein fetuin and glycoproteins derived from cultured human pancreatic cancer cells with high sensitivity (orders of magnitude higher than lectin-based ELISA) and selectivity. The results obtained indicate that NanoMonitor protocols can be further developed to enable use of NanoMonitor as a handheld electronic biosensor device for routine multiplexed detection of glycan biomarkers from clinical samples. © 2021 Wiley Periodicals LLC. Basic Protocol 1: Preparing the NanoMonitor surface for glycan biosensing Support Protocol: Synthesis of glycoform variants of fetuin Basic Protocol 2: Performing Electrochemical Impedance Spectroscopy (EIS) for analyzing glycoprotein structures.


Subject(s)
Biosensing Techniques , Dielectric Spectroscopy , Glycosylation , Humans , Lectins , alpha-Fetoproteins
4.
J Am Acad Audiol ; 31(9): 636-645, 2020 10.
Article in English | MEDLINE | ID: mdl-33225432

ABSTRACT

BACKGROUND: Increasingly, people access Internet-based health information about various chronic conditions including hearing loss and hearing aids. YouTube is one media source that has gained much popularity in recent years. PURPOSE: The current study examines the source, content, understandability, and actionability of YouTube videos related to hearing aids. RESEARCH DESIGN: Cross-sectional design by analyzing the videos at single point in time. STUDY SAMPLE: One hundred most frequently viewed videos in YouTube. INTERVENTION: Not applicable. DATA COLLECTION AND ANALYSIS: The 100 most-viewed English language videos targeting individuals seeking information regarding hearing aids were identified and manually coded. Data collection included general information about the video (e.g., source, title, authorship, date of upload, duration of video), popularity-driven measures (e.g., number of views, likes, dislikes), and the video source (consumer, professional, or media). The video content was analyzed to examine what pertinent information they contained in relation to a predetermined fact sheet. Understandability and actionability of the videos were examined using the Patient Education Material Assessment Tool for Audiovisual Materials. RESULTS: Of the 100 most-viewed videos, 11 were consumer-based, 80 were created by professionals, and the remaining 9 were media-based. General information about hearing aids, hearing aid types, and handling and maintenance of hearing aids were the most frequently discussed content categories with over 50% of all videos commenting on these areas. Differences were noted between source types in several content categories. The overall understandability scores for videos from all sources were 74%, which was considered adequate; however, the actionability scores for all the videos were 68%, which is considered inadequate. CONCLUSION: YouTube videos about hearing aids focused on a range of issues and some differences were found between source types. The poor actionability of these videos may result in incongruous consumer actions. Content and quality of the information in hearing aid YouTube videos needs to be improved with input from professionals.


Subject(s)
Hearing Aids , Hearing Loss , Social Media , Cross-Sectional Studies , Humans , Video Recording
5.
J Pharm Sci ; 104(10): 3510-23, 2015 Oct.
Article in English | MEDLINE | ID: mdl-26108889

ABSTRACT

There is a great need for effective protection against cutaneous pathologies arising from chronic exposure to harmful solar UVB radiations. A promising pharmaceutical strategy to improve the efficacy of chemotherapeutic/preventative natural compounds (e.g., soy isoflavone Genistein, Gen) is to enhance their dermal delivery using nanoemulsion (NE) formulations. This report investigates the development of nanoemulsified tocotrienol(T3)-rich fraction of red palm oil (Tocomin®), to yield an optimal NE delivery system for dermal photoprotection (z-average size <150 nm, ζ-potential ≈ -30 mV, polydispersity index < 0.25). Physicochemical characterization and photostability studies indicate NE formulations utilizing surfactant mixture (Smix) of Solutol® HS-15 (SHS15) blended with vitamin E TPGS (TPGS) as cosurfactant was significantly superior to formulations that utilized Lutrol® F68 (LF68) as the cosurfactant. A ratio of 60:40 of SHS15-TPGS-NE was further identified as lead Tocomin® NE topical platform using in vitro pharmaceutical skin reactivity studies that assess cutaneous irritancy and cytotoxicity. Prototype Tocomin® NE loaded with the antiphotocarcinogenic molecule Gen (Gen-Tocomin® NE) showed slow-release profile in both liquid and cream forms. Gen-Tocomin® NE also showed excellent biocompatibility, and provided substantial UVB protection to cultured subcutaneous L929 fibroblasts, indicating the great potential of our Tocomin® NE warranting further prototype development as topical pharmaceutical platform for skin photoprotection applications.


Subject(s)
Genistein/administration & dosage , Skin Aging/drug effects , Skin Aging/radiation effects , Vitamin E/administration & dosage , Animals , Anticarcinogenic Agents/pharmacology , Cell Survival/drug effects , Chemistry, Pharmaceutical , Dogs , Drug Delivery Systems , Drug Stability , Emulsions , Madin Darby Canine Kidney Cells , Mice , Nanostructures , Palm Oil , Pharmaceutical Vehicles , Plant Oils , Skin Neoplasms/prevention & control , Surface-Active Agents , Ultraviolet Rays , Vitamin E/chemistry
6.
Environ Sci Process Impacts ; 16(1): 135-40, 2014 Jan.
Article in English | MEDLINE | ID: mdl-24276544

ABSTRACT

Effective real-time monitoring is the key to understanding and tackling the issue of pharmaceutical contamination of water. This research demonstrates the utility of an alumina nanochannel-based electrochemical sensor platform for the detection of ibuprofen in water derived from various sources. Our results indicate that the sensor is highly sensitive with a limit of detection at 0.25 pg mL(-1). The novel sensor described here has potential for application as a simple, rapid, inexpensive and highly reliable method for real-time environmental water quality assessment.


Subject(s)
Environmental Monitoring/instrumentation , Pharmaceutical Preparations/analysis , Water Pollutants, Chemical/analysis , Electrochemical Techniques , Environmental Monitoring/methods
7.
Int Tinnitus J ; 18(2): 115-21, 2013.
Article in English | MEDLINE | ID: mdl-25773102

ABSTRACT

OBJECTIVE: The aim of the present study was to examine whether perceived tinnitus severity changes over time, and if so what factors contribute to this change. DESIGN: A modified Swedish version of tinnitus severity questionnaire (MS-TSQ) was used to examine changes in tinnitus severity over a period of time. STUDY SAMPLE: The MS-TSQ questionnaire was completed by 455 subjects visiting an Ear, Nose and Throat (ENT) clinic in Sweden as part of baseline assessment (Sb). The same questionnaire was completed during follow-up assessment (Sf) by 174 of these subjects to examine changes in tinnitus severity, if any. The difference in scores obtained from the two assessments was calculated and was termed as difference scores (Sd). RESULTS: RESULTS of analyses of variance (ANOVA) indicated significant reduction in tinnitus severity from Sb to Sf scores (p < 0.001). Subjects with noise induced hearing loss showed significantly lower Sd scores than subjects with unspecified sensorineural hearing loss (p < 0.01). The group who received psychological treatment for tinnitus obtained significantly higher Sd than those who did not (p < 0.01). CONCLUSIONS: RESULTS provide valuable framework for understanding the factors that affect tinnitus severity over a period of time.

8.
Nat Chem ; 4(10): 846-53, 2012 Oct.
Article in English | MEDLINE | ID: mdl-23000999

ABSTRACT

Membrane proteins mediate a variety of cellular responses to extracellular signals. Although membrane proteins are studied intensively for their values as disease biomarkers and therapeutic targets, in situ investigation of the binding kinetics of membrane proteins with their ligands has been a challenge. Traditional approaches isolate membrane proteins and then study them ex situ, which does not reflect accurately their native structures and functions. We present a label-free plasmonic microscopy method to map the local binding kinetics of membrane proteins in their native environment. This analytical method can perform simultaneous plasmonic and fluorescence imaging, and thus make it possible to combine the strengths of both label-based and label-free techniques in one system. Using this method, we determined the distribution of membrane proteins on the surface of single cells and the local binding kinetic constants of different membrane proteins. Furthermore, we studied the polarization of the membrane proteins on the cell surface during chemotaxis.


Subject(s)
Membrane Proteins/metabolism , Cell Line , Cell Movement , Glycoproteins/chemistry , Glycoproteins/metabolism , Humans , Kinetics , Lectins/chemistry , Lectins/metabolism , Membrane Proteins/chemistry , Protein Binding , Protein Interaction Mapping , Surface Plasmon Resonance
9.
J Lab Autom ; 16(2): 126-33, 2011 Apr.
Article in English | MEDLINE | ID: mdl-21609693

ABSTRACT

Antibody microarrays are gaining popularity as a high-throughput technology to investigate the proteome. However, protein extracts from most body fluid or biopsy samples are available in very small volumes and are often unsuitable for large-scale antibody microarray studies. To demonstrate the potential for protein analysis with as little as a few nanoliters of sample, we have developed a new technology called NanoProbeArrays based on piezoelectric liquid dispensing for non-contact printing and probing of antibody arrays. Instead of flooding the protein sample on the antibody microarray surface, as in conventional microarray screening, a piezoelectric inkjet printer is used to dispense nanoliters of fluorescently labeled proteins over the antibody spots on the array. The ability of NanoProbeArrays to precisely identify and reliably distinguish between test proteins from different sources, without any loss of sensitivity and specificity as compared with conventional antibody microarrays, is illustrated here. The utility of NanoProbeArrays for biomarker identification in a complex biological sample was tested by detecting the cytokine interleukin-4 in serum. The significant reduction in volume of sample during NanoProbeArray analysis, as compared with conventional antibody microarrays, offers new opportunities for basic and applied proteomic research.


Subject(s)
Protein Array Analysis/methods , Proteins/analysis , Proteomics/methods , Specimen Handling/methods , Biomarkers/analysis , Nanotechnology/methods
10.
Nat Chem ; 3(3): 249-55, 2011 Mar.
Article in English | MEDLINE | ID: mdl-21336333

ABSTRACT

Electrochemical impedance spectroscopy is a crucial tool for the detection and study of various biological substances, from DNA and proteins to viruses and bacteria. It does not require any labelling species, and methods based on it have been developed to study cellular processes (such as cell spreading, adhesion, invasion, toxicology and mobility). However, data have so far lacked spatial information, which is essential for investigating heterogeneous processes and imaging high-throughput microarrays. Here, we report an electrochemical impedance microscope based on surface plasmon resonance that resolves local impedance with submicrometre spatial resolution. We have used an electrochemical impedance microscope to monitor the dynamics of cellular processes (apoptosis and electroporation of individual cells) with millisecond time resolution. The high spatial and temporal resolution makes it possible to study individual cells, but also resolve subcellular structures and processes without labels, and with excellent detection sensitivity (~2 pS). We also describe a model that simulates cellular and electrochemical impedance microscope images based on local dielectric constant and conductivity.


Subject(s)
Electrochemical Techniques , Microscopy/methods , Single-Cell Analysis/methods , Surface Plasmon Resonance/methods , Apoptosis , Cell Line, Tumor , Cell Physiological Phenomena , Electrodes , Electroporation , Gold/chemistry , Humans , Microscopy, Electron , Surface Properties
11.
Biochem Biophys Res Commun ; 405(1): 1-6, 2011 Feb 04.
Article in English | MEDLINE | ID: mdl-21167816

ABSTRACT

In this study we investigated E6 and E7 oncogenes from the Human Papilloma Virus as targets for siRNA knockdown in order to boost the efficacy of the anti-cancer drug 'tumor necrosis factor-related apoptosis inducing ligand' (TRAIL). SiHa cells were treated with TRAIL following transfection with E6/E7 siRNA and the expression of death receptors DR4 and DR5, cell viability, apoptosis, senescence and cell cycle analysis were undertaken using flow cytometry, MTT viability assay and cellular ß-galactosidase activity assays. E6/E7 siRNA resulted in significant upregulation of death receptors DR4 and DR5 but did not result in an enhanced sensitivity to TRAIL. Our results indicate that E6/E7-siRNA induces senescence rather than apoptosis in SiHa cells. The occurrence of senescence in drug resistant cervical cancer cells such as the SiHa cell line by E6/E7 siRNA, among other factors, may prevent TRAIL induced activation of extrinsic and intrinsic pathways that lead to apoptotic cell death. Our findings are significant for combinatorial strategies for cancer therapy since the induction of senescence can preclude apoptosis rendering cells to be recalcitrant to TRAIL treatment.


Subject(s)
Drug Resistance, Neoplasm/genetics , Gene Knockdown Techniques , Human papillomavirus 16 , Oncogene Proteins, Viral/antagonists & inhibitors , Papillomavirus E7 Proteins/antagonists & inhibitors , Papillomavirus Infections/therapy , Repressor Proteins/antagonists & inhibitors , TNF-Related Apoptosis-Inducing Ligand/therapeutic use , Uterine Cervical Neoplasms/therapy , Cell Line, Tumor , Cellular Senescence/genetics , Female , Humans , Oncogene Proteins, Viral/genetics , Papillomavirus E7 Proteins/genetics , Papillomavirus Infections/drug therapy , RNA, Small Interfering/genetics , Repressor Proteins/genetics , Transfection , Uterine Cervical Neoplasms/drug therapy
12.
Nanomedicine (Lond) ; 5(3): 369-78, 2010 Apr.
Article in English | MEDLINE | ID: mdl-20394531

ABSTRACT

AIM: The goal of our research is to develop an ultrasensitive diagnostic platform called 'NanoMonitor' to enable rapid label-free analysis of a highly promising class of biomarkers called glycans (oligosaccharide chains attached to proteins) with high sensitivity and selectivity. The glycosylation of fetuin - a serum protein - and extracts from a human pancreatic cancer line was analyzed to demonstrate the capabilities of the NanoMonitor. MATERIAL & METHODS: The NanoMonitor device consists of a silicon chip with an array of gold electrodes forming multiple sensor sites and works on the principle of electrochemical impedance spectroscopy. Each sensor site is overlaid with a nanoporous alumina membrane that forms a high density of nanowells on top of each electrode. Lectins (proteins that bind to and recognize specific glycan structures) are conjugated to the surface of the electrode. When specific glycans from a test sample bind to lectins at the base of each nanowell, a perturbation of electrical double-layer occurs, which results in a change in the impedance. Using the lectins Sambucs nigra agglutinin (SNA) and Maackia amurensis agglutinin (MAA), subtle variations to the glycan chains of fetuin were investigated. Protein extracts from BXPC-3, a cultured human pancreatic cancer cell line were also analyzed for binding to SNA and MAA lectins. The performance of the NanoMonitor was compared to a conventional laboratory technique: lectin-based enzyme linked immunosorbent assay (ELISA). RESULTS & DISCUSSION: The NanoMonitor was used to identify glycoform variants of fetuin and global differences in glycosylation of protein extracts from cultured human pancreatic cancerous versus normal cells. While results from NanoMonitor correlate very well with results from lectin-based ELISA, the NanoMonitor is rapid, completely label free, requires just 10 microl of sample, is approximately five orders of magnitude more sensitive and highly selective over a broad dynamic range of glycoprotein concentrations. CONCLUSION: Based on its performance metrics, the NanoMonitor has excellent potential for development as a point-of-care handheld electronic biosensor device for routine detection of glycan biomarkers from clinical samples.


Subject(s)
Biomarkers/chemistry , Biosensing Techniques/instrumentation , Electrochemistry/instrumentation , Nanotechnology/instrumentation , Polysaccharides/analysis , Proteins/chemistry , Biomarkers/metabolism , Biosensing Techniques/methods , Cell Line, Tumor , Electrochemistry/methods , Equipment Design , Glycosylation , Humans , Lectins/chemistry , Lectins/metabolism , Nanotechnology/methods , Polysaccharides/metabolism , Proteins/metabolism , Sensitivity and Specificity , alpha-Fetoproteins/analysis , alpha-Fetoproteins/metabolism
13.
PLoS One ; 4(8): e6605, 2009 Aug 12.
Article in English | MEDLINE | ID: mdl-19672308

ABSTRACT

External sugar initiates biosynthesis of the reserve carbohydrate fructan, but the molecular processes mediating this response remain obscure. Previously it was shown that a phosphatase and a general kinase inhibitor hamper fructan accumulation. We use various phosphorylation inhibitors both in barley and in Arabidopsis and show that the expression of fructan biosynthetic genes is dependent on PP2A and different kinases such as Tyr-kinases and PI3-kinases. To further characterize the phosphorylation events involved, comprehensive analysis of kinase activities in the cell was performed using a PepChip, an array of >1000 kinase consensus substrate peptide substrates spotted on a chip. Comparison of kinase activities in sugar-stimulated and mock(sorbitol)-treated Arabidopsis demonstrates the altered phosphorylation of many consensus substrates and documents the differences in plant kinase activity upon sucrose feeding. The different phosphorylation profiles obtained are consistent with sugar-mediated alterations in Tyr phosphorylation, cell cycling, and phosphoinositide signaling, and indicate cytoskeletal rearrangements. The results lead us to infer a central role for small GTPases in sugar signaling.


Subject(s)
Carbohydrates/pharmacology , Fructans/biosynthesis , GTP Phosphohydrolases/metabolism , Signal Transduction , Arabidopsis/drug effects , Arabidopsis/enzymology , Arabidopsis/metabolism , Phosphorylation , Protein Kinase Inhibitors/pharmacology , Protein Kinases/metabolism , Substrate Specificity
14.
J Plant Physiol ; 166(3): 219-32, 2009 Feb 15.
Article in English | MEDLINE | ID: mdl-18639953

ABSTRACT

Mucin-type O-glycosylation has been well characterized in mammalian systems but not in plants. In this study, the purified alcohol-soluble, non-reduced protein (prolamin) fraction from rice seed was investigated for the occurrence of O-linked oligosaccharides. As storage prolamins are unlikely to be O-glycosylated, any O-glycosylation found was likely to belong to co-extracted proteins, whether because of association with the protein body or solubility. SDS-PAGE and MS analyses revealed 14 and 16kDa protein families in fractions that bound to the lectins peanut agglutinin (PNA), Vicia villosa lectin (VVL) and Jacalin, indicative of the presence of O-linked saccharides. Enzymatic cleavage, fluorescent labeling and high-performance liquid chromatography (HPLC) analysis demonstrated a peak consistent with Gal-beta-(1-->3)-GalNAc, with similar MS/MS fragmentation. Additionally, upon chemical analysis, a GlcNAc-containing O-linked carbohydrate moiety was discovered. Protein blotting with anti-O-GlcNAc antibody (clone CTD110.6) was positive in a subpopulation of the 14kDa alcohol-soluble protein fraction, but a hot capping experiment was negative. Therefore, the GlcNAc residue in this case is unlikely to be terminal. Additionally, a positive reaction with CTD110.6mAb cannot be taken as absolute proof of O-GlcNAc modification and further confirmatory experiments should be employed. We hypothesize that O-glycosylation may contribute to protein functionality or regulation. Further investigation is required to identify the specific proteins with these modifications. This 'reverse' approach could lead to the identification of proteins involved in mRNA targeting, signaling, translation, anchoring or maintenance of translational quiescence and may be applied to germinating rice seed extracts for further elucidation of protein function and regulation.


Subject(s)
Alcohols/chemistry , Oryza/chemistry , Plant Proteins/chemistry , Plant Proteins/isolation & purification , Amino Acid Sequence , Antigens/metabolism , Biological Assay , Biotinylation , Blotting, Western , Chromatography, High Pressure Liquid , Chromatography, Ion Exchange , Conserved Sequence , Glucosamine/metabolism , Glycosylation , Molecular Sequence Data , Molecular Weight , Monosaccharides/analysis , Oryza/metabolism , Plant Lectins/metabolism , Plant Proteins/metabolism , Prolamins/metabolism , Protein Binding , Protein Structure, Tertiary , Reproducibility of Results , Solubility , Spectrometry, Mass, Matrix-Assisted Laser Desorption-Ionization
15.
Biochem Biophys Res Commun ; 375(4): 526-30, 2008 Oct 31.
Article in English | MEDLINE | ID: mdl-18718447

ABSTRACT

Glycans have great potential as disease biomarkers and therapeutic targets. However, the major challenge for glycan biomarker identification from clinical samples is the low abundance of key glycosylated proteins. To demonstrate the potential for glycan analysis with nanoliter amounts of glycoprotein, we have developed a new technology (Lectin NanoProbeArray) based on piezoelectric liquid dispensing for non-contact printing and probing of a lectin array. Instead of flooding the glycoprotein probe on the lectin array surface, as in conventional microarray screening, a piezoelectric printer is used to dispense nanoliters of fluorescently labeled glycoprotein probe over the lectin spots on the array. As a proof-of-concept, the ability of Lectin NanoProbeArrays to precisely identify and reliably distinguish between the closely related glycoforms of fetuin is illustrated here. Sensitivity levels comparable to lectin arrays that use evanescent-field scanners was achieved along with several orders of magnitude reduction in the amount of probe required for glycosylation analysis.


Subject(s)
Glycoproteins/analysis , Lectins/chemistry , Nanostructures/chemistry , Nanotechnology/methods , Polysaccharides/analysis , Biomarkers/analysis , Fluorescent Dyes/chemistry , Glycosylation , Printing
16.
Plant Physiol Biochem ; 45(6-7): 410-9, 2007.
Article in English | MEDLINE | ID: mdl-17482472

ABSTRACT

Sucrose (Suc) can influence the expression of a large number of genes and thereby regulates many metabolic and developmental processes. However, the Suc sensing and the components of the ensuing signaling transduction pathway leading to the regulation of gene expression are not fully understood. We have shown that protein kinases and phosphatases are involved in the Suc induced expression of fructosyltransferase (FT) genes and fructan accumulation by an hexokinase independent pathway in wheat (Triticum aestivum). In the present study, using an RT-PCR based strategy, we have cloned a calcium-dependent protein kinase (TaCDPK1) cDNA that is upregulated during Suc treatment of excised wheat leaves. The deduced amino-acid sequence of CDPK1 has high sequence similarity (>70%) to known CDPKs from both monocots and dicots. Based on sequence homology, TaCDPK1 sequence shows a variable domain preceding a catalytic domain, an autoinhibitory function domain, and a C-terminal calmodulin-domain containing 4 EF-hand calcium-binding motifs, along with a N-myristoylation motif in the N-terminal variable domain. The recombinant Escherichia coli expressed TaCDPK1 was able to phosphorylate histone III-S in a calcium dependent manner in in vitro assays. The TaCDPK1 gene expression, as determined by quantitative RT-PCR, is induced by Suc and this effect is repressed by the inhibitors of the putative components of the Suc signal transduction pathway (calcium, Ser/Thr protein kinases and protein phosphatases). We propose that TaCDPK1 is involved in the Suc induced signaling pathway in wheat leaves.


Subject(s)
Calcium-Binding Proteins/genetics , Gene Expression Regulation, Enzymologic/drug effects , Gene Expression Regulation, Plant/drug effects , Plant Leaves/enzymology , Plant Proteins/genetics , Protein Kinases/genetics , Sucrose/pharmacology , Triticum/enzymology , Amino Acid Sequence , Calcium-Binding Proteins/metabolism , Cloning, Molecular , Conserved Sequence , DNA Primers , DNA, Complementary/genetics , DNA, Plant/chemistry , DNA, Plant/genetics , Escherichia coli/genetics , Molecular Sequence Data , Phylogeny , Plant Proteins/metabolism , Protein Kinases/metabolism , Recombinant Proteins/metabolism , Signal Transduction/drug effects , Transcription, Genetic , Triticum/drug effects , Triticum/physiology
17.
Planta ; 225(1): 183-91, 2006 Dec.
Article in English | MEDLINE | ID: mdl-16835761

ABSTRACT

The role of Ca(2+) in the induction of enzymes involved in fructan synthesis (FSS) mediated by sucrose was studied in wheat (Triticum aestivum). Increase of FSS enzyme activity and induction of the expression of their coding genes by sucrose were inhibited in leaf blades treated with chelating agents (EDTA, EGTA and BAPTA). Ca(2+) channel blockers (lanthanum chloride and ruthenium red) also inhibited the FSS response to sucrose, suggesting the participation of Ca(2+) from both extra- and intra- cellular stores. Sucrose induced a rapid Ca(2+) influx into the cytosol in wheat leaf and root tissues, shown with the Ca(2+ )sensitive fluorescent probe Fluo-3/AM ester. Our results support the hypothesis that calcium is a component of the sucrose signaling pathway that leads to the induction of fructan synthesis.


Subject(s)
Calcium/physiology , Fructans/metabolism , Sucrose/metabolism , Triticum/metabolism , Calcium/metabolism , Calcium Signaling/drug effects , Carbohydrate Metabolism/genetics , Carbohydrate Metabolism/physiology , Cytosol/metabolism , Egtazic Acid/analogs & derivatives , Egtazic Acid/pharmacology , Gene Expression Regulation, Plant/drug effects , Microscopy, Fluorescence , Plant Leaves/genetics , Plant Leaves/metabolism , Plant Proteins/genetics , Plant Proteins/metabolism , Plant Roots/genetics , Plant Roots/metabolism , Triticum/genetics
18.
J Exp Bot ; 57(1): 213-23, 2006.
Article in English | MEDLINE | ID: mdl-16330524

ABSTRACT

Fructans, beta2-1 and/or beta2-6 linked polymers of fructose, are produced by fructosyltransferases (FTs) from sucrose. They are important storage carbohydrates in many plants. Fructan reserves, widely distributed in plants, are believed to be mobilized via fructan exohydrolases (FEHs). The purification, cloning, and functional characterization of a 6-FEH from wheat (Triticum aestivum L.) are reported here. It is the first FEH shown to hydrolyse exclusively beta2-6 bonds found in a fructan-producing plant. The enzyme was purified to homogeneity using ammonium sulphate precipitation, ConA affinity-, ion exchange-, and size exclusion chromatography and yielded a single band of 70 kDa following SDS-PAGE. Sequence information obtained by mass spectrometry of in-gel trypsin digests demonstrated the presence of a single protein. Moreover, these unique peptide sequences, together with some ESTs coding for them, could be used in a RT-PCR based strategy to clone a 1.7 kb cDNA. Functionality tests of the cDNA performed after heterologous expression in the yeast Pichia pastoris showed--as did the native enzyme from wheat--a very high activity of the produced protein against bacterial levan, 6-kestose, and phlein whilst sucrose and inulin were not used as substrates. Therefore the enzyme is a genuine 6-FEH. In contrast to most FEHs from fructan-accumulating plants, this FEH is not inhibited by sucrose. The relative abundance of 6-FEH transcripts in various tissues of wheat was investigated using quantitative RT-PCR.


Subject(s)
Glycoside Hydrolases/isolation & purification , Triticum/enzymology , Amino Acid Sequence , Cloning, Molecular , Fructans/metabolism , Gene Expression , Glycoside Hydrolases/genetics , Glycoside Hydrolases/metabolism , Molecular Sequence Data , Phylogeny , Pichia/genetics , Sequence Analysis, Protein , Sequence Homology, Amino Acid
19.
Bioinformatics ; 21 Suppl 2: ii213-9, 2005 Sep 01.
Article in English | MEDLINE | ID: mdl-16204106

ABSTRACT

MOTIVATION: The current knowledge about biochemical networks is largely incomplete. Thus biologists constantly need to revise or extend existing knowledge. The revision and/or extension are first formulated as theoretical hypotheses, then verified experimentally. Recently, biological data have been produced in great volumes and in diverse formats. It is a major challenge for biologists to process these data to reason about hypotheses. Many computer-aided systems have been developed to assist biologists in undertaking this challenge. The majority of the systems help in finding 'pattern' in data and leave the reasoning to biologists. A few systems have tried to automate the reasoning process of hypothesis formation. These systems generate hypotheses from a knowledge base and given observations. A main drawback of these knowledge-based systems is the knowledge representation formalisms they use. These formalisms are mostly monotonic and are now known to be not quite suitable for knowledge representation, especially in dealing with the inherently incomplete knowledge about biochemical networks. RESULTS: We present a knowledge-based framework for hypothesis formation for biochemical networks. The framework has been implemented by extending BioSigNet-RR-a knowledge based system that supports elaboration-tolerant representation and non-monotonic reasoning. Features of the extended system are illustrated by a case study of the p53 signal network. AVAILABILITY: http://www.biosignet.org


Subject(s)
Algorithms , Artificial Intelligence , Biochemistry/methods , Models, Biological , Proteome/metabolism , Signal Transduction/physiology , Computer Simulation , Models, Chemical , Proteome/chemistry
20.
New Phytol ; 167(2): 557-70, 2005 Aug.
Article in English | MEDLINE | ID: mdl-15998406

ABSTRACT

Expression of Mtchit 3-3, a class III chitinase gene, is specifically induced by arbuscular mycorrhizal (AM) fungi in roots of the model legume Medicago truncatula and its transcripts accumulate in cells containing arbuscules. Agrobacterium rhizogenes-transformed roots and root-organ cultures of M. truncatula were used to study effects of Mtchit 3-3 on AM fungi. * This work provides evidence for enzymatic activity of the Mtchit 3-3 gene product and shows with promoter:gus fusions that a 2 kb fragment located 5' upstream from the translational start codon of Mtchit 3-3 is sufficient to confer arbuscule-dependent gene expression. By fusing the Mtchit 3-3 coding region to the CaMV 35S promoter the expression pattern was disrupted. Surprisingly, disruption stimulated spore germination of Glomus intraradices and Glomus constrictum, and in the case of G. intraradices resulted in a higher probability of root colonization and spore formation. However, no effect on the abundance of arbuscules within colonized roots became apparent. These observations demonstrate that disruption of the tight arbuscule-dependent expression pattern of Mtchit 3-3 has effects on the early interaction between roots and AM fungi.


Subject(s)
Chitinases/genetics , Genes, Fungal , Medicago truncatula/microbiology , Mycorrhizae/enzymology , Mycorrhizae/genetics , Base Sequence , Cloning, Molecular , DNA, Fungal/genetics , Gene Expression , Medicago truncatula/enzymology , Medicago truncatula/genetics , Molecular Sequence Data , Mycorrhizae/physiology , Phylogeny , Plant Roots/enzymology , Plant Roots/genetics , Plant Roots/microbiology , Plants, Genetically Modified , Promoter Regions, Genetic , Spores, Fungal
SELECTION OF CITATIONS
SEARCH DETAIL
...