Probing Isolated Water Molecules in Aqueous Acetonitrile Solutions Using Oxygen K-Edge X-ray Absorption Spectroscopy.

Oxygen K-edge X-ray absorption spectroscopy (XAS) of an aqueous acetonitrile solution exhibited a sharp peak at approximately 537 eV, which was similar to that of water vapor and was not observed in liquid water. The inner-shell spectra of isolated water molecules and water clusters of different sizes surrounded by acetonitrile molecules were obtained by extracting these water structures from the liquid structures of aqueous acetonitrile solutions, as calculated using molecular dynamics simulations. The sharp peak profiles of the O K-edge XAS spectra were derived not from water clusters but from isolated water molecules surrounded by acetonitrile molecules. The present study proposes that isolated water molecules are easily formed in aqueous acetonitrile solutions and that the electronic structures of the isolated water molecules can be analyzed using O K-edge XAS spectra, which separates the contributions of small water clusters.

Mechanism of poly(N-isopropylacrylamide) cononsolvency in aqueous methanol solutions explored via oxygen K-edge X-ray absorption spectroscopy.

The cononsolvency mechanism of poly(N-isopropylacrylamide) (PNIPAM), dissolving in pure methanol (MeOH) and water (H2O) but being insoluble in MeOH-H2O mixtures, was investigated by O K-edge X-ray absorption spectroscopy (XAS). The cononsolvency emerges from the aggregation of PNIPAM with MeOH clusters, leading to the collapse of the hydrophobic hydration of PNIPAM.

Experimental and Theoretical Study for Core Excitation of Firefly Luciferin in Carbon K-Edge Spectra.

Carbon (C) K-edge X-ray absorption spectra for firefly luciferin were measured and assigned using time-dependent density functional theoretical calculations for luciferin anion and dianion to elucidate the effect of hydroxy-group deprotonation. It was found that the C K-edge spectra for luciferin had four characteristic peaks. The effect of deprotonation of the hydroxy group appears in the energy difference of the first and second peaks of these spectra. This energy difference is 1.0 eV at pH 7 and 2.3 eV at pH 10. The deprotonation of the hydroxy group can be distinguished based on the soft X-ray absorption spectra.

Stacking of a Cofacially Stacked Iron Phthalocyanine Dimer on Graphite Achieved High Catalytic CH4 Oxidation Activity Comparable to That of pMMO.

Numerous biomimetic molecular catalysts inspired by methane monooxygenases (MMOs) that utilize iron or copper-oxo species as key intermediates have been developed. However, the catalytic methane oxidation activities of biomimetic molecule-based catalysts are still much lower than those of MMOs. Herein, we report that the close stacking of a µ-nitrido-bridged iron phthalocyanine dimer onto a graphite surface is effective in achieving high catalytic methane oxidation activity. The activity is almost 50 times higher than that of other potent molecule-based methane oxidation catalysts and comparable to those of certain MMOs, in an aqueous solution containing H2O2. It was demonstrated that the graphite-supported µ-nitrido-bridged iron phthalocyanine dimer oxidized methane, even at room temperature. Electrochemical investigation and density functional theory calculations suggested that the stacking of the catalyst onto graphite induced partial charge transfer from the reactive oxo species of the µ-nitrido-bridged iron phthalocyanine dimer and significantly lowered the singly occupied molecular orbital level, thereby facilitating electron transfer from methane to the catalyst in the proton-coupled electron-transfer process. The cofacially stacked structure is advantageous for stable adhesion of the catalyst molecule on the graphite surface in the oxidative reaction condition and for preventing decreases in the oxo-basicity and generation rate of the terminal iron-oxo species. We also demonstrated that the graphite-supported catalyst exhibited appreciably enhanced activity under photoirradiation owing to the photothermal effect.

Operando time-resolved soft x-ray absorption spectroscopy for photoexcitation processes of metal complexes in solutions.

Operando time-resolved soft x-ray absorption spectroscopy (TR-SXAS) is an effective method to reveal the photochemical processes of metal complexes in solutions. In this study, we have developed the TR-SXAS measurement system for observing various photochemical reactions in solutions by the combination of laser pump pulses with soft x-ray probe pulses from the synchrotron radiation. For the evaluation of the developed TR-SXAS system, we have measured nitrogen K-edge x-ray absorption spectroscopy (XAS) spectra of aqueous iron phenanthroline solutions during a photoinduced spin transition process. The decay process of the high spin state to the low spin state in the iron complex has been obtained from the ligand side by N K-edge XAS, and the time constant is close to that obtained from the central metal side by time-resolved Fe K-edge XAS in the previous studies.

Carbon K-edge x-ray absorption spectra of liquid alcohols from quantum chemical calculations of liquid structures obtained by molecular dynamics simulations.

For reproducing the carbon K-edge x-ray absorption spectra of liquid alcohols, inner-shell quantum chemical calculations based on the Hartree-Fock method were performed with the snapshots of the liquid structures obtained by molecular dynamics simulations. The C K-edge inner-shell spectrum of liquid ethanol (EtOH) was obtained by the summation of one thousand calculated spectra of EtOH molecules including neighbor EtOH molecules within the CH2-CH2 distance of 6 Å. For the C K-edge inner-shell spectrum of liquid methanol (MeOH), we have calculated one thousand spectra of MeOH molecules including neighbor MeOH molecules within the CH3-CH3 distance of 6 Å. The calculated C K-edge inner-shell spectra of liquid alcohols well reproduced the spectral shapes of the experimentally obtained x-ray absorption spectra and the spectral changes from gas to liquid phases.

Hydrophobic Cluster Formation in Aqueous Ethanol Solutions Probed by Soft X-ray Absorption Spectroscopy.

Hydrophobic cluster structures in aqueous ethanol solutions at different concentrations have been investigated by soft X-ray absorption spectroscopy (XAS). In the O K-edge XAS, we have found that hydrogen bond structures among water molecules are enhanced in the middle-concentration region by the hydrophobic interaction of the ethyl groups in ethanol. In the C K-edge XAS, the lower energy features arise from a transition from the terminal methyl C 1s electron to an unoccupied orbital of 3s Rydberg character, which is sensitive to the nearest-neighbor intermolecular interactions. From the comparison of C K-edge XAS with the inner-shell calculations, we have found that ethanol clusters are easily formed in the middle-concentration region due to the hydrophobic interaction of the ethyl group in ethanol, resulting in the enhancement of the hydrogen bond structures among water molecules. This behavior is different from aqueous methanol solutions, where the methanol-water mixed clusters are more predominant in the middle-concentration region due to the relatively weak hydrophobic interactions of the methyl group in methanol.

X-ray absorption spectra of aqueous cellobiose: Experiment and theory.

The hydration structure of cellulose is very important for understanding the hydrolysis of cellulose at the molecular level. In this paper, we report a joint experimental and theoretical study on x-ray absorption spectroscopy (XAS) of aqueous cellobiose, a disaccharide unit of cellulose. In the experimental part, high resolution measurements of the carbon K-edge XAS spectra were taken. In the theoretical part, ab initio molecular dynamics simulations and ensemble calculations of electronic excited states were performed to obtain the continuous XAS spectra. The XAS spectra were found to have three characteristic peaks at 289.3, 290.7, and 293.6 eV, each representing the absorption by carbon atoms of the alcohol group, the hemiacetal group, and both of these functional groups. It was found that the peak heights in the spectrum change considerably over the temperature range of 25-60 °C, which is a reflection of the number of hydrogen bonds between cellobiose and water. We suggest that this spectral change could be useful information for identifying the hydration of cellulose in various environments.

Solvent Effects in the Ultraviolet and X-ray Absorption Spectra of Pyridazine in Aqueous Solution.

Electrostatic interaction of the solvent with the solute and fluctuations of the solvent configurations may make excitation energies of the solute different from those in the gas phase. These effects may dominate photoinduced or chemical reaction dynamics in solution systems and can be observed as shifts or broadening of peaks in absorption spectra. In this work, the nitrogen K-edge X-ray absorption spectra were measured for pyridazine in the gas phase and in aqueous solution. The ultraviolet and X-ray absorption spectra of pyridazine in aqueous solution, as well as those in the gas phase, were then calculated with models based on the algebraic-diagrammatic construction through second order [ADC(2)] with the resolution-of-identity (RI) approximation and compared with the spectra obtained in experiments. For aqueous solution, explicit local solvation structures were extracted from an ab initio molecular dynamics (AIMD) trajectory of pyridazine in bulk water, and RI-ADC(2) was combined with the conductor-like screening model (COSMO). The experimental absorption spectra of pyridazine in aqueous solution were reproduced with good accuracy by theoretical treatment of an ensemble containing the explicit local solvation structures of pyridazine with relevant water molecules combined with the COSMO solvation model of water for long-range solvation.

Electrochemical Oxidation Enables Regioselective and Scalable α-C(sp3)-H Acyloxylation of Sulfides.

A highly selective, environmentally friendly, and scalable electrochemical protocol for the construction of α-acyloxy sulfides, through the synergistic effect of self-assembly-induced C(sp3)-H/O-H cross-coupling, is reported. It features exceptionally broad substrate scope, high regioselectivity, gram-scale synthesis, construction of complex molecules, and applicability to a variety of nucleophiles. Moreover, the soft X-ray absorption technique and a series of control experiments have been utilized to demonstrate the pivotal role of the self-assembly of the substrates, which indeed is responsible for the excellent compatibility and precise control of high regioselectivity in our electrochemical protocol.

Photoelectron based soft x-ray detector for removing high order x rays.

Soft x-ray absorption spectroscopy (XAS) in the low energy region below 200 eV is important to investigate chemical and biological phenomena under an atmospheric condition since it covers K-edges of Li and B and L-edges of Si, P, S, and Cl. Monochromatic soft x rays usually include not only first order x rays but also high order x rays due to the high order diffraction of a plane grating monochromator. It is difficult to measure XAS in the low energy region under an atmospheric helium condition since the transmitted soft x rays mostly consist of the high order x rays due to the low transmission of the first order x rays. In this study, we have developed a photoelectron based soft x-ray (PBSX) detector, where the Au 4f photoelectrons emitted by the first order x rays are separated from those by the high order x rays using a difference in kinetic energies of photoelectrons. By using the PBSX detector, we have successfully obtained Si L-edge XAS spectra of the SiC and polymer/SiC films that mainly include the first order x rays by removing the major contributions of the second order x rays at the C K-edge and the fifth order x rays at the O K-edge. In the future, several physical, chemical, and biological phenomena in solution will be investigated by XAS in the low energy region with the PBSX detector.

Quantum Materials Exploration by Sequential Screening Technique of Heteroatomicity.

Subnanoparticles (SNPs) exhibit unique properties and functions due to their extremely small particle sizes which extend into the quantum scale. Although the synthesis of SNPs requiring precise control of atomicity and composition has not been accomplished, we recently developed an atom-hybridization method (AHM) that realizes such atomic-level control using a macromolecular template. As a next step in the quest for innovative quantum materials, the practical creation of functional subnanomaterials will become a central subject. In this study, we established a new screening technique for functional SNPs by focusing on the simple indium-tin binary system with sequential compositions using the latest AHM. As a result, it was revealed that a thermodynamically unstable indium species was produced only at a certain composition leading to a durable luminescent function. Such a phenomenon in subnanosized substances will play an important role in the development of the as-yet-unknown field of quantum materials.

Microheterogeneity in Aqueous Acetonitrile Solution Probed by Soft X-ray Absorption Spectroscopy.

Chemical processes in solution are influenced by microheterogeneity (MH), where two liquids seem to be mixed in a macroscopic scale but are microscopically inhomogeneous. We have investigated one of the simplest MH systems, aqueous acetonitrile solution, using soft X-ray absorption spectroscopy (XAS). Molecular interactions of acetonitrile were revealed by C and N K-edge XAS at different concentrations, and those of solvent water were separately revealed by O K-edge XAS. The energy shift of the C≡N π* peak at the C K-edge shows three characteristic concentration regions and a phase-transition-like behavior between them. By comparing the energy shifts in XAS spectra with ab initio quantum chemical inner-shell calculations, we have determined local structures of acetonitrile-water mixtures in three concentration regions and found that the dipole interaction between acetonitrile and water is the key structure to emerge the MH state in the middle concentration region.

Soft X-ray absorption spectroscopy in the low-energy region explored using an argon gas window.

The soft X-ray region below 200 eV is important for investigating chemical and biological phenomena since it covers K-edges of Li and B and L-edges of Si, P, S and Cl. Helium gas is generally used as the soft X-ray transmission window for soft X-ray absorption spectroscopy (XAS) under atmospheric conditions. However, the helium gas window cannot be applied to XAS in the low-energy region since transmitted soft X-rays mostly consist of high-order X-rays due to the low transmission of first-order X-rays. In this study, the argon gas window is proposed as a new soft X-ray transmission window in the low-energy region. High-order X-rays are removed by the absorption of the Ar L-edge (240 eV), and first-order X-rays become the major contribution of transmitted soft X-rays in the low-energy region. Under atmospheric argon conditions, the double-excitation Rydberg series of helium gas (60 eV), Si L-edge XAS of an Si3N4 membrane (100 eV) and S L-edge XAS of dimethyl sulfoxide gas (170 eV) are successfully measured, indicating that the argon gas window is effective for soft X-ray transmission in the low-energy region from 60 eV to 240 eV.

Soft X-ray Absorption Spectroscopy of Liquids for Understanding Chemical Processes in Solution.

Soft X-ray absorption spectroscopy (XAS) involving excitation processes of a core electron to unoccupied states is an effective method to study local structures around excited C, N, and O atoms in liquid samples. Since soft X-rays are strongly absorbed by air and liquid itself, we have developed transmission-type liquid flow cells, where the absorbance of liquid samples can be easily reduced and optimized by controlling the liquid thickness. By using the transmission-mode XAS techniques, we have investigated local structures of several liquid samples such as concentration dependence of aqueous pyridine solutions and unexpected temperature-dependent structural changes in liquid benzene from the precise energy shift measurements in XAS spectra with the help of molecular dynamics simulation and inner-shell calculations. These XAS techniques are also applied to in situ/operando observation of chemical processes in solutions such as catalytic and electrochemical reactions.

Laminar flow in microfluidics investigated by spatially-resolved soft X-ray absorption and infrared spectroscopy.

The application of soft X-ray absorption spectroscopy (XAS) to liquid cells based on microfluidics for chemical state analysis of light elements is much more difficult than hard X-ray absorption since soft X-rays cannot deeply penetrate a microfluidic cell. In this study, we have newly developed a microfluidic cell for spatially resolved XAS, where a 100 nm thick Si3N4 membrane is used for the measurement window to transmit soft X-rays for keeping the microfluidic flow at a width and depth of 50 µm. The π* peak of pyridine near the N K-edge XAS shows characteristic energy shifts near the liquid-liquid interface in a laminar flow of pyridine and water. The distributions of the molar fractions of pyridine and water near the liquid-liquid interface have been determined from the energy shifts of the π* peak probed at different geometric positions, where pyridine is mixed in the water part of the laminar flow and vice versa. The spatial distribution of both species has also been studied by infrared microscopy, using the same microfluidic setup. The present work clearly shows that these spectroscopic techniques are easily applicable to chemical and biological reactions prepared by microfluidics.

Uncovering the Charge Transfer between Carbon Dots and Water by In Situ Soft X-ray Absorption Spectroscopy.

Carbon dots (CDs) exhibit outstanding physicochemical properties that render them excellent materials for various applications, often occurring in an aqueous environment, such as light harvesting and fluorescence bioimaging. Here we characterize the electronic structures of CDs and water molecules in aqueous dispersions using in situ X-ray absorption spectroscopy. Three types of CDs with different core structures (amorphous vs graphitic) and compositions (undoped vs nitrogen-doped) were investigated. Depending on the CD core structure, different ionic currents generated upon X-ray irradiation of the CD dispersions at the carbon K-edge were detected, which are interpreted in terms of different charge transfer to the surrounding solvent molecules. The hydrogen bonding networks of water molecules upon interaction with the different CDs were also probed at the oxygen K-edge. Both core graphitization and nitrogen doping were found to endow the CDs with enhanced electron transfer and hydrogen bonding capabilities with the surrounding water molecules.

Temperature-Dependent Structural Changes in Liquid Benzene.

Benzene is the simplest aromatic molecule with intermolecular π-π interactions. Because ordered liquids are key structures used to study chemical and biological phenomena in the liquid state, ordered structures of benzene confined in nanopores have been extensively studied, whereas those in the liquid state are still unknown. In this study, we address fundamental questions regarding whether ordered structures of benzene are formed in the liquid state by using carbon K-edge X-ray absorption spectroscopy (XAS) as a sensitive local probe. By comparing unexpected temperature behaviors of the π* peak in XAS spectra with model calculations, we have investigated temperature-dependent changes of ordered structures in liquid benzene caused by the increase in abundance of the parallel sandwich orientation relative to parallel displaced structures for the higher temperature. These results are confirmed by infrared spectroscopy with additional support of vibrational mode calculations.

Interaction between Water and Alkali Metal Ions and Its Temperature Dependence Revealed by Oxygen K-Edge X-ray Absorption Spectroscopy.

Interaction between water molecules and alkali metal ions in aqueous salt solutions has been studied by the oxygen K-edge soft X-ray absorption spectroscopy (XAS) in transmission mode. In the measurement of several alkali halide aqueous solutions with different alkali chlorides (Li, Na, and K) and different sodium halides (Cl, Br, and I), the pre-edge component arising from the hydration water molecules shows a blue shift in peak energy as strongly depending on cations but not on anions. In the temperature dependent measurement, the pre-edge component arising from water molecules beyond the first hydration shell shows the same behavior as that of pure liquid water. On the other hand, the pre-edge component arising from water molecules in the first hydration shell of Li+ ions is not evidently dependent on the temperature, indicating that the hydration water molecules are more strongly bound with Li+ ions than the other water molecules. These experimental results are supported by the results of radial distribution functions of the first hydration shell and their temperature dependence, evaluated by molecular dynamics simulations.

Impacts of Conformational Geometries in Fluorinated Alkanes.

Research of blood substitute formulations and their base materials is of high scientific interest. Especially fluorinated microemulsions based on perfluorocarbons, with their interesting chemical properties, offer opportunities for applications in biomedicine and physical chemistry. In this work, carbon K-edge absorption spectra of liquid perfluoroalkanes and their parent hydrocarbons are presented and compared. Based on soft X-ray absorption, a comprehensive picture of the electronic structure is provided with the aid of time dependent density functional theory. We have observed that conformational geometries mainly influence the chemical and electronic interactions in the presented liquid materials, leading to a direct association of conformational geometries to the dissolving capacity of the presented perfluorocarbons with other solvents like water and possibly gases like oxygen.