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1.
Mar Biotechnol (NY) ; 25(6): 1057-1075, 2023 Dec.
Article in English | MEDLINE | ID: mdl-37878212

ABSTRACT

Rohu, Labeo rohita, is one of the most important aquaculture species in the Indian subcontinent. Understanding the molecular-level physiological responses to thermal stress or climate change is essential. In the present work, transcriptome sequencing was carried out in the muscle tissue of the rohu in response to heat stress (35 °C) in comparison with the control (28 °C). A total of 125 Gb of sequence data was generated, and the raw-reads were filtered and trimmed, which resulted in 484 million quality reads. Reference-based assembly of reads was performed using L. rohita genome, and a total of 90.17% of reads were successfully mapped. A total of 37,462 contigs were assembled with an N50 value of 1854. The differential expression analysis revealed a total of 107 differentially expressed genes (DEGs) (15 up-, 37 down-, and 55 neutrally regulated) as compared to the control group (Log2FC > 2, P < 0.05). Gene enrichment analysis of DEGs indicates that transcripts were associated with molecular, biological, and cellular activities. The randomly selected differentially expressed transcripts were validated by RT-qPCR and found consistent expression patterns in line with the RNA-seq data. Several transcripts such as SERPINE1(HSP47), HSP70, HSP90alpha, Rano class II histocompatibility A beta, PGC-1 and ERR-induced regulator, proto-oncogene c-Fos, myozenin2, alpha-crystallin B chain-like protein, angiopoietin-like protein 8, and acetyl-CoA carboxylases have been identified in muscle tissue of rohu that are associated with stress/immunity. This study identified the key biomarker SERPINE1 (HSP47), which showed significant upregulation (~ 2- to threefold) in muscle tissue of rohu exposed to high temperature. This study can pave a path for the identification of stress-responsive biomarkers linked with thermal adaptations in the farmed carps.


Subject(s)
Carps , Cyprinidae , Animals , Transcriptome , Cyprinidae/genetics , RNA-Seq , Genes, Regulator
2.
Gene ; 864: 147294, 2023 May 15.
Article in English | MEDLINE | ID: mdl-36858189

ABSTRACT

Precise estimation of genome size (GS) is vital for various genomic studies, such as deciding genome sequencing depth, genome assembly, biodiversity documentation, evolution, genetic disorders studies, duplication events etc. Animal Genome Size Database provides GS of over 2050 fish species, which ranges from 0.35 pg in pufferfish (Tetraodon nigroviridis) to 132.83 pg in marbled lungfish (Protopterus aethiopicus). The GS of majority of the fishes inhabiting waters of Indian subcontinent are still missing. In present study, we estimated GS of 51 freshwater teleost (31 commercially important, 7 vulnerable and 13 ornamental species) that ranged from 0.58 pg in banded gourami (Trichogaster fasciata) to 1.92 pg in scribbled goby (Awaous grammepomus). Substantial variation in GS was observed within the same fish orders (0.64-1.45 pg in cypriniformes, 0.70-1.41 pg in siluriformes and 0.58-1.92 pg in perciformes). We examined the relationship between the GS, chromosome number and body length across all the fishes. Body length was found to be associated with GS, whereas no relationship was noticed between the GS and the chromosome number. The analysis using ancestral information revealed haploid chromosome number 25, 27 and 24 for the most recent common ancestor of cypriniformes, siluriformes and perciformes, respectively. The study led to generation of new records on GS of 43 fish species and revalidated records for 8 species. The finding is valuable resource for further research in the areas of fish genomics, molecular ecology and evolutionary conservation genetics.


Subject(s)
Catfishes , Cypriniformes , Perciformes , Animals , Genome Size , Evolution, Molecular , Fishes/genetics , Chromosomes/genetics , Genomics , Perciformes/genetics , Catfishes/genetics , Cypriniformes/genetics , Phylogeny
3.
Mucosal Immunol ; 16(3): 233-249, 2023 06.
Article in English | MEDLINE | ID: mdl-36868479

ABSTRACT

The loss of IL-10R function leads to severe early onset colitis and, in murine models, is associated with the accumulation of immature inflammatory colonic macrophages. We have shown that IL-10R-deficient colonic macrophages exhibit increased STAT1-dependent gene expression, suggesting that IL-10R-mediated inhibition of STAT1 signaling in newly recruited colonic macrophages might interfere with the development of an inflammatory phenotype. Indeed, STAT1-/- mice exhibit defects in colonic macrophage accumulation after Helicobacter hepaticus infection and IL-10R blockade, and this was phenocopied in mice lacking IFNγR, an inducer of STAT1 activation. Radiation chimeras demonstrated that reduced accumulation of STAT1-deficient macrophages was based on a cell-intrinsic defect. Unexpectedly, mixed radiation chimeras generated with both wild-type and IL-10R-deficient bone marrow indicated that rather than directly interfering with STAT1 function, IL-10R inhibits the generation of cell extrinsic signals that promote the accumulation of immature macrophages. These results define the essential mechanisms controlling the inflammatory macrophage accumulation in inflammatory bowel diseases.


Subject(s)
Colitis , Mice , Animals , Colitis/metabolism , Macrophages/metabolism , Receptors, Interleukin-10/genetics , Receptors, Interleukin-10/metabolism , Signal Transduction , Mice, Inbred C57BL , Mice, Knockout
4.
Biotechnol Genet Eng Rev ; 39(1): 118-142, 2023 Apr.
Article in English | MEDLINE | ID: mdl-35876332

ABSTRACT

Diabetic retinopathy is one of the withering disorders that has been making the lives of patients miserable. Arising as a result of chronic high blood sugar levels in diabetes patients, retinopathy has become a major reason causing permanent blindness, retinal detachment, vitreous humor, rage, or glaucoma among patients. Angiogenesis being the major culprit behind the development of this condition is the growth of new blood vessels from the earlier ones existing. The abnormal growth and poor development of blood vessels also lead to aggravation of the conditions, with vascular endothelial growth factor (VEGF) playing a major role in the process. Various anti-angiogenic therapies or anti-VEGF therapies are being explored for the treatment of this condition. 4 widely explored drugs being-Bevacizumab, pegaptanib sodium, ranibizumab, and aflibercept. The review article tries to summarize studies illustrating the efficacy of these drugs in the treatment of diabetic retinopathy along with some of the herbal therapeutic paradigms displaying anti-angiogenic action that is being used to treat this condition.


Subject(s)
Diabetes Mellitus , Diabetic Retinopathy , Humans , Diabetic Retinopathy/drug therapy , Angiogenesis Inhibitors/therapeutic use , Vascular Endothelial Growth Factor A/therapeutic use , Ranibizumab/therapeutic use , Drug Development , Recombinant Fusion Proteins/therapeutic use , Diabetes Mellitus/drug therapy
5.
Inorg Chem ; 61(46): 18524-18535, 2022 Nov 21.
Article in English | MEDLINE | ID: mdl-36342975

ABSTRACT

A family of five host-guest assemblies comprising different metal ions inside a cuboid 12-palladium-oxo cage, [MO8Pd12L8]n- (MPd12L8, M = ScIII, CoII, CuII, L = AsO43-; M = CdII, HgII, L = PhAsO32-), was synthesized and structurally characterized in the solid state by single-crystal X-ray diffraction (XRD), Fourier transform infrared spectroscopy (FT-IR), and thermogravimetric analysis, and their solution and gas-phase stability were validated by multinuclear NMR spectroscopy and electrospray-ionization mass spectrometry (ESI-MS). The polyoxopalladates (POPs) ScPd12As8, CoPd12As8, and CuPd12As8 represent the first three examples of the MPd12As8 archetype. The unique cubic ligand field of {MO8} allows for collecting the speciation profiles of the POPs in solution using 45Sc and 113Cd NMR techniques. Detailed magnetic and electron paramagnetic resonance (EPR) studies were performed on CuPd12As8. Catalytic studies on MPd12As8 (M = CuII and CoII) supported on SBA-15 unveiled a guest metal-dependent structure-function relationship, with CuPd12As8 being the more efficient precatalyst for the hydroconversion of o-xylene in a fixed-bed reactor.

6.
Sci Rep ; 12(1): 452, 2022 01 10.
Article in English | MEDLINE | ID: mdl-35013585

ABSTRACT

Macrophages are a heterogeneous population of mononuclear phagocytes abundantly distributed throughout the intestinal compartments that adapt to microenvironmental specific cues. In adult mice, the majority of intestinal macrophages exhibit a mature phenotype and are derived from blood monocytes. In the steady-state, replenishment of these cells is reduced in the absence of the chemokine receptor CCR2. Within the intestine of mice with colitis, there is a marked increase in the accumulation of immature macrophages that demonstrate an inflammatory phenotype. Here, we asked whether CCR2 is necessary for the development of colitis in mice lacking the receptor for IL10. We compared the development of intestinal inflammation in mice lacking IL10RA or both IL10RA and CCR2. The absence of CCR2 interfered with the accumulation of immature macrophages in IL10R-deficient mice, including a novel population of rounded submucosal Iba1+ cells, and reduced the severity of colitis in these mice. In contrast, the absence of CCR2 did not reduce the augmented inflammatory gene expression observed in mature intestinal macrophages isolated from mice lacking IL10RA. These data suggest that both newly recruited CCR2-dependent immature macrophages and CCR2-independent residual mature macrophages contribute to the development of intestinal inflammation observed in IL10R-deficient mice.


Subject(s)
Colitis/immunology , Interleukin-10 Receptor alpha Subunit/immunology , Intestines/immunology , Monocytes/immunology , Receptors, CCR2/immunology , Animals , Colitis/genetics , Female , Humans , Interleukin-10 Receptor alpha Subunit/genetics , Macrophages/immunology , Male , Mice , Mice, Knockout , Receptors, CCR2/genetics
7.
Microbiome ; 9(1): 215, 2021 11 03.
Article in English | MEDLINE | ID: mdl-34732258

ABSTRACT

BACKGROUND: The gut microbiome is altered in patients with inflammatory bowel disease, yet how these alterations contribute to intestinal inflammation is poorly understood. Murine models have demonstrated the importance of the microbiome in colitis since colitis fails to develop in many genetically susceptible animal models when re-derived into germ-free environments. We have previously shown that Wiskott-Aldrich syndrome protein (WASP)-deficient mice (Was-/-) develop spontaneous colitis, similar to human patients with loss-of-function mutations in WAS. Furthermore, we showed that the development of colitis in Was-/- mice is Helicobacter dependent. Here, we utilized a reductionist model coupled with multi-omics approaches to study the role of host-microbe interactions in intestinal inflammation. RESULTS: Was-/- mice colonized with both altered Schaedler flora (ASF) and Helicobacter developed colitis, while those colonized with either ASF or Helicobacter alone did not. In Was-/- mice, Helicobacter relative abundance was positively correlated with fecal lipocalin-2 (LCN2), a marker of intestinal inflammation. In contrast, WT mice colonized with ASF and Helicobacter were free of inflammation and strikingly, Helicobacter relative abundance was negatively correlated with LCN2. In Was-/- colons, bacteria breach the mucus layer, and the mucosal relative abundance of ASF457 Mucispirillum schaedleri was positively correlated with fecal LCN2. Meta-transcriptomic analyses revealed that ASF457 had higher expression of genes predicted to enhance fitness and immunogenicity in Was-/- compared to WT mice. In contrast, ASF519 Parabacteroides goldsteinii's relative abundance was negatively correlated with LCN2 in Was-/- mice, and transcriptional analyses showed lower expression of genes predicted to facilitate stress adaptation by ASF519 in Was-/-compared to WT mice. CONCLUSIONS: These studies indicate that the effect of a microbe on the immune system can be context dependent, with the same bacteria eliciting a tolerogenic response under homeostatic conditions but promoting inflammation in immune-dysregulated hosts. Furthermore, in inflamed environments, some bacteria up-regulate genes that enhance their fitness and immunogenicity, while other bacteria are less able to adapt and decrease in abundance. These findings highlight the importance of studying host-microbe interactions in different contexts and considering how the transcriptional profile and fitness of bacteria may change in different hosts when developing microbiota-based therapeutics. Video abstract.


Subject(s)
Colitis , Helicobacter , Animals , Colitis/microbiology , Disease Models, Animal , Helicobacter/genetics , Host Microbial Interactions , Humans , Inflammation , Mice
8.
Inorg Chem ; 60(11): 8267-8275, 2021 Jun 07.
Article in English | MEDLINE | ID: mdl-34041905

ABSTRACT

Six arsenic(III)-capped 12-tungsto-2-arsenates(III) of the type [M2(AsIIIW6O25)2(AsIIIOH)x]n- (M = CrIII, 1; FeIII, 2; ScIII, 3; InIII, 4; TiIV, 5; MnII, 6) have been synthesized in aqueous medium by direct reaction of the elements using a one-pot strategy and structurally characterized by FT-IR spectroscopy, single-crystal XRD, and elemental analysis. Polyanions 1-6 are comprised of two octahedrally coordinated guest metal ions M sandwiched between two {AsW6} units, resulting in a structure with C2h point-group symmetry. Polyanions 1-5 contain tri- and tetravalent metal ion guests M (M = CrIII, FeIII, ScIII, InIII, and TiIV, respectively), and they have one {AsIIIOH} group grafted on each {AsW6} unit, whereas the divalent MnII-containing derivative 6 has two such {AsIIIOH} groups grafted on each {AsW6} unit. Magnetic studies on polyanions 3-5 over the temperature range 1.8-295 K and magnetic fields of 0-7 T confirmed that they are diamagnetic. On the other hand, polyanions 1, 2, and 6 are strongly magnetic and follow the Curie-Weiss law above 30 K. The susceptibility plots of 1 and 6 exhibit broad peaks suggesting short-range antiferromagnetic ordering, while the very weak antiferromagnetic ordering of 2 is overshadowed by traces of a paramagnetic impurity. The magnetization data of 1, 2, and 6 at 1.8 K over 0-7 T were analyzed by using the Heisenberg exchange procedure. Small (negative) values of the obtained J values help in understanding the absence of long-range antiferromagnetic ordering.

9.
Dalton Trans ; 50(11): 3923-3930, 2021 Mar 21.
Article in English | MEDLINE | ID: mdl-33635298

ABSTRACT

Interaction of the trilacunary 9-tungstosilicate [A-α-SiW9O34]10- with cobalt(ii), nickel(ii) and zinc(ii) ions in pH 9 aqueous medium at room temperature led to the formation of the respective M4-containing heteropolytungstates [M4(OH)3(H2O)2(α-SiW10O36.5)2]13- (M = Co2+ (1), Ni2+ (2), and Zn2+ (3)). Polyanions 1-3 were characterized in the solid state by single-crystal XRD, FT-IR spectroscopy, and thermogravimetric and elemental analyses. Electrochemical studies showed that the Co2+ ions in 1 can be oxidized to Co3+ and the CVs of the WVI centers of the polyanions feature well-defined and chemically reversible reduction waves. Magnetic measurements on 1 and 2 showed paramagnetism with complex ferromagnetic and antiferromagnetic interactions. A model was presented for extracting the exchange constants for the magnetic exchange interaction.

10.
Pediatr Res ; 90(5): 1023-1030, 2021 11.
Article in English | MEDLINE | ID: mdl-33504970

ABSTRACT

BACKGROUND: In infants admitted to an ICU with respiratory failure, there is an association between the ratio of CD8+ to CD4+ T cells within the upper respiratory tract and disease severity. Whether this ratio is associated with respiratory disease severity within children presenting to a pediatric emergency department is not known. METHODS: We studied a convenience sample of 63 children presenting to a pediatric emergency department with respiratory symptoms. T cell subsets in the nasal mucosa were analyzed by flow cytometry. We compared CD4+ and CD8+ T cells subsets in these samples and analyzed the proportion of these subsets that expressed markers associated with tissue residency. RESULTS: We were able to identify major subsets of CD8 and CD4 T cells within the nasal mucosa using flocked swabs. We found no difference in the ratio CD8+ to CD4+ T cells in children with upper or lower respiratory illness. A positive association between tissue-resident memory T cell frequency and patient age was identified. CONCLUSIONS: In our patient populations, the CD8+:CD4+ ratio was not associated with disease severity. The majority of T cells collected on nasal swabs are antigen experienced, and there is an association between the frequency of tissue-resident T cells and age. IMPACT: Immune cell populations from the nasal mucosa can be captured using flocked nasal swabs and analyzed by flow cytometry. Nasal CD8+:CD4+ ratio does not predict respiratory illness severity in children presenting to the emergency department. The frequency of CD8+ and CD4+ resident memory T cells within the nasal mucosa increases with age.


Subject(s)
CD4-Positive T-Lymphocytes/immunology , CD8-Positive T-Lymphocytes/immunology , Nasal Mucosa/immunology , Respiratory Tract Diseases/immunology , T-Lymphocyte Subsets , Adolescent , Child , Child, Preschool , Cross-Sectional Studies , Female , Humans , Infant , Male
11.
DNA Res ; 28(1)2021 Jan 19.
Article in English | MEDLINE | ID: mdl-33416875

ABSTRACT

The walking catfish Clarias magur (Hamilton, 1822) (magur) is an important catfish species inhabiting the Indian subcontinent. It is considered as a highly nutritious food fish and has the capability to walk to some distance, and survive a considerable period without water. Assembly, scaffolding and several rounds of iterations resulted in 3,484 scaffolds covering ∼94% of estimated genome with 9.88 Mb largest scaffold, and N50 1.31 Mb. The genome possessed 23,748 predicted protein encoding genes with annotation of 19,279 orthologous genes. A total of 166 orthologous groups represented by 222 genes were found to be unique for this species. The Computational Analysis of gene Family Evolution (CAFE) analysis revealed expansion of 207 gene families and 100 gene families have rapidly evolved. Genes specific to important environmental and terrestrial adaptation, viz. urea cycle, vision, locomotion, olfactory and vomeronasal receptors, immune system, anti-microbial properties, mucus, thermoregulation, osmoregulation, air-breathing, detoxification, etc. were identified and critically analysed. The analysis clearly indicated that C. magur genome possessed several unique and duplicate genes similar to that of terrestrial or amphibians' counterparts in comparison to other teleostean species. The genome information will be useful in conservation genetics, not only for this species but will also be very helpful in such studies in other catfishes.


Subject(s)
Catfishes/genetics , Catfishes/physiology , Fish Proteins/genetics , Genome , Animals , Evolution, Molecular , Genomics , High-Throughput Nucleotide Sequencing , Male , Phylogeny , Whole Genome Sequencing
12.
Inorg Chem ; 59(18): 13034-13041, 2020 Sep 21.
Article in English | MEDLINE | ID: mdl-32822165

ABSTRACT

Reaction of the mixed-valent Mn12-acetato complex [MnIII8MnIV4O12(CH3COO)16(H2O)4] with the trilacunary Wells-Dawson-type heteropolytungstate [P2W15O56]12- in acidic acetate solution (pH 1.1) resulted in the tetra-MnIII-containing polyanion [MnIII4(H2O)2(P2W15O56)2]12- (1). Single-crystal XRD on Na12[MnIII4(H2O)2(P2W15O56)2]·84H2O (1a) revealed that four MnIII ions form a rhombic Mn4O16 core encapsulated by two [P2W15O56]12- units. X-ray photoelectron spectroscopy (XPS) data confirm the +3 oxidation state of the four manganese ions in 1. Magnetic measurements from 1.8-300 K in a 100 Oe magnetic field allowed for the extraction of full fitting parameters from the susceptibility data for 1. The negative Ja value (Ja = -2.16 ± 0.08 K, Jb = 3.24 ± 1.73 K, g = 2.35 ± 0.040, and ρ = 0.34 ± 0.03) suggests a dominant antiferromagnetic spin exchange interaction between the four MnIII ions, with the positive Jb being an accompanying result of Ja. Electrochemical studies revealed a reversible MnIV/MnIII redox couple in 1 at the +0.80 to +1.1 V potential region with E1/2 = +0.907 V.

13.
Chemistry ; 26(68): 15821-15824, 2020 Dec 04.
Article in English | MEDLINE | ID: mdl-32744748

ABSTRACT

The 48-FeIII -containing 96-tungsto-16-phosphate, [FeIII 48 (OH)76 (H2 O)16 (HP2 W12 O48 )8 ]36- (Fe48 ), has been synthesized and structurally characterized. This polyanion comprises eight equivalent {FeIII 6 P2 W12 } units that are linked in an end-on fashion forming a macrocyclic assembly that contains more iron centers than any other polyoxometalate (POM) known to date. The novel Fe48 was synthesized by a simple one-pot reaction of an {Fe22 } coordination complex with the hexalacunary {P2 W12 } POM precursor in water. The title polyanion was characterized by single-crystal XRD, FTIR, TGA, magnetic and electrochemical studies.

14.
Inorg Chem ; 59(14): 10083-10090, 2020 Jul 20.
Article in English | MEDLINE | ID: mdl-32635719

ABSTRACT

We combined Raman scattering and magnetic susceptibility to explore the properties of [(CH3)2NH2]Mn(HCOO)3 under compression. Analysis of the formate bending mode reveals a broad two-phase region surrounding the 4.2 GPa critical pressure that becomes increasingly sluggish below the order-disorder transition due to the extensive hydrogen-bonding network. Although the paraelectric and ferroelectric phases have different space groups at ambient-pressure conditions, they both drive toward P1 symmetry under compression. This is a direct consequence of how the order-disorder transition changes under pressure. We bring these findings together with prior magnetization work to create a pressure-temperature-magnetic field phase diagram, unveiling entanglement, competition, and a progression of symmetry-breaking effects that underlie functionality in this molecule-based multiferroic. That the high-pressure P1 phase is a subgroup of the ferroelectric Cc suggests the possibility of enhanced electric polarization as well as opportunity for strain control.

16.
Fish Physiol Biochem ; 46(4): 1337-1347, 2020 Aug.
Article in English | MEDLINE | ID: mdl-32232614

ABSTRACT

Danio rerio, zebrafish, has been widely used as a non-mammalian vertebrate model organism in various studies. The present research describes to develop and characterize a new cell line from a wild strain Indian zebrafish native to Brahmaputra River, Assam, India. The new cell line designated as DRCF was developed from the caudal fin of D. rerio. The cell line was successfully subcultured up to 31 passages. Growth studies revealed that cell growth of DRCF was optimal at 28 °C in L-15 medium supplemented with 20% FBS. Molecular characterization of the DRCF cell line using mitochondrial genes namely cytochrome oxidase subunit I gene (COI) and 16S rRNA authenticated the true origin of the cell line. The chromosome analysis of the DRCF cell line expressed its 50 diploid chromosome number of D. rerio. The immunocytochemical characterization of the cell line exhibited its fibroblastic morphology. The expression of the green fluorescent protein (GFP) following transfection revealed the suitability of the cell line for transfection studies.


Subject(s)
Animal Fins/cytology , Zebrafish/anatomy & histology , Animals , Cell Line , Cell Proliferation , Chromosomes , Electron Transport Complex IV/genetics , Genes, Mitochondrial , Immunohistochemistry , India , Microscopy, Phase-Contrast , Polymerase Chain Reaction , RNA, Ribosomal, 16S/genetics , Rivers , Seasons , Stem Cells/cytology , Transfection , Zebrafish/genetics
17.
Mucosal Immunol ; 13(1): 172-182, 2020 01.
Article in English | MEDLINE | ID: mdl-31659300

ABSTRACT

The generation of tissue-resident memory T cells (TRM) is an essential aspect of immunity at mucosal surfaces, and it has been suggested that preferential generation of TRM is one of the principal advantages of mucosally administered vaccines. We have previously shown that antigen-specific, IL-17-producing CD4+ T cells can provide capsular antibody-independent protection against nasal carriage of Streptococcus pneumoniae; but whether pneumococcus-responsive TRM are localized within the nasal mucosa and are sufficient for protection from carriage has not been determined. Here, we show that intranasal administration of live or killed pneumococci to mice generates pneumococcus-responsive IL-17A-producing CD4+ mucosal TRM. Furthermore, we show that these cells are sufficient to mediate long-lived, neutrophil-dependent protection against subsequent pneumococcal nasal challenge. Unexpectedly, and in contrast with the prevailing paradigm, we found that parenteral administration of killed pneumococci also generates protective IL-17A+CD4+ TRM in the nasal mucosa. These results demonstrate a critical and sufficient role of TRM in prevention of pneumococcal colonization, and further that these cells can be generated by parenteral immunization. Our findings therefore have important implications regarding the generation of immune protection at mucosal surfaces by vaccination.


Subject(s)
CD4-Positive T-Lymphocytes/immunology , Nose/immunology , Pneumococcal Infections/immunology , Streptococcal Vaccines/immunology , Streptococcus pneumoniae/physiology , Animals , Cells, Cultured , Disease Resistance , Humans , Immunologic Memory , Interleukin-17/metabolism , Lymphocyte Activation , Mice , Mice, Inbred C57BL , Vaccination
18.
Inorg Chem ; 58(22): 14939-14980, 2019 Nov 18.
Article in English | MEDLINE | ID: mdl-31668070

ABSTRACT

Nanostructured materials are essential building blocks for the fabrication of new devices for energy harvesting/storage, sensing, catalysis, magnetic, and optoelectronic applications. However, because of the increase of technological needs, it is essential to identify new functional materials and improve the properties of existing ones. The objective of this Viewpoint is to examine the state of the art of atomic-scale simulative and experimental protocols aimed to the design of novel functional nanostructured materials, and to present new perspectives in the relative fields. This is the result of the debates of Symposium I "Atomic-scale design protocols towards energy, electronic, catalysis, and sensing applications", which took place within the 2018 European Materials Research Society fall meeting.

19.
J Am Chem Soc ; 141(41): 16279-16287, 2019 Oct 16.
Article in English | MEDLINE | ID: mdl-31550144

ABSTRACT

A proton-transfer reaction between squaric acid (H2sq) and 2,3-dimethylpyrazine (2,3-Me2pyz) results in crystallization of a new organic antiferroelectric (AFE), (2,3-Me2pyzH+)(Hsq-)·H2O (1), which possesses a layered structure. The structure of each layer can be described as partitioned into strips lined with methyl groups of the Me2pyzH+ cations and strips featuring extensive hydrogen bonding between the Hsq- anions and water molecules. Variable-temperature dielectric measurements and crystal structures determined through a combination of single-crystal X-ray and neutron diffraction reveal an AFE ordering at 104 K. The phase transition is driven by ordering of protons within the hydrogen-bonded strips. Considering the extent of proton transfer, the paraelectric (PE) state can be formulated as (2,3-Me2pyzH+)2(Hsq23-)(H5O2+), whereas the AFE phase can be described as (2,3-Me2pyzH+)(Hsq-)(H2O). The structural transition caused by the localization of protons results in the change in color from yellow in the PE state to colorless in the AFE state. The occurrence and mechanism of the AFE phase transition have been also confirmed by heat capacity measurements and variable-temperature infrared and Raman spectroscopy. This work demonstrates a potentially promising approach to the design of new electrically ordered materials by engineering molecule-based crystal structures in which hydrogen-bonding interactions are intentionally partitioned into quasi-one-dimensional regions.

20.
Chemosphere ; 211: 316-323, 2018 Nov.
Article in English | MEDLINE | ID: mdl-30077112

ABSTRACT

The present study explored the induced genotoxicity (DNA damage) due to organophosphate pesticide profenofos (PFF) after in vivo exposure in freshwater fish Channa punctatus by the use of Comet assay and Random amplified polymorphic DNA (RAPD). The fish specimens were exposed to sub-lethal concentration of 1.16 ppb (50% of LC50) in a semi-static system and the DNA damage was assessed in exposed and control fish. The DNA damage was measured in erythrocytes as the percentage of DNA damage in Comet tails and RAPD technique using oligonucleotide primers of fish specimens exposed to the sublethal concentrations of PFF. The most informative primers in terms of variation in RAPD profile were found to be OPA-01, OPA-03, OPB-02, OPB-01 and OPA-13. Appearance/disappearance of bands and increase/decrease in the band intensity were evident in the RAPD profile of fish specimens exposed to PFF as compared to the control. Findings from the present study suggest that the potential impacts of assessment of the genotoxic impact of pesticide on fish.


Subject(s)
Comet Assay/methods , DNA Damage/drug effects , DNA/analysis , Fishes/genetics , Insecticides/toxicity , Organothiophosphates/toxicity , Random Amplified Polymorphic DNA Technique/methods , Animals , Fishes/growth & development , Fresh Water
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