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1.
Angew Chem Int Ed Engl ; 63(30): e202405412, 2024 Jul 22.
Article in English | MEDLINE | ID: mdl-38714489

ABSTRACT

Polycyclic π-conjugated compounds that contain tricoordinate boron atoms at their periphery represent an attractive class of materials with electron-accepting character. Their molecular design generally requires the introduction of a bulky aryl group onto the boron atom, where it provides predominantly kinetic stabilization. The addition of extra functionality to the aryl group on the boron atom can be expected to further expand the potential utility of this class of materials. Herein, we report the synthesis of a series of boracyclic π-conjugated molecules with firm ortho B⋅⋅⋅N nonbonding interactions by introducing N-containing electron-donors at the ortho-positions of the aryl group on the boron atom. X-ray crystallographic analysis revealed that the combination of a planar boracyclic π-skeleton with only sp2 carbons and a strong electron-donating phenothiazine moiety results in a particularly short B⋅⋅⋅N distance. Theoretical study provided insights into the inherent nature of the B⋅⋅⋅N interaction. Owing to their donor-acceptor (D-A) structures, these molecules exhibit substantially red-shifted fluorescence in solution, albeit that the fluorescence quantum yields (ΦF) are low. In contrast, when incorporated into films, these compounds exhibit thermally activated delayed fluorescence (TADF) with improved ΦF values. Organic light-emitting diodes (OLEDs) fabricated using the ortho-donor-substituted derivatives exhibit orange-red electroluminescence.

2.
Angew Chem Int Ed Engl ; 63(22): e202403829, 2024 May 27.
Article in English | MEDLINE | ID: mdl-38556467

ABSTRACT

Embedding two boron atoms into a polycyclic aromatic hydrocarbon (PAH) leads to the formation of a neutral analogue that is isoelectronic to the corresponding dicationic PAH skeleton, which can significantly alter its electronic structure. Based on this concept, we explore herein the identification of near-infrared (NIR)-emissive PAHs with the aid of an in silico screening method. Using perylene as the PAH scaffold, we embedded two boron atoms and fused two thiophene rings to it. Based on this design concept, all possible structures (ca. 2500 entities) were generated using a comprehensive structure generator. Time-dependent DFT calculations were conducted on all these structures, and promising candidates were extracted based on the vertical excitation energy, transition dipole moment, and atomization energy per bond. One of the extracted dithieno-diboraperylene candidates was synthesized and indeed exhibited emission at 724 nm with a quantum yield of 0.40 in toluene, demonstrating the validity of this screening method. This modification was further applied to other PAHs, and a series of thienobora-modified PAHs was synthesized.

3.
Front Psychol ; 14: 1153871, 2023.
Article in English | MEDLINE | ID: mdl-37538996

ABSTRACT

Surface linear (left-to-right) arrangements of human languages are actually an amalgam of the core language system and systems that are not inherently related to language. It has been widely recognized that an unbounded array of hierarchically structured linguistic expressions is generated by the simplest combinatorial operation "Merge," and the notion of Merge-generability has been proposed as a key feature that characterizes structural dependencies among linguistic elements. Here we tested Merge-generable dependencies by using a Subject-Predicate matching task, which required both linguistic capacity and short-term memory. We used three types of dependency: Nesting, Crossing, and Grouping as the control. The Nesting dependency is totally Merge-generable, while the Crossing dependency requires some additional processes for memory-based ordering. In order to identify the regions employed for these two dependencies, we directly compared cortical responses to the sentence stimuli (with noun phrases and an adverb as the first half of stimuli, and with verbs as the latter) using functional magnetic resonance imaging (fMRI), and the following results were obtained. First, for the Nesting - Crossing contrast, significant activations were observed in the bilateral lateral premotor cortices (LPMCs) and inferior frontal gyri, left middle temporal gyrus, and bilateral angular/supramarginal gyri, indicating engagement of the syntax-related networks. In contrast, the Crossing - Nesting contrast showed focal activations in the left fusiform gyrus, lingual gyrus, and middle occipital gyrus (L. FG/LG/MOG). Secondly, for the first half of the Nesting stimuli, signal changes in the bilateral LPMCs were well fitted with the estimates of computational costs to search the workspace and to select items (Σ operations). Moreover, for the latter half of the Crossing stimuli, the signal changes in the L. FG/LG/MOG were differentially fitted with the estimates of loads related to the ordering of elements/words (numbers of Ordering). Thirdly, these fitting models were by far more likely than the exchanged estimates between bilateral LPMCs and L. FG/LG/MOG, confirming a double dissociation for primary processes with Σ and Ordering. In conclusion, these results indicate that separate cortical networks are differentially employed, and their careful elucidation will provide further insights and challenges.

4.
BMC Bioinformatics ; 23(1): 371, 2022 Sep 12.
Article in English | MEDLINE | ID: mdl-36096737

ABSTRACT

BACKGROUND: Epigenetic modifications established in mammalian gametes are largely reprogrammed during early development, however, are partly inherited by the embryo to support its development. In this study, we examine CpG island (CGI) sequences to predict whether a mouse blastocyst CGI inherits oocyte-derived DNA methylation from the maternal genome. Recurrent neural networks (RNNs), including that based on gated recurrent units (GRUs), have recently been employed for variable-length inputs in classification and regression analyses. One advantage of this strategy is the ability of RNNs to automatically learn latent features embedded in inputs by learning their model parameters. However, the available CGI dataset applied for the prediction of oocyte-derived DNA methylation inheritance are not large enough to train the neural networks. RESULTS: We propose a GRU-based model called CMIC (CGI Methylation Inheritance Classifier) to augment CGI sequence by converting it into variable-length k-mers, where the length k is randomly selected from the range [Formula: see text] to [Formula: see text], N times, which were then used as neural network input. N was set to 1000 in the default setting. In addition, we proposed a new embedding vector generator for k-mers called splitDNA2vec. The randomness of this procedure was higher than the previous work, dna2vec. CONCLUSIONS: We found that CMIC can predict the inheritance of oocyte-derived DNA methylation at CGIs in the maternal genome of blastocysts with a high F-measure (0.93). We also show that the F-measure can be improved by increasing the parameter N, that is, the number of sequences of variable-length k-mers derived from a single CGI sequence. This implies the effectiveness of augmenting input data by converting a DNA sequence to N sequences of variable-length k-mers. This approach can be applied to different DNA sequence classification and regression analyses, particularly those involving a small amount of data.


Subject(s)
DNA Methylation , Databases, Genetic , Animals , Carbazoles , CpG Islands , Inheritance Patterns , Mammals/genetics , Mice
5.
Chem Sci ; 13(5): 1484-1491, 2022 Feb 02.
Article in English | MEDLINE | ID: mdl-35222933

ABSTRACT

Planarized triarylboranes are attracting increasing attention not only as models of boron-doped graphenes, but also as promising materials for organic optoelectronics. In particular, polycyclic aromatic hydrocarbon (PAH) skeletons with embedded boron atom(s) in the inner positions are of importance in light of their high chemical stability and π-stacking ability derived from their planar geometries. Herein, we disclose a robust synthesis of such fully fused boron-doped PAHs and their self-assembly behavior in aqueous media to explore their potential utility in biological applications. The synthesis using in situ-generated planar diarylboranes as a key precursor afforded a series of fully fused boron-doped PAHs, even including an amphiphilic derivative with hydrophilic side chains. These compounds exhibited red emission in solution, and slight structural modification resulted in increased fluorescence brightness. While these compounds showed relatively low Lewis acidity compared to their partially ring-fused counterparts, their Lewis acidities were slightly increased in polar solvents compared to those in nonpolar solvents. In addition, their B-N Lewis acid-base adducts, even those with a strong, charge-neutral Lewis base such as N,N-dimethylaminopyridine (DMAP), exhibited photo-dissociation behavior in the excited state. The amphiphilic derivative showed significant spectral changes with increased water content in DMSO/H2O mixed media and formed sheet-like aggregates. The disassembly and assembly processes of the aggregates were externally controlled by the addition of DMAP and an acid, accompanied by a change in the fluorescence intensity.

6.
J Am Chem Soc ; 143(26): 9944-9951, 2021 Jul 07.
Article in English | MEDLINE | ID: mdl-34109785

ABSTRACT

Heteroatom doping is a powerful strategy to alter the electronic structure of polycyclic aromatic hydrocarbons (PAHs). Especially boron doping endows PAH scaffolds with electron-accepting character and Lewis acidic centers. Herein, we report that embedding a five-membered borole ring into a polycyclic skeleton imparts the π-system with antiaromatic character and thereby induces unique properties and behavior. A series of borole-embedded π-conjugated compounds were synthesized from teraryl precursors via a borylation/intramolecular electrophilic C-H borylation sequence. The obtained compounds exhibit planar structures with distorted geometries around the boron center and form columnar slipped face-to-face π-stacked structures. Among these compounds, a pyrene-fused derivative shows an intense emission with a high quantum yield in solution. This compound also exhibits high Lewis acidity, which reflects the antiaromatic character and strained structure of the borole substructure. This compound forms a Lewis acid-base adduct even with weakly Lewis basic phosphorus-containing polycyclic π-systems. Analyzing the crystal structure of the thus-obtained adduct revealed a complex between the boron- and phosphorus-embedded π-systems with a direct B-P dative bond. This complex undergoes photodissociation in the excited state and exhibits an emission exclusively from the base-free borole-embedded π-system.

7.
Front Psychol ; 10: 2673, 2019.
Article in English | MEDLINE | ID: mdl-31849777

ABSTRACT

Ever since the inception of generative linguistics, various dependency patterns have been widely discussed in the literature, particularly as they pertain to the hierarchy based on "weak generation" - the so-called Chomsky Hierarchy. However, humans can make any possible dependency patterns by using artificial means on a sequence of symbols (e.g., computer programing). The differences between sentences in human language and general symbol sequences have been routinely observed, but the question as to why such differences exist has barely been raised. Here, we address this problem and propose a theoretical explanation in terms of a new concept of "Merge-generability," that is, whether the structural basis for a given dependency is provided by the fundamental operation Merge. In our functional magnetic resonance imaging (fMRI) study, we tested the judgments of noun phrase (NP)-predicate (Pred) pairings in sentences of Japanese, an SOV language that allows natural, unbounded nesting configurations. We further introduced two pseudo-adverbs, which artificially force dependencies that do not conform to structures generated by Merge, i.e., non-Merge-generable; these adverbs enable us to manipulate Merge-generability (Natural or Artificial). By employing this novel paradigm, we obtained the following results. Firstly, the behavioral data clearly showed that an NP-Pred matching task became more demanding under the Artificial conditions than under the Natural conditions, reflecting cognitive loads that could be covaried with the increased number of words. Secondly, localized activation in the left frontal cortex, as well as in the left middle temporal gyrus and angular gyrus, was observed for the [Natural - Artificial] contrast, indicating specialization of these left regions in syntactic processing. Any activation due to task difficulty was completely excluded from activations in these regions, because the Natural conditions were always easier than the Artificial ones. And finally, the [Artificial - Natural] contrast resulted in the dorsal portion of the left frontal cortex, together with wide-spread regions required for general cognitive demands. These results indicate that Merge-generable sentences are processed in these specific regions in contrast to non-Merge-generable sentences, demonstrating that Merge is indeed a fundamental operation, which comes into play especially under the Natural conditions.

8.
Chem Commun (Camb) ; 55(99): 14950-14953, 2019 Dec 25.
Article in English | MEDLINE | ID: mdl-31774077

ABSTRACT

The hydrophobicity and CH/π-interaction-driven self-assembly of an amphiphile that contains a biphenylanthracene group furnishes two-dimensional aggregates in dilute aqueous solution. A windmill-shaped molecular packing structure that arises from multiple intermolecular CH/π interactions of the aromatic hydrocarbons is the key motif for the self-assembly into micrometer-scale nanosheets.

9.
Mol Pain ; 122016.
Article in English | MEDLINE | ID: mdl-27909152

ABSTRACT

BACKGROUND: Exercise alleviates pain and it is a central component of treatment strategy for chronic pain in clinical setting. However, little is known about mechanism of this exercise-induced hypoalgesia. The mesolimbic dopaminergic network plays a role in positive emotions to rewards including motivation and pleasure. Pain negatively modulates these emotions, but appropriate exercise is considered to activate the dopaminergic network. We investigated possible involvement of this network as a mechanism of exercise-induced hypoalgesia. METHODS: In the present study, we developed a protocol of treadmill exercise, which was able to recover pain threshold under partial sciatic nerve ligation in mice, and investigated involvement of the dopaminergic reward network in exercise-induced hypoalgesia. To temporally suppress a neural activation during exercise, a genetically modified inhibitory G-protein-coupled receptor, hM4Di, was specifically expressed on dopaminergic pathway from the ventral tegmental area to the nucleus accumbens. RESULTS: The chemogenetic-specific neural suppression by Gi-DREADD system dramatically offset the effect of exercise-induced hypoalgesia in transgenic mice with hM4Di expressed on the ventral tegmental area dopamine neurons. Additionally, anti-exercise-induced hypoalgesia effect was significantly observed under the suppression of neurons projecting out of the ventral tegmental area to the nucleus accumbens as well. CONCLUSION: Our findings suggest that the dopaminergic pathway from the ventral tegmental area to the nucleus accumbens is involved in the anti-nociception under low-intensity exercise under a neuropathic pain-like state.


Subject(s)
Dopamine/metabolism , Exercise Therapy/methods , Neuralgia/pathology , Neuralgia/rehabilitation , Nucleus Accumbens/metabolism , Ventral Tegmental Area/physiopathology , Animals , Clozapine/analogs & derivatives , Clozapine/pharmacology , Disease Models, Animal , Dopamine Plasma Membrane Transport Proteins/genetics , Dopamine Plasma Membrane Transport Proteins/metabolism , Exercise Test , Hyperalgesia/etiology , Hyperalgesia/rehabilitation , Mice , Mice, Inbred C57BL , Mice, Transgenic , Nucleus Accumbens/drug effects , Pain Measurement , Pain Threshold/physiology , Phosphopyruvate Hydratase/genetics , Phosphopyruvate Hydratase/metabolism , Receptors, G-Protein-Coupled/metabolism , Serotonin Antagonists/pharmacology , Tyrosine 3-Monooxygenase/genetics , Tyrosine 3-Monooxygenase/metabolism
10.
Environ Sci ; 14(1): 35-9, 2007.
Article in English | MEDLINE | ID: mdl-17450119

ABSTRACT

Intestinal cells are the first line of defense against toxic substances that may enter the body orally. Some of these substances may emanate from wastewater treatment plants and thus may eventually enter the food chain. In this study, human intestinal Caco-2 cells were incubated with biologically treated activated sludge and lipopolysaccharide (LPS) to determine changes in protein expression and cell monolayer integrity. Caco-2 cells incubated for 3 h with 24-h-aerated activated sludge or 220 microg/ml LPS showed enhanced expression of the heat shock protein 90b (Hsp90b). The results further show that 220 microg/ml LPS is sufficient to irreversibly disrupt tight-junction permeability in 30 min. The Hsp90b expression by the Caco-2 cells incubated with biologically treated activated sludge may be a cellular protective mechanism against LPS-induced stress.


Subject(s)
HSP90 Heat-Shock Proteins/metabolism , Intestines/drug effects , Lipopolysaccharides/pharmacology , Sewage , Caco-2 Cells , Electrophoresis, Gel, Two-Dimensional , Humans , Intestinal Mucosa/metabolism , Proteomics , Spectrometry, Mass, Matrix-Assisted Laser Desorption-Ionization
11.
Water Res ; 39(19): 4693-704, 2005 Nov.
Article in English | MEDLINE | ID: mdl-16257033

ABSTRACT

We conducted a comparison of the characteristics of dissolved organic matter (DOM) taken from the bio-toilet and other sources. A characterisation of DOM was carried out to assess the stability of the compost generated during the thermophilic and aerobic biodegradation of faeces. In addition, levels of soluble microbial products generated in the bio-toilet composting reactor were compared with those taken from other sources. The results showed that (i) the main component of DOM from the bio-toilet are solutes with molecular weight (MW)>30,000 Da (40%), whereas micromolecules (MW< 1000 Da) constituted more than 60% of the DOM from other solid samples, while liquid samples reached even more than 90%; (ii) the DOM stabilisation level in the composting reactor of the bio-toilet system was greater than that shown by DOM from other sources; (iii) stabilisation of DOM in the bio-toilet system was characterised by an increasing amount of macromolecules (MW>30,000 Da) after a decreasing trend was observed in the early stages of the biodegradation process; and (iv) net production of lipopolysaccharide (LPS) in wastewater treatment plants is greater than in the bio-toilet.


Subject(s)
Bacteria, Aerobic/metabolism , Conservation of Natural Resources , Feces/microbiology , Organic Chemicals/metabolism , Refuse Disposal/methods , Biodegradation, Environmental , Molecular Weight , Time Factors
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