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1.
Plants (Basel) ; 12(5)2023 Feb 22.
Article in English | MEDLINE | ID: mdl-36903864

ABSTRACT

Orchard cultural practices, i.e., irrigation, fertilizer, and fruit thinning, are crucially encompassed to enhance fruit yield and quality. Appropriate irrigation and fertilizer inputs improve plant growth and fruit quality, but their overuse leads to the degradation of the ecosystem and water quality, and other biological concerns. Potassium fertilizer improves fruit sugar and flavor and accelerates fruit ripening. Bunch thinning also significantly reduces the crop burden and improves the physicochemical characteristics of the fruit. Therefore, the present study aims to appraise the combined impact of irrigation, sulfate of potash (SOP) fertilizer, and fruit bunch thinning practices on fruit yield and quality of date palm cv. Sukary under the agro-climatic condition of the Al-Qassim (Buraydah) region, Kingdom of Saudi Arabia. To achieve these objectives, four irrigation levels (80, 100, 120, and 140% of crop evapotranspiration (ETc), three SOP fertilizer doses (2.5, 5, and 7.5 kg palm-1), and three fruit bunch thinning levels (8, 10, and 12 bunches palm-1) were applied. The effects of these factors were determined on fruit bunch traits, physicochemical fruit characteristics, fruit texture profile, fruit color parameters, fruit skin separation disorder, fruit grading, and yield attributes. The findings of the present study showed that the lowest (80% ETc) and highest (140% ETc) irrigation water levels, lowest SOP fertilizer dose (2.5 kg palm-1), and retaining the highest number of fruit bunch per tree (12 bunches) had a negative effect on most yield and quality attributes of date palm cv. Sukary. However, maintaining the date palm water requirement at 100 and 120% ETc, applying SOP fertilizer doses at 5 and 7.5 kg palm-1, and retaining 8-10 fruit bunches per palm had significantly positive effects on the fruit yield and quality characteristics. Therefore, it is concluded that applying 100% ETc irrigation water combined with a 5 kg palm-1 SOP fertilizer dose and maintaining 8-10 fruit bunches per palm is more equitable than other treatment combinations.

2.
Preprint in English | medRxiv | ID: ppmedrxiv-21268431

ABSTRACT

BackgroundAs the SARS-CoV2 Omicron variant spreads in several countries, healthcare workers (HCWs) perceptions and worries regarding vaccine effectiveness and boosters warrant reassessment. MethodsAn online questionnaire among HCWs in Saudi Arabia (KSA) was distributed from Dec 1st to 6th 2021 to assess their perceptions, vaccine advocacy to the Omicron variant, and their perception of the effectivness of infection prevention measures and vaccination to prevent its spread, their Omicron variant related worries in comparison to the other variants, and their agreement with mandatory vaccination in general for adults. ResultsAmong the 1285 HCW participants, two-thirds were female, 49.8 % were nurses, 46.4% were physicians, and 50.0% worked in tertiary care hospitals. 66.9% considered vaccination to be the most effective way to prevent the spread of the Omicron variant and future variants. The respondents however perceived social distancing (78.0%), universal masking (77.8%), and avoiding unnecessary travel (71.4%) as slightly superior to vaccination to prevent the spread of SARS-CoV-2 variants. HCWs aging 55 or older agreed singficanlty with vaccine ineffictivness to control Omicron spread, while those who believed in non-pharmacolgical infection prevention measures agreed signifcantly with vaccination for that purpose. Male HCWs had a significant agreement with mandatory vaccination of all eligible adult populations. On the other hand, unwilling HCWs to receive the vaccine had strong disagreements with mandatory vaccination. ConclusionsThe current study in the first week of Omicron showed that only two-thirds of HCWs felt that vaccination was the best option to prevent the spread of the Omicron variant, indicating the need for further motivation campaigns for vaccination and booster dose. HCWs had a strong belief in infection prevention measures to contain the spread of SARS-CoV-2 variants that should be encouraged and augmented.

3.
Preprint in English | medRxiv | ID: ppmedrxiv-21268377

ABSTRACT

BackgroundAs the COVID-19 Omicron variant emerged and spread globally at an alarming speed, healthcare workers (HCWs) uncertainties, worries, resilience, and coping strategies warrant assessment. The COVID-19 pandemic had a severe psychological impact on HCWs, including the development of Post-Traumatic Stress symptoms. Specific subgroups of HCWs, such as front-line and female workers, were more prone to poor mental health outcomes and difficulties facing stress. MethodsThe responses to an online questionnaire among HCWs in Saudi Arabia (KSA) were collected December 1-5, 2021, aiming to assess their Omicron variants uncertainties, worries, resilience, and coping strategies. Three validated instruments were used to achieve the studys goals: the Brief Resilient Coping Scale, the Standard Stress Scale (SSS), and the Intolerance of Uncertainty Scale (IUS) - Short Form. ResultsThe online survey was completed by 1285 HCWs. Females made up the majority (64%). The BRCS score of resilient coping was negatively and substantially linked with the SSS score of stress (r=-0.313, p = 0.010). Furthermore, the IUS had a positive and significant relationship with stress (r=0.326, p= 0.010). Increased stress levels were linked to a considerable drop in resilient coping scores. Furthermore, being a Saudi HCW or a nurse was linked to a significant reduction in resilient coping ratings. Coping by following healthcare authorities preventative instructions and using the WHO website as a source of information was linked to a considerable rise in resilient coping. ConclusionsFollowing the emergence of the Omicron variant of SARS-CoV-2 in late 2021, a rapid investigation into the correlates of stress and resilient coping among the HCWs in KSA was conducted. The negative association between resilient coping and stress was clearly shown, as well as how underlying intolerance of uncertainty is linked to higher stress among HCWs quickly following the development of a new infectious threat. The study provides early insights to develop and promote coping strategies for emerging SARS-CoV-2 variants.

4.
J Shoulder Elbow Surg ; 30(7S): S8-S13, 2021 Jul.
Article in English | MEDLINE | ID: mdl-33892121

ABSTRACT

BACKGROUND: Preoperative radiographic assessment of osteophyte and loose body locations is critical in planning an arthroscopic débridement for primary elbow osteoarthritis. The purpose of this study was to evaluate the effectiveness of radiographs and computed tomography (CT) in localizing osteophytes and loose bodies. METHODS: A consecutive series of 36 patients with primary elbow osteoarthritis was investigated with radiographs and multiaxial 2-dimensional CT prior to elbow arthroscopy. The location of osteophytes and loose bodies was assessed in 9 anatomic locations by 2 fellowship-trained upper extremity surgeons. The diagnostic effectiveness of both imaging modalities was evaluated by calculating the sensitivity and specificity and compared to the gold standard of elbow arthroscopy. Inter- and intrarater percentage agreement between the observations was calculated using Kappa score. RESULTS: The mean sensitivity for detecting osteophytes in the 9 different anatomic locations was 46% with radiographs and 98% with CT, whereas the mean specificity was 66% and 21% for radiographs and CT, respectively. The mean sensitivity and specificity for loose body detection with radiography were 49% and 89%, respectively, whereas CT had a mean sensitivity of 98% and specificity of 47%. The overall inter-rater percentage agreement between the surgeons in detecting osteophytes and loose bodies on radiographs was 80% and 85%, respectively, whereas on CT it was 95% for detecting osteophytes and 91% for loose bodies. CONCLUSION: CT has greater sensitivity than radiographs for the detection of osteophytes and loose bodies in primary elbow osteoarthritis. The lower specificity of CT may be due to this imaging modality's ability to detect small osteophytes and loose bodies that may not be readily identified during elbow arthroscopy. Radiographs have an inferior inter-rater percentage agreement compared with CT. CT is a valuable preoperative investigation to assist surgeons in identifying the location of osteophytes and loose bodies in patients undergoing surgery for primary elbow osteoarthritis.


Subject(s)
Elbow Joint , Osteoarthritis , Arthroscopy , Elbow , Elbow Joint/diagnostic imaging , Elbow Joint/surgery , Humans , Osteoarthritis/diagnostic imaging , Osteoarthritis/surgery , Radiography , Tomography, X-Ray Computed
5.
J Family Med Prim Care ; 9(3): 1522-1527, 2020 Mar.
Article in English | MEDLINE | ID: mdl-32509643

ABSTRACT

BACKGROUND AND OBJECTIVES: Healthcare research work contributes significantly to the advancement and development of medical education. Numerous studies have demonstrated the efficiency and productivity of student participation in medical research work, which has a positive impact on the health system. In this study, we intended to examine medical students' knowledge and attitudes regarding, and actual participation in, medical research work. METHODS: This cross-sectional study was conducted on 184 medical students of Batterjee Medical College. The students received a paper-based survey questionnaire, containing multiple parts that related to their knowledge and attitudes regarding, and actual participation in, research work. One-way analysis of variance was utilized for the comparison of the average scores of the academic specialization groups. RESULTS: One hundred and forty-three participants completed the questionnaire, with a response rate of 78%. The overall average scores for the students' knowledge and attitudes regarding, and actual participation in, research work were 57.2%, 76%, and 31.5%, respectively. Medicine students obtained significantly higher average scores than the students of other specializations in terms of the scale of knowledge and attitudes regarding, and actual participation in, research work. The principal barriers that deterred the students from undertaking research work were poor time management (68.5%), inadequate feedback (64.3%), and a lack of research skills (54.5%). CONCLUSION: Medical students showed a low level of knowledge relating to research work and infrequently participated in them, but they reported a positive attitude toward research work activity. Extensive work is needed to overcome several barriers, such as poor time management and insufficient research skills.

6.
Rev. otorrinolaringol. cir. cabeza cuello ; 78(1): 89-98, mar. 2018. ilus
Article in Spanish | LILACS | ID: biblio-902820

ABSTRACT

La vía nasal, ya sea mediante la inhalación o aspiración, se ha convertido en una ruta atractiva para quienes abusan de sustancias, principalmente por la fácil accesibilidad y la rápida absorción sistémica, además de evitar las consecuencias asociadas al uso de drogas intravenosas (enfermedades de transmisión). El objetivo de esta revisión es presentar una actualización de diversas sustancias que son utilizadas por esta vía, enfocándose en aquellas en las que se ha documentado daños en la anatomía nasal.


The nasal route, either by inhalation or aspiration, has become an attractive route for substances abusers, mainly because of its easy accessibility, rapid systemic absorption and also to avoid the consequences associated with intravenous drug use (transmitted diseases). The objective of this review is to present an update of various substances that are used by this route, focusing on those in which damage to the nasal anatomy has been documented.


Subject(s)
Humans , Administration, Intranasal , Substance-Related Disorders , Benzodiazepines/administration & dosage , Designer Drugs/administration & dosage , Inhalant Abuse , Substance Abuse, Oral/classification , Central Nervous System Stimulants/antagonists & inhibitors , Methamphetamine/administration & dosage , Methylphenidate/administration & dosage , Nitrites/administration & dosage
7.
Arab J Urol ; 15(1): 68-73, 2017 Mar.
Article in English | MEDLINE | ID: mdl-28275522

ABSTRACT

OBJECTIVES: To establish a baseline reference range for flaccid (FPL) and stretched penile lengths (SPL) in adult males and to compare with reports from different nationalities, as concerns over penile size are common among men and currently the number of men seeking help for the perceived problem of a 'short' penis is increasing. SUBJECTS AND METHODS: Over a 1-year period, FPL and SPL measurements were taken from males undergoing medical examination in the outpatient clinic of the Al-Karama Teaching Hospital, using a rigid centimetre ruler. The correlation between penile length and age was investigated. RESULTS: In all, 223 apparently healthy males were included in this study with a mean (SD; range) age of 41.3 (15.0; 20-77) years. The mean (SD; range) FPL was 9.8 (2.0; 5-17) cm and the SPL was 12.6 (1.9; 7.5-19.5) cm. Statistical analysis showed that penile length is increased in older age (>55 years). A penile length nomogram was constructed, showing that the 50th percentiles of FPL and SPL were 9.0 and 12.5 cm, respectively. CONCLUSION: Our data establish a baseline reference range for adult male penile lengths in the Capital of Iraq (Baghdad), which should be useful for urologists when counselling patients.

8.
ISRN Urol ; 2013: 523625, 2013.
Article in English | MEDLINE | ID: mdl-23691368

ABSTRACT

Objective. To confirm safety and feasibility of double J stent insertion under local anesthesia and to assess the effect of detailed explanation and observing double J stent insertion on pain experience of male patients. Material and Methods. Eighty consenting males, randomized and divided prospectively into group A, who were allowed to observe DJ stent insertion, and group B, were not observed. All DJ stent insertions were done by senior urologist in operating urology room with or without fluoroscopy guidance. At the end of the procedure the vital signs and duration of the procedure were documented and patients were asked to fill unmarked 100 mm visual analogue pain scale (VAS) as soon as the surgeon leaves operating room. Results. Mean age of entire study group was 38.8 years; the majority of the patients had DJ stent insertion for obstructed ureteric stone, with uneventful outcomes. Postprocedural systolic blood pressure and mean pain using VAS showed statistically significant difference between groups A and B. Conclusion. DJ stent insertion under local anesthesia is a safe and feasible procedure. We recommended self-watching and detailed explanation to patients who underwent DJ stent insertion to reduce the pain and anxiety associated with the procedure.

9.
Turk J Urol ; 39(2): 90-5, 2013 Jun.
Article in English | MEDLINE | ID: mdl-26328087

ABSTRACT

OBJECTIVE: The functional outcome following hypospadias repair is as important as the cosmetic outcome. Currently, structured scoring systems, patient questionnaires and evaluations of photographs and uroflowmetry are used to assess the results of hypospadias repair. In the present study, we assessed the outcomes of two-stage hypospadias repair using Hypospadias Objective Scoring Evaluation-HOSE and measures of uroflowmetry. MATERIAL AND METHODS: Over a period of eight years, from January 1997 to December 2004, 126 hypospadias patients were treated, 90 of these patients received two-stage repairs and 36 patients received single-stage repairs. HOSE questionnaire and uroflowmetry data were obtained to evaluate the long-term outcome of the two-stage hypospadias repairs. RESULTS: The age at the time of assessment ranged from 8 to 23 years-old, with a mean follow-up time of 39.78 months. Thirty-five patients had proximal hypospadias, and 20 had distal hypospadias. Of the 55 patients who received complete two-stage hypospadias repair and agreed to participate in the study, nineteen patients had acceptable HOSE scores and 36 patients had non-acceptable scores. The uroflow rates of 43 of the subjects were below the fifth percentile in three patients, equivocal (between the 5(th) and 25(th) percentile) in four patients and above the 25(th) percentile in 36 patients. CONCLUSION: Two-stage repair is a suitable technique for all types of hypospadias with varying outcomes. HOSE and uroflowmetry are simple, easy, non-invasive and non-expensive tools for objectively assessing the long-term outcomes of hypospadias repair.

10.
J Clin Pediatr Dent ; 36(4): 389-92, 2012.
Article in English | MEDLINE | ID: mdl-23019838

ABSTRACT

OBJECTIVES: To investigate whether behavior during hydroxyzine administration predicts children's behavior during dental treatment and whether behavior during treatment is affected by the complexity of treatment. MATERIALS AND METHOD: 118 children aged 2 to 6.5 years old were treated under conscious sedation with oral premedication (3.7 mg/kg of hydroxyzine in a concentration of 50 mg/5 cc. hydroxyzine) and 50% nitrous oxide/oxygen sedation. Children were divided in two age groups: aged 2 to < or = 4 years old, and aged 4 > to 6 years old. Behavior during first examination; cooperation during premedication administration, cooperation during nitrous oxide nose-mask placement, behavior during dental treatment, treatment duration and complexity of treatment were recorded. RESULTS: More children in the older group took the premedication willingly (p = 0.026). Significant correlation (p = 0.002) between behavior during examination and nitrous oxide mask acceptance was found in the older age group. No correlation was found regarding the cooperation during premedication intake and behavior during treatment within and between age groups. No statistical differences within the groups and between the groups were found between complexity of treatment and behavior during treatment. CONCLUSIONS: Premedication intake is not a reliable predictive tool for behavior during treatment in children aged 2-6.5 years. Complexity of treatment does not influence behavior during treatment in children aged 2-6.5 years.


Subject(s)
Child Behavior/drug effects , Dental Care/psychology , Hydroxyzine/administration & dosage , Hypnotics and Sedatives/administration & dosage , Preanesthetic Medication , Administration, Oral , Age Factors , Anesthesia, Dental/methods , Anesthetics, Inhalation/administration & dosage , Child , Child, Preschool , Conscious Sedation/methods , Cooperative Behavior , Crowns/psychology , Dental Prophylaxis/psychology , Dental Restoration, Permanent/psychology , Forecasting , Humans , Masks , Nitrous Oxide/administration & dosage , Oxygen/administration & dosage , Pit and Fissure Sealants/therapeutic use , Pulpotomy/psychology , Retrospective Studies , Time Factors , Tooth Extraction/psychology
11.
East Mediterr Health J ; 16(11): 1153-8, 2010 Nov.
Article in English | MEDLINE | ID: mdl-21218739

ABSTRACT

Mothers of children with bronchial asthma consecutively admitted to Aseer central hospital, Saudi Arabia (n = 171), were interviewed using a questionnaire based on the Chicago Community Asthma Survey to study their knowledge and behaviours concerning bronchial asthma. The least known information among mothers was the complications of bronchial asthma. Breathing exercises during asthma attacks were the least practised behaviour. In a multivariate analysis, significant risk factors for poor knowledge and behaviours among mothers were female sex of the child, illiterate mother and young age of mother (< 30 years). More education is needed to help the mothers of asthmatic children to acquire the necessary knowledge and practices to care for their children.


Subject(s)
Asthma/prevention & control , Attitude to Health , Child Care/methods , Health Behavior , Health Knowledge, Attitudes, Practice , Mothers , Adult , Asthma/complications , Asthma/epidemiology , Breathing Exercises , Child , Child Care/psychology , Child, Preschool , Educational Status , Female , Humans , Logistic Models , Male , Middle Aged , Mothers/education , Mothers/psychology , Multivariate Analysis , Patient Admission , Risk Factors , Saudi Arabia/epidemiology , Surveys and Questionnaires
12.
(East. Mediterr. health j).
in English | WHO IRIS | ID: who-118046

ABSTRACT

Mothers of children with bronchial asthma consecutively admitted to Aseer central hospital, Saudi Arabia [n = 171], were interviewed using a questionnaire based on the Chicago Community Asthma Survey to study their knowledge and behaviours concerning bronchial asthma. The least known information among mothers was the complications of bronchial asthma. Breathing exercises during asthma attacks were the least practised behaviour. In a multivariate analysis, significant risk factors for poor knowledge and behaviours among mothers were female sex of the child, illiterate mother and young age of mother [< 30 years]. More education is needed to help the mothers of asthmatic children to acquire the necessary knowledge and practices to care for their chiIdren


Subject(s)
Health Knowledge, Attitudes, Practice , Behavior , Mothers , Surveys and Questionnaires , Risk Factors , Asthma
13.
J Appl Microbiol ; 106(2): 486-95, 2009 Feb.
Article in English | MEDLINE | ID: mdl-19054226

ABSTRACT

AIMS: To identify lactic acid bacteria (LAB) present in Moroccan dairy products to establish and preserve their microbial species diversity. METHODS AND RESULTS: Thirty-seven samples were collected from different farms. A total of 146 LAB were isolated and subjected to (GTG)(5)-PCR analysis. Comparison of the profiles with data available at the Moroccan Coordinated Collections of Micro-organisms allowed identification of 85 isolates. The remaining 61 were subjected to SDS-PAGE analysis of whole cell proteins. Comparison of the profiles with data available at the Belgian Coordinated Collections of Micro-organisms allowed identification of 43 isolates. Several of the remaining 18 isolates exhibited identical protein electrophoretic fingerprints. Therefore, eight representatives of them were subjected to partial pheS gene sequencing which allowed identification of all remaining isolates. In raw milk, six genera were found while in 'lben', three were found. This is the first report of Leuconostoc kimchii in dairy products. CONCLUSIONS: LAB diversity was established using a stepwise polyphasic identification approach. It used the expertise of both research bodies involved in this study and proved to be cost-effective for the identification of all isolates. SIGNIFICANCE AND IMPACT OF THE STUDY: To establish LAB diversity in Moroccan dairy products which could be a source of strains with specific properties.


Subject(s)
Food Microbiology , Lactobacillaceae/isolation & purification , Milk/microbiology , Animals , Bacterial Typing Techniques , Cultured Milk Products/microbiology , DNA Fingerprinting , DNA, Bacterial/genetics , Electrophoresis, Polyacrylamide Gel , Lactobacillaceae/classification , Lactobacillaceae/genetics , Leuconostoc/classification , Leuconostoc/genetics , Leuconostoc/isolation & purification , Morocco
14.
Ir J Med Sci ; 177(4): 397-8, 2008 Dec.
Article in English | MEDLINE | ID: mdl-17588193

ABSTRACT

BACKGROUND: Vascular injuries following cholecystectomy are a known entity though the incidence is low. More frequently we are seeing cases of right hepatic artery pseudo aneurysm post cholecystectomy after the advent of the laparoscopic approach. METHODS: We report a case of multiple right hepatic artery aneurysms as a complication of cholecystectomy in a 71-year-old patient. RESULTS: The diagnosis was confirmed by angiogram, and the patient was treated successfully with coil embolisation. CONCLUSION: Though it is a rare complication, early diagnosis and treatment of postoperative pseudo aneurysm is essential to prevent life threatening bleeding.


Subject(s)
Aneurysm, False/complications , Cholecystectomy, Laparoscopic/adverse effects , Embolization, Therapeutic , Hepatic Artery/injuries , Postoperative Complications , Aged , Aneurysm, False/therapy , Female , Hepatic Artery/pathology , Humans
15.
Clin Microbiol Infect ; 13(9): 893-901, 2007 Sep.
Article in English | MEDLINE | ID: mdl-17617184

ABSTRACT

A mixed outbreak caused by vancomycin-resistant Enterococcus raffinosus and Enterococcus faecium carrying the vanA gene was analysed. The outbreak occurred in a large hospital in Poland and affected 27 patients, most of whom were colonised, in three wards, including the haematology unit. The E. raffinosus isolates had a high-level multiresistant phenotype and were initially misidentified as Enterococcus avium; their unambiguous identification was provided by multilocus sequence analysis. The molecular investigation demonstrated the clonal character of the E. raffinosus outbreak and the polyclonal structure of the E. faecium isolates. All of the isolates carried the same Tn1546-like element containing an IS1251-like insertion sequence, located on a c. 50-kb conjugative plasmid. One of the E. faecium clones, found previously to be endemic in the hospital, was probably the source of the plasmid. The results of the study suggest that difficulties in identification may have led to an underestimate of the importance of E. raffinosus in vancomycin-resistant enterococci (VRE) control strategies.


Subject(s)
Cross Infection/epidemiology , Disease Outbreaks , Enterococcus faecium/pathogenicity , Gram-Positive Bacterial Infections/epidemiology , Vancomycin Resistance/genetics , Bacterial Proteins/metabolism , DNA Transposable Elements , Electrophoresis, Gel, Pulsed-Field , Enterococcus/genetics , Enterococcus/isolation & purification , Enterococcus faecium/drug effects , Enterococcus faecium/genetics , Enterococcus faecium/isolation & purification , Gram-Positive Bacterial Infections/microbiology , Hospitals , Humans , Protein Kinases/metabolism , Transcription Factors/metabolism
17.
J Microbiol Methods ; 67(3): 597-602, 2006 Dec.
Article in English | MEDLINE | ID: mdl-16887225
18.
Appl Environ Microbiol ; 71(9): 5107-15, 2005 Sep.
Article in English | MEDLINE | ID: mdl-16151093

ABSTRACT

We analyzed the usefulness of rpoA, recA, and pyrH gene sequences for the identification of vibrios. We sequenced fragments of these loci from a collection of 208 representative strains, including 192 well-documented Vibrionaceae strains and 16 presumptive Vibrio isolates associated with coral bleaching. In order to determine the intraspecies variation among the three loci, we included several representative strains per species. The phylogenetic trees constructed with the different genetic loci were roughly in agreement with former polyphasic taxonomic studies, including the 16S rRNA-based phylogeny of vibrios. The families Vibrionaceae, Photobacteriaceae, Enterovibrionaceae, and Salinivibrionaceae were all differentiated on the basis of each genetic locus. Each species clearly formed separated clusters with at least 98, 94, and 94% rpoA, recA, and pyrH gene sequence similarity, respectively. The genus Vibrio was heterogeneous and polyphyletic, with Vibrio fischeri, V. logei, and V. wodanis grouping closer to the Photobacterium genus. V. halioticoli-, V. harveyi-, V. splendidus-, and V. tubiashii-related species formed groups within the genus Vibrio. Overall, the three genetic loci were more discriminatory among species than were 16S rRNA sequences. In some cases, e.g., within the V. splendidus and V. tubiashii group, rpoA gene sequences were slightly less discriminatory than recA and pyrH sequences. In these cases, the combination of several loci will yield the most robust identification. We can conclude that strains of the same species will have at least 98, 94, and 94% rpoA, recA, and pyrH gene sequence similarity, respectively.


Subject(s)
Bacterial Proteins/genetics , Bacterial Typing Techniques , Phylogeny , Sequence Analysis, DNA , Vibrio/classification , Animals , Anthozoa/microbiology , DNA-Directed RNA Polymerases/genetics , Escherichia coli Proteins/genetics , Genes, Suppressor , Rec A Recombinases/genetics , Species Specificity , Transferases/genetics , Vibrio/genetics , Vibrionaceae/classification , Vibrionaceae/genetics
19.
J Clin Microbiol ; 43(5): 2224-30, 2005 May.
Article in English | MEDLINE | ID: mdl-15872246

ABSTRACT

The relatedness among 91 Enterococcus strains representing all validly described species was investigated by comparing a 1,102-bp fragment of atpA, the gene encoding the alpha subunit of ATP synthase. The relationships observed were in agreement with the phylogeny inferred from 16S rRNA gene sequence analysis. However, atpA gene sequences were much more discriminatory than 16S rRNA for species differentiation. All species were differentiated on the basis of atpA sequences with, at a maximum, 92% similarity. Six members of the Enterococcus faecium species group (E. faecium, E. hirae, E. durans, E. villorum, E. mundtii, and E. ratti) showed > 99% 16S rRNA gene sequence similarity, but the highest value of atpA gene sequence similarity was only 89.9%. The intraspecies atpA sequence similarities for all species except E. faecium strains varied from 98.6 to 100%; the E. faecium strains had a lower atpA sequence similarity of 96.3%. Our data clearly show that atpA provides an alternative tool for the phylogenetic study and identification of enterococci.


Subject(s)
Enterococcus/genetics , Escherichia coli Proteins/genetics , Animals , Base Sequence , DNA Primers , Enterococcus/classification , Enterococcus/isolation & purification , Escherichia coli/genetics , Fimbriae Proteins , Humans , Phylogeny , Polymerase Chain Reaction , Regression Analysis
20.
Int J Syst Evol Microbiol ; 55(Pt 2): 913-917, 2005 Mar.
Article in English | MEDLINE | ID: mdl-15774685

ABSTRACT

Six new Vibrio-like isolates originating from different species of bleached and healthy corals around Magnetic Island (Australia) were investigated using a polyphasic approach. Phylogenetic analyses based on 16S rRNA, recA and rpoA gene sequences split the isolates in two new groups. Strains LMG 22223(T), LMG 22224, LMG 22225, LMG 22226 and LMG 22227 were phylogenetic neighbours of Photobacterium leiognathi LMG 4228(T) (95.6 % 16S rRNA gene sequence similarity), whereas strain LMG 22228(T) was related to Enterovibrio norvegicus LMG 19839(T) (95.5 % 16S rRNA gene sequence similarity). The two new groups can be distinguished from closely related species on the basis of several phenotypic features, including fermentation of d-mannitol, melibiose and sucrose, and utilization of different compounds as carbon sources, arginine dihydrolase activity, nitrate reduction, resistance to the vibriostatic agent O/129 and the presence of fatty acids 15 : 0 iso and 17 : 0 iso. The names Photobacterium rosenbergii sp. nov. (type strain LMG 22223(T)=CBMAI 622(T)=CC1(T)) and Enterovibrio coralii sp. nov. (type strain LMG 22228(T)=CBMAI 623(T)=CC17(T)) are proposed to accommodate these new isolates. The G+C contents of the DNA of the two type strains are respectively 47.6 and 48.2 mol%.


Subject(s)
Anthozoa/metabolism , Anthozoa/microbiology , Photobacterium/classification , Vibrionaceae/classification , Animals , Bacterial Typing Techniques , DNA, Bacterial/analysis , DNA, Ribosomal/analysis , DNA-Directed RNA Polymerases/genetics , Genes, rRNA , Molecular Sequence Data , Phenotype , Photobacterium/genetics , Photobacterium/metabolism , Phylogeny , RNA, Ribosomal, 16S/genetics , Rec A Recombinases/genetics , Sequence Analysis, DNA , Species Specificity , Vibrionaceae/genetics , Vibrionaceae/metabolism
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