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J Mol Biol ; 375(1): 257-69, 2008 Jan 04.
Article in English | MEDLINE | ID: mdl-17999929

ABSTRACT

One mechanism by which bacteria can escape the action of beta-lactam antibiotics is the production of metallo-beta-lactamases. Inhibition of these enzymes should restore the action of these widely used antibiotics. The tetrameric enzyme L1 from Stenotrophomonas maltophilia was used as a model system to determine a series of high-resolution crystal structures of apo, mono and bi-metal substituted proteins as well as protein-inhibitor complexes. Unexpectedly, although the apo structure revealed only few significant structural differences from the holo structure, some inhibitors were shown to induce amino acid side-chain rotations in the tightly packed active site. Moreover, one inhibitor employs a new binding mode in order to interact with the di-zinc center. This structural information could prove essential in the process of elucidation of the mode of interaction between a putative lead compound and metallo-beta-lactamases, one of the main steps in structure-based drug design.


Subject(s)
Anti-Bacterial Agents/antagonists & inhibitors , Enzyme Inhibitors/chemistry , Stenotrophomonas maltophilia/enzymology , beta-Lactamase Inhibitors , Anti-Bacterial Agents/metabolism , Apoenzymes/chemistry , Binding Sites , Captopril/metabolism , Cephalosporins/chemistry , Escherichia coli/genetics , Hydrogen Bonding , Hydrogen-Ion Concentration , Indicators and Reagents/chemistry , Inhibitory Concentration 50 , Ligands , Models, Molecular , Molecular Structure , Moxalactam/metabolism , Protein Binding , Protein Structure, Secondary , Stereoisomerism , Substrate Specificity , Sulfates/chemistry , Water/chemistry , X-Ray Diffraction , Zinc/metabolism , beta-Lactamases/metabolism
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