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1.
Pulmonology ; 29(3): 200-206, 2023.
Article in English | MEDLINE | ID: mdl-34728168

ABSTRACT

BACKGROUND: High flow oxygen therapy (HFO) is a widely used intervention for pulmonary complications. Amid the coronavirus infectious disease 2019 (COVID-19) pandemic, HFO became a popular alternative to conventional oxygen supplementation therapies. Risk stratification tools have been repurposed -and new ones developed- to estimate outcome risks among COVID-19 patients. This study aims to provide a simple risk stratification system to predict invasive mechanical ventilation (IMV) or death among COVID-19 inpatients on HFO. METHODS: Among 529 adult inpatients with COVID-19 pneumonia, we selected unadjusted clinical risk factors for developing the composite endpoint of IMV or death. The risk for the primary outcome by each category was estimated using a Cox proportional hazards model. Bootstrapping was used to validate the results. RESULTS: Age above 62, eGFR under 60 ml/min, room air SpO2 ≤89 % upon admission, history of hypertension, history of diabetes, and any comorbidity (cancer, cardiovascular disease, COPD/ asthma, hypothyroidism, or autoimmune disease) were considered for the score. Each of the six criteria scored 1 point. The score was further simplified into 4 categories: 1) 0 criteria, 2) 1 criterion, 3) 2-3 criteria, and 4) ≥4 criteria. Taking the first category as the reference, risk estimates for the primary endpoint were HR; 2.94 [1.67 - 5.26], 4.08 [2.63 - 7.05], and 6.63 [3.74 - 11.77], respectively. In ROC analysis, the AUC for the model was 0.72. CONCLUSIONS: Our score uses simple criteria to estimate the risk for IMV or death among COVID-19 inpatients with HFO. Higher category reflects consistent increases in risk for the endpoint.


Subject(s)
COVID-19 , Communicable Diseases , Humans , Adult , COVID-19/epidemiology , COVID-19/therapy , SARS-CoV-2 , Oxygen/therapeutic use , Inpatients
3.
New Microbes New Infect ; 34: 100658, 2020 Mar.
Article in English | MEDLINE | ID: mdl-32194964

ABSTRACT

Bacteria of the genus Gordonia are rarely involved in human infections. We report here the case of a 30-year-old man from Guinea Buissau with mycetoma of the foot. 16S DNA sequencing after surgical biopsy identified Gordonia westfalica. To our knowledge, this is the first report of human infection caused by G. westfalica.

4.
Eur J Clin Microbiol Infect Dis ; 39(3): 559-567, 2020 Mar.
Article in English | MEDLINE | ID: mdl-31758438

ABSTRACT

We assessed the performance of the VITEK® MS IVD V3.0 matrix-assisted laser desorption ionization - time of flight mass spectrometry (MALDI-ToF MS) V3.0 database for the identification of Nocardia spp. as compared with targeted DNA sequencing. A collection of 222 DNA sequence-defined Nocardia spp. strains encompassing 18 different species present or not in the database was tested. Bromocresol purple agar (BCP) and Columbia agar +5% sheep's blood (COS) culture media were used together with two different preparation steps: direct smear and a "3 attempts" procedure that covered (1) spotting of an extract, (2) new spotting of the same extract, and (3) spotting of a new extract. The direct smear protocol yielded low correct identification rates (≤ 15% for both media) whereas protein extraction yielded correct identification results (> 67% regardless of the media used.). The use of 2 additional attempts using repeat or new extracts increased correct identification rates to 87% and 91% for BCP and COS, respectively. When using the 3 attempts procedure, the best identification results, independent of media types, were obtained for N. farcinica and N. cyriacigeorgica (100%). Identification attempts 2 and 3 allowed to increase the number of correct identifications (BCP, +20%; COS, +13%). The enhancement in performance during attempts 2 and 3 was remarkable for N. abscessus (81% for both media) and low prevalence species (BCP, 70%; COS, 85%). Up to 3.4% and 2.4% of the strains belonging to species present in the database were misidentified with BCP and COS media, respectively. In 1.9% of the cases for BCP and 1.4% for COS, these misidentifications concerned a species belonging to the same phylogenetic complex. Concerning strains that are not claimed in the V3.0 database, N. puris and N. goodfellowi generated "No identification" results and 100% of the strains belonging to N. arthritidis, N.cerradoensis, and N. altamirensis yielded a misidentification within the same phylogenetic complex. Vitek® MS IVD V3.0 is an accurate and useful tool for identification of Nocardia spp.


Subject(s)
Bacteriological Techniques , Databases, Factual , Nocardia Infections/diagnosis , Nocardia Infections/microbiology , Nocardia/classification , Algorithms , Bacterial Proteins/isolation & purification , Humans , Nocardia/metabolism , Reagent Kits, Diagnostic , Reproducibility of Results , Workflow
5.
J Endocrinol Invest ; 43(3): 289-304, 2020 Mar.
Article in English | MEDLINE | ID: mdl-31489568

ABSTRACT

PURPOSE: The effect of the sodium-glucose 2 (SGLT-2) inhibitors on microvascular complications remains uncertain. We performed a systematic review to determine the efficacy of the SGLT-2 inhibitors on microvascular outcomes in patients with type 2 diabetes. METHODS: A comprehensive search was performed using Ovid, MEDLINE, EMBASE, Web of Science, and Scopus from inception to May 2019. Randomized trials comparing SGLT-2 inhibitors with placebo or other medication for type 2 diabetes for ≥ 4 weeks were included. Diabetes-related microvascular complications such as nephropathy, retinopathy, neuropathy, and peripheral vascular disease were evaluated. A random-effect model using mean differences for continuous outcomes and risk ratio for dichotomous outcomes was used to synthesize data. PROSPERO (CRD 42017076460). RESULTS: A total of 40 RCTs with overall moderate quality of evidence were included. SGLT-2 inhibitors reduced the risk of renal-replacement therapy (0.65; 95% CI 0.54-0.79), renal death (0.57; 95% CI 0.49-0.65), and progression of albuminuria (0.69; 95% CI 0.66-0.73). Conversely, they appeared ineffective in maintaining eGFR (0.33; 95% CI - 0.74 to 1.41) or reducing serum creatinine (- 0.07; 95% CI - 0.26 to 0.11), whereas urine albumin-creatinine ratio (- 23.4; 95% CI - 44.6 to - 2.2) was reduced. Risk of amputation was non-significant (1.30; 95% CI 0.93-1.83). No available data were found regarding neuropathy and retinopathy to perform a quantitative analysis. CONCLUSION: SGLT-2 inhibitors may reduce the risk of renal patient-important outcomes but fail to improve surrogate outcomes. Apparently, no increased risk of amputations was observed with these medications. No data were available regarding other microvascular complications.


Subject(s)
Diabetes Mellitus, Type 2/drug therapy , Diabetic Angiopathies/drug therapy , Hypoglycemic Agents/therapeutic use , Sodium-Glucose Transporter 2 Inhibitors/therapeutic use , Humans , Treatment Outcome
6.
Rev Med Interne ; 40(7): 457-461, 2019 Jul.
Article in French | MEDLINE | ID: mdl-31103241

ABSTRACT

INTRODUCTION: Hemophagocytic lymphohistiocytosis (HLH) is a rare syndrome frequently secondary to infectious disease, especially in immuno-compromised patients. We report a HLH secondary to disseminated nocardiosis and Streptomyces spp pulmonary infection. CASE REPORT: A 69-years-old women had recent subcutaneous nodules of the forearms and loins associated with peripheral neuropathy and pulmonary nodule of the right upper lobe. Cutaneous biopsy revealed granuloma. Cutaneous lesions worsened and the patient developed a HLH with probable cardiac and neurological involvement, associated with cutaneous granulomatosis and diffuse polyclonal lymphocyte proliferation. Nocardia PCR was positive in cutaneous biopsy. Pulmonary samples revealed Streptomyces in culture and Nocardia in PCR. The evolution under antibiotic treatment was favorable. CONCLUSION: Recent diagnosis of HLH without obvious etiology should lead to etiological investigation, including the search for infections with slow-growing bacteria such as Nocardia or Streptomyces spp.


Subject(s)
Gram-Positive Bacterial Infections/complications , Granuloma, Respiratory Tract/microbiology , Lymphohistiocytosis, Hemophagocytic/microbiology , Nocardia , Respiratory Tract Infections/microbiology , Streptomyces , T-Lymphocytes/immunology , Aged , Chemotaxis, Leukocyte/physiology , Coinfection/diagnosis , Coinfection/immunology , Diagnosis, Differential , Female , Gram-Positive Bacterial Infections/diagnosis , Gram-Positive Bacterial Infections/microbiology , Granuloma, Respiratory Tract/diagnosis , Humans , Lymphohistiocytosis, Hemophagocytic/complications , Lymphohistiocytosis, Hemophagocytic/diagnosis , Macrophage Activation Syndrome/diagnosis , Macrophage Activation Syndrome/microbiology , Nocardia/isolation & purification , Nocardia/pathogenicity , Nocardia Infections/complications , Nocardia Infections/diagnosis , Respiratory Tract Infections/diagnosis , Skin Diseases, Bacterial/diagnosis , Skin Diseases, Bacterial/microbiology , Streptomyces/isolation & purification , Streptomyces/pathogenicity , T-Lymphocytes/physiology
7.
Clin Microbiol Infect ; 25(4): 489-495, 2019 Apr.
Article in English | MEDLINE | ID: mdl-29933049

ABSTRACT

OBJECTIVES: Nocardia, a Gram-positive bacterium, is responsible for rare and severe infections. Accurate microbiological data are essential to guide antibiotic treatment. Our primary objective was to describe species identification and results of antimicrobial susceptibility testing (AST) for Nocardia isolates analysed over a 6-year period. Secondary objectives were to study temporal trends in species distribution and AST results. METHODS: We retrospectively analysed results from Nocardia isolates sent between January 2010 and December 2015 to a French laboratory dedicated to Nocardia (Observatoire Français des Nocardioses). Species identification was obtained by amplification and sequencing of a 600-bp fragment of the 16S rRNA gene (for all isolates) and of hsp65 (when required). AST was performed using disk diffusion. RESULTS: We included 793 Nocardia isolates, mostly from the lungs (53.8%). The most frequent species were Nocardia farcinica (20.2%), Nocardia abscessus complex (19.9%) and Nocardia nova complex (19.5%). The proportion of N. farcinica increased significantly over time from 13% in 2010 to 27.6% in 2014. Linezolid, amikacin, trimethoprim-sulfamethoxazole, minocycline and imipenem were the most frequently identified active antibiotics with, respectively, 0% (0/734), 2.9% (21/730), 5.4% (40/734), 9.4% (69/734) and 19.5% (143/732) of isolates not susceptible. Nocardia farcinica was frequently not susceptible to cefotaxime (118/148, 79.7% of the isolates), but only about 5% of Nocardia cyriacigeorgica and N. abscessus complex isolates were not susceptible to cefotaxime. CONCLUSIONS: In this first epidemiological study of Nocardia isolated from human samples in France, N. farcinica was the species most frequently identified and its prevalence increased over time.


Subject(s)
Anti-Bacterial Agents/therapeutic use , Nocardia Infections/drug therapy , Nocardia Infections/epidemiology , Nocardia/classification , Nocardia/isolation & purification , Adolescent , Adult , Aged , Aged, 80 and over , Amikacin/therapeutic use , Bacterial Proteins/genetics , Child , Child, Preschool , Disk Diffusion Antimicrobial Tests , Female , France/epidemiology , Humans , Imipenem/therapeutic use , Linezolid/therapeutic use , Male , Middle Aged , Minocycline/therapeutic use , Nocardia/genetics , Nocardia Infections/microbiology , RNA, Ribosomal, 16S/genetics , Retrospective Studies , Trimethoprim, Sulfamethoxazole Drug Combination/therapeutic use , Young Adult
8.
Biomed Res Int ; 2018: 7314054, 2018.
Article in English | MEDLINE | ID: mdl-29888277

ABSTRACT

This study aims at genetic characterization and phylogenetic relationships of Nocardia brasiliensis focusing by using housekeeping rrs, hsp65, and sodA genes. N. brasiliensis is the species responsible for 80% of cases of actinomycetoma, one form of cutaneous nocardiosis which occurs mainly in tropical regions reaching immunocompetent patients in which the disease can lead to amputation. We analyze 36 indigenous cases of N. brasiliensis that happened in France. Phylogenetic analysis targeting rrs gene showed no robustness at phylogenetic nodes level. However, the use of a concatenation of hsp65 and sodA genes showed that the tested strains surprisingly ranked in 3 well-defined genotypes. Genotypes 2 and 3 were phylogenetically closer to each other and both diverged from genotype 1 sustained by a high bootstrap of 81%. This last genotype hosts all the cases of pulmonary forms (3), the sole cerebral form, and almost all the cases of immunocompromised patients (3 out of 4). Moreover, excepting one of them, all the strains belonging to this group present a susceptibility to imipenem which is not the case in the other genotypes that rarely count among them strains being susceptible to this drug. The haplotype diversity (Hd) of hsp65 (0.927) and sodA (0.885) genes was higher than that of rrs (0.824). For this gene, we obtained 16 polymorphic sites whereas, for hsp65 and sodA genes, up to 27 and 29 were identified, respectively. This study reveals that these two genes have an important genetic discriminatory power for the evaluation of the intraspecies genetic variability of N. brasiliensis and they may be useful for identification purposes at species level. This study also reveals the possible existence of a new species harbored by genotype 1.


Subject(s)
Bacterial Proteins/genetics , Genetic Variation , Nocardia Infections/genetics , Superoxide Dismutase-1/genetics , France/epidemiology , Humans , Nocardia/genetics , Nocardia/pathogenicity , Nocardia Infections/epidemiology , Nocardia Infections/microbiology , Nocardia Infections/pathology , Phylogeny
9.
J Mycol Med ; 28(3): 531-537, 2018 Sep.
Article in French | MEDLINE | ID: mdl-29773433

ABSTRACT

Nocardial brain abscess is often occurring in immunocompromised patients. It is uncommon in immunocompetent individuals. Here, the authors describe a case of cerebral and pulmonary nocardiosis mimicking a metastatic tumor in an apparently health 40-year-old Algerian male. The patient presented multiple brain abscess revealed by inaugural epileptic seizure. He was afebrile and presented with left hemiparesis. Staging imaging showed a nodular lung lesion in the apical segment of the right lower lobe. The patient underwent double craniotomy for resection of the lesion. Culture of the resected specimen isolated Nocardia abscessus. The patient was initially started on intravenous trimethoprim-sulfamethoxazole and intravenous amikacine. He was switched to oral trimethoprim-sulfamethoxazole. He finished seven months of antibiotic therapy with a good clinical response. Imaging revealed reduction in the brain abscess and a complete resolution of the lung lesion. Cotrimoxazole was stopped after twelve months of therapy. After two years, the health status of our patient improves day after day. He is however regularly under medical supervision for control exams.


Subject(s)
Brain Abscess/diagnosis , Lung Diseases, Fungal/diagnosis , Nocardia Infections/diagnosis , Nocardia/isolation & purification , Adult , Algeria , Brain Abscess/microbiology , Humans , Immunocompetence , Lung Diseases, Fungal/immunology , Male , Nocardia Infections/immunology
10.
New Microbes New Infect ; 19: 96-116, 2017 Sep.
Article in English | MEDLINE | ID: mdl-28794885

ABSTRACT

Currently for bacterial identification and classification the rrs gene encoding 16S rRNA is used as a reference method for the analysis of strains of the genus Nocardia. However, it does not have enough polymorphism to differentiate them at the species level. This fact makes it necessary to search for molecular targets that can provide better identification. The sodA gene (encoding the enzyme superoxide dismutase) has had good results in identifying species of other Actinomycetes. In this study the sodA gene is proposed for the identification and differentiation at the species level of the genus Nocardia. We used 41 type species of various collections; a 386 bp fragment of the sodA gene was amplified and sequenced, and a phylogenetic analysis was performed comparing the genes rrs (1171 bp), hsp65 (401 bp), secA1 (494 bp), gyrB (1195 bp) and rpoB (401 bp). The sequences were aligned using the Clustal X program. Evolutionary trees according to the neighbour-joining method were created with the programs Phylo_win and MEGA 6. The specific variability of the sodA genus of the genus Nocardia was analysed. A high phylogenetic resolution, significant genetic variability, and specificity and reliability were observed for the differentiation of the isolates at the species level. The polymorphism observed in the sodA gene sequence contains variable regions that allow the discrimination of closely related Nocardia species. The clear specificity, despite its small size, proves to be of great advantage for use in taxonomic studies and clinical diagnosis of the genus Nocardia.


Actualmente, para la identificación y clasificación bacteriana se utiliza como método de referencia la secuenciación el gen rrs que codifica al rRNA16S, en el caso del análisis de cepas del género Nocardia, sin embargo, no tiene el suficiente polimorfismo para diferenciarlas a nivel de especie lo que hace necesaria la búsqueda de blancos moleculares que puedan proporcionar una mejor identificación. El gen sodA (que codifica la enzima superóxido dismutasa) ha tenido buenos resultados en la identificación de especies de otros Actinomicetos. En este estudio se propone para la identificación y diferenciación a nivel de especie del género Nocardia. Se utilizaron 41 especies Tipo de diversas colecciones, se amplificó y secuenció un fragmento de 386 pb del gen sodA y se realizó un análisis filogenético comparando los genes rrs (1171 pb) hsp65(401pb) secA1 (494pb), gyrB (1195pb) y rpoB (401pb), las secuencias fueron alineadas utilizando el programa Clustal X, los árboles evolutivos de acuerdo con el método de "Neighbor-Joining"se hicieron con el programa Phylo_win y Mega 6. Se analizó la variabilidad específica del gen sodA del género Nocardia presentando una alta resolución filogenética, una variabilidad genética importante, especificidad y confiabilidad para la diferenciación de los aislados a nivel de especie. El polimorfismo observado en la secuencia del gen sodA contiene regiones variables que posibilitan la discriminación de especies de Nocardia estrechamente relacionadas, y una clara especificidad, a pesar de su pequeño tamaño, demostrando ser de gran ventaja para utilizarse en estudios taxonómicos y en el diagnóstico clínico del género Nocardia.

11.
Transplant Proc ; 47(6): 1998-2002, 2015.
Article in English | MEDLINE | ID: mdl-26293088

ABSTRACT

With the limitations of surgical reconstructive procedures, the growing number of gunshot wounds, burns, and work accidents in Mexico that result in complex facial deformities leaves only 1 option-face transplantation. The National Institute of Medical Sciences and Nutrition "Salvador Zubiran" (INCMNSZ) has performed transplants since 1971. We at INCMNSZ undertook the 1st bilateral upper-limb transplantation in Latin America in 2012. We are willing to continue in this manner toward conducting face transplantation at our institute. To this end, we identified and solved various challenges. The 1st challenge was acceptance and inclusion of vascularized composite allotransplantation (VCA) within general Mexican health law and approval of the face transplantation procedure. Subsequently, the health ministry provided a license to INCMNSZ to perform the procedure. The 2nd challenge concerned who would pay for the procedure. The costs will be paid by the patient (1st-party payer), social security institutions (2nd-party payers), and the health ministry (3rd-party payer). The 3rd challenge was to maintain ongoing surgical training of the team using cadavers. The fourth challenge was to locate donors; toward this end, we developed a campaign for promoting face donation in social media, making a comic book, and training organ and tissue coordinators to further VCA. Thus, INCMNSZ has the legal, administrative, medical, and surgical wherewithal to accomplish face transplantation.


Subject(s)
Face/surgery , Facial Injuries/surgery , Facial Transplantation/methods , Tissue Donors , Cadaver , Facial Injuries/epidemiology , Humans , Incidence , Mexico/epidemiology , Vascularized Composite Allotransplantation/methods
12.
Odontol. pediatr. (Lima) ; 13(1): 41-47, ene.-jun.2014. ilus
Article in Spanish | LILACS, LIPECS | ID: lil-781159

ABSTRACT

La enfermedad de Von Willebrand es de origen autosómica dominante que se caracteriza por sangrado prolongado con recuento plaquetario normal debido a una deficiencia cualitativa o cuantitativa del factor Von Willebrand, que es una proteína necesaria para iniciar la adherencia plaquetaria al subendotelio e iniciar el proceso hemostático. Una deficiencia de este factor causa sangrados prolongados de diferente intensidad. Reporte del caso: Se presentó al Hospital del Niño DIF, Hidalgo, un paciente masculino de7 años 6 meses de edad, el cual fue diagnosticado a los 4 años con enfermedad de Von Willebrand y remitido para realizar exodoncias dentales. El paciente no contaba con subtipo de la enfermedad. Se decide realizar la rehabilitación integral en quirófano transfundiendo crioprecipitados. Debido a la presencia de lesiones cariosas de diversos grados y evidencia de infección de origen apical, se realizaron 4 tratamientos pulpares, 4 coronas de acero cromo y 3 extracciones con medios hemostáticos y sutura de heridas. Conclusiones: La rehabilitación odontológica bajo anestesia general de este paciente se consideró exitosa, ya que se realizó en una sola cita, transfundiendo crioprecipitados, sin tener complicaciones durante el procedimiento...


The Von Willebrand disease is an autosomal dominant origin characterized by prolonged bleeding with normal platelet count due to a qualitative or quantitative deficiency of Von Willebrand factor, a protein required to initiate platelet adhesion to sub-endothelium and initiate the process hemostatic. A deficiency of this factor causes prolonged bleeding of varying intensity. Case report: A male patient 7 years 6 months old, was presented to the Hospital del Niño DIF, Hidalgo, who was diagnosed at age 4 with Von Willebrand disease and referred for dental extractions. The patient had no disease subtype. It was decided to perform comprehensive surgical rehabilitation transfusing cryoprecipitate. Due to the presence of carious lesions of diverse degrees and evidence of infection of apical origin, 4 pulp treatments, 4 chrome steel crowns, 3 extractions were realized with hemostatic and wound closure means. Conclusions: The dental rehabilitation under general anesthesia in this patient was considered successful, as was done in one appointment, and transfusing cryoprecipitate, without complications during the procedure...


Subject(s)
Humans , Male , Child , von Willebrand Diseases , Tooth Extraction , Pediatric Dentistry
13.
Aging Clin Exp Res ; 25 Suppl 1: S83-4, 2013 Oct.
Article in English | MEDLINE | ID: mdl-24046043

ABSTRACT

The distal radius fractures (DRFs) are the second most common fracture in the elderly population. Despite their frequency, the optimal treatment of these fractures remains controversial. Several dogmatic myths on DRFs management may adversely affect their outcome and despite a strong trend versus surgical options, systematic reviews suggest that conservative treatment remains the safest option for DRFs in most cases.


Subject(s)
Radius Fractures/surgery , Radius Fractures/therapy , Aged , Female , Humans , Orthopedics/methods , Osteoporotic Fractures/diagnosis , Osteoporotic Fractures/surgery , Osteoporotic Fractures/therapy , Radius Fractures/diagnosis , Randomized Controlled Trials as Topic , Treatment Outcome
14.
Ann Dermatol Venereol ; 140(4): 287-90, 2013 Apr.
Article in French | MEDLINE | ID: mdl-23567231

ABSTRACT

BACKGROUND: Mycetoma is a chronic skin and soft tissue infection encountered in the dry tropical regions and are caused by fungi (eumycetoma) or bacteria (actinomycetoma). PATIENTS AND METHODS: A 25-year-old man consulted at the hospital on Mayotte Island for a left knee injury sustained 10 years earlier in a motorcycle accident with broken skin occurring in Anjouan in the Comoro Islands. Clinical and histological diagnosis of mycetoma was made, and in the absence of microbiological diagnosis, empirical antifungal therapy was initiated. Given the poor outcome, new biopsies were performed and resulted in the identification of Nocardia otitidiscaviarum. More than 1 year later, the patient had fully recovered and after administration of several and extended antibiotic courses including cotrimoxazole and linezolid. DISCUSSION: Bacterial mycetomas are usually described in semi-arid regions and the occurrence of this disease is unexpected in humid tropical areas such as the Comoro Islands. N. otitidiscaviarum is rarely involved in this infection, particularly in Africa.


Subject(s)
Knee/microbiology , Mycetoma/diagnosis , Nocardia/isolation & purification , Accidents, Traffic , Acetamides/therapeutic use , Adult , Anti-Infective Agents/therapeutic use , Comoros , Humans , Knee Injuries/complications , Linezolid , Male , Mycetoma/drug therapy , Oxazolidinones/therapeutic use , Skin/injuries , Trimethoprim, Sulfamethoxazole Drug Combination/therapeutic use , Tropical Climate
15.
J Clin Microbiol ; 51(2): 696-700, 2013 Feb.
Article in English | MEDLINE | ID: mdl-23224088

ABSTRACT

We report the first case of cerebral abscess due to a novel species of Nocardia in a heart transplant patient and describe the antimicrobial susceptibility of this isolate. As our patient was intolerant to trimethoprim-sulfamethoxazole, we also discuss alternative therapeutic options in brain abscess due to Nocardia sp.


Subject(s)
Brain Abscess/microbiology , Immunocompromised Host , Nocardia Infections/microbiology , Nocardia/classification , Nocardia/genetics , Adult , Anti-Bacterial Agents/pharmacology , Anti-Bacterial Agents/therapeutic use , Brain Abscess/diagnosis , Brain Abscess/drug therapy , Female , Genes, Bacterial , Heart Transplantation/adverse effects , Humans , Microbial Sensitivity Tests , Molecular Sequence Data , Nocardia/drug effects , Nocardia Infections/diagnosis , Nocardia Infections/drug therapy , Phylogeny
16.
J Mycol Med ; 22(1): 1-7, 2012 Mar.
Article in English | MEDLINE | ID: mdl-23177807

ABSTRACT

BACKGROUND: Mexico has the largest number of clinical cases of actinomycetoma in North and South America. Species originally identified by less specific methods have been recently reclassified as other known species or as new species. OBJECTIVE: To assess, by 16S rRNA gene sequencing and phenotypic methods, the species distribution of 18 human clinical isolates originally identified as N. brasiliensis, some of them isolated between 1947 and 1959 in Mexico City. METHODS: Clinical isolates came from the Hospital General, "Dr. Manuel Gea Gonzalez", and Instituto Nacional de Diagnóstico y Referencia Epidemiológica (INDRE) in Mexico, D.F. The strains used in this study included 15 clinical strains isolated between 1947 and 1959 that were originally identified as N. brasiliensis and three more strains obtained in 2007 identified as Nocardia spp. The isolates were identified genotypically by sequencing the 16S rRNA gene, and their phenotypic profiles were obtained with the API Coryne(®) system. Antibiotic susceptibility patterns were tested according to the protocol of the Comité de l'antibiogramme de la Société française de microbiologie[4]. RESULTS: According to 16S rRNA gene, sequencing were identified among 18 human clinical isolates as Nocardia farcinica (n=11) and Nocardia brasiliensis (n=7). A high number of the strains were susceptible to the majority of the antibiotics tested. The phenotypic profiles of the strains were quite uniform for N. farcinica and some variability was observed for N. brasiliensis strains. CONCLUSION: N. farcinica was the most prevalent species identified. Modern methodologies should be applied in clinical laboratories to accurately identify etiological agents.


Subject(s)
Nocardia Infections/microbiology , Nocardia/isolation & purification , Anti-Bacterial Agents/pharmacology , Bacterial Typing Techniques , Genotype , Humans , Mexico/epidemiology , Microbial Sensitivity Tests , Nocardia/classification , Nocardia/drug effects , Nocardia/genetics , Nocardia Infections/epidemiology , Phenotype , Phylogeny , RNA, Ribosomal, 16S/genetics
17.
J Clin Microbiol ; 50(8): 2702-7, 2012 Aug.
Article in English | MEDLINE | ID: mdl-22692743

ABSTRACT

Matrix-associated laser desorption ionization-time of flight mass spectrometry (MALDI-TOF MS) is a rapid and simple microbial identification method. Previous reports using the Biotyper system suggested that this technique requires a preliminary extraction step to identify Gram-positive rods (GPRs), a technical issue that may limit the routine use of this technique to identify pathogenic GPRs in the clinical setting. We tested the accuracy of the MALDI-TOF MS Andromas strategy to identify a set of 659 GPR isolates representing 16 bacterial genera and 72 species by the direct colony method. This bacterial collection included 40 C. diphtheriae, 13 C. pseudotuberculosis, 19 C. ulcerans, and 270 other Corynebacterium isolates, 32 L. monocytogenes and 24 other Listeria isolates, 46 Nocardia, 75 Actinomyces, 18 Actinobaculum, 11 Propionibacterium acnes, 18 Propionibacterium avidum, 30 Lactobacillus, 21 Bacillus, 2 Rhodococcus equi, 2 Erysipelothrix rhusiopathiae, and 38 other GPR isolates, all identified by reference techniques. Totals of 98.5% and 1.2% of non-Listeria GPR isolates were identified to the species or genus level, respectively. Except for L. grayi isolates that were identified to the species level, all other Listeria isolates were identified to the genus level because of highly similar spectra. These data demonstrate that rapid identification of pathogenic GPRs can be obtained without an extraction step by MALDI-TOF mass spectrometry.


Subject(s)
Bacteria, Aerobic/chemistry , Bacteria, Aerobic/classification , Bacteriological Techniques/methods , Gram-Positive Bacteria/chemistry , Gram-Positive Bacteria/classification , Spectrometry, Mass, Matrix-Assisted Laser Desorption-Ionization/methods , Humans , Sensitivity and Specificity , Time Factors
18.
Rev Cubana Med Trop ; 63(1): 44-51, 2011.
Article in Spanish | MEDLINE | ID: mdl-23437536

ABSTRACT

INTRODUCTION: Given the importance of dengue in America, it is indispensable to know the cause of death of the infected people and to evaluate the few necropsy studies available. OBJECTIVE: To describe and to analyze the relevant clinical and pathological findings in fatal dengue cases of dengue in a Venezuelan endemic area. METHODS: Eight fatal cases, according to clinical and epidemiological dengue criteria and/or confirmed by complete serological tests were studied after complete clinical necropsy. The tissues were processed by standard histopathological techniques. RESULTS: All these cases showed severe lung disease (diffuse alveolar damage, non cardiogenic pulmonary edema, thromboembolism, bronchopneumonia, pneumonitis, intralveolar hemorrhage). Six presented with pleural or abdominal effusion. Focal hepatic necrosis was found in two cases. The cause of death was related to respiratory failure in six (6) cases secondary to lung disease; two with hypovolemic shock, and one developed liver failure. CONCLUSION: the studied dengue cases showed fatal severe pulmonary compromise leading to death, unlike those reported in other studies of autopsies in The Americas. They also developed multiple organ failure, which in most cases led to death not directly associated to hypovolemic shock. These findings in autopsies will allow designing therapeutic strategies to avoid mortality.


Subject(s)
Dengue/diagnosis , Dengue/mortality , Aged , Child , Child, Preschool , Dengue/pathology , Female , Humans , Infant , Male , Middle Aged , Venezuela/epidemiology
19.
Braz. j. microbiol ; 41(2): 329-332, Apr.-June 2010. ilus
Article in English | LILACS | ID: lil-545338

ABSTRACT

We report a case of cavitary pneumonia caused by N. otitidiscaviarum in a man with diabetes mellitus and thrombocytopenia treated with systemic corticosteroid. Taxonomic identification involved phenotypic testing and molecular identification that was carried out by DNA sequencing of the 16SrRNA gene.


Subject(s)
Humans , Male , Adult , Adrenal Cortex Hormones , Base Sequence , Drug Resistance, Microbial , Lung Diseases , Nocardia/genetics , Nocardia/isolation & purification , Nocardia Infections/diagnosis , Nocardia Infections/genetics , Classification , Diagnostic Techniques and Procedures , Methods , Phenotype
20.
Braz J Microbiol ; 41(2): 329-32, 2010 Apr.
Article in English | MEDLINE | ID: mdl-24031500

ABSTRACT

We report a case of cavitary pneumonia caused by N. otitidiscaviarum in a man with diabetes mellitus and thrombocytopenia treated with systemic corticosteroid. Taxonomic identification involved phenotypic testing and molecular identification that was carried out by DNA sequencing of the 16SrRNA gene.

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