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1.
J R Soc Interface ; 15(139)2018 02.
Article in English | MEDLINE | ID: mdl-29491181

ABSTRACT

Compartments are ubiquitous throughout biology, and they have very likely played a crucial role at the origin of life. Here we assume that a protocell, which is a compartment enclosing functional components, requires N such components in order to be evolvable. We calculate the timescale in which a minimal evolvable protocell is produced. We show that when protocells fuse and share information, the timescales polynomially in N By contrast, in the absence of fusion, the worst-case scenario is exponential in N We discuss the implications of this result for the origin of life and other biological processes.


Subject(s)
Biological Evolution , Cell Membrane/metabolism , Models, Biological , Origin of Life
2.
PLoS Comput Biol ; 14(2): e1005947, 2018 02.
Article in English | MEDLINE | ID: mdl-29447150

ABSTRACT

Viral infections are one of the major causes of death worldwide, with HIV infection alone resulting in over 1.2 million casualties per year. Antiviral drugs are now being administered for a variety of viral infections, including HIV, hepatitis B and C, and influenza. These therapies target a specific phase of the virus's life cycle, yet their ultimate success depends on a variety of factors, such as adherence to a prescribed regimen and the emergence of viral drug resistance. The epidemiology and evolution of drug resistance have been extensively characterized, and it is generally assumed that drug resistance arises from mutations that alter the virus's susceptibility to the direct action of the drug. In this paper, we consider the possibility that a virus population can evolve towards synchronizing its life cycle with the pattern of drug therapy. The periodicity of the drug treatment could then allow for a virus strain whose life cycle length is a multiple of the dosing interval to replicate only when the concentration of the drug is lowest. This process, referred to as "drug tolerance by synchronization", could allow the virus population to maximize its overall fitness without having to alter drug binding or complete its life cycle in the drug's presence. We use mathematical models and stochastic simulations to show that life cycle synchronization can indeed be a mechanism of viral drug tolerance. We show that this effect is more likely to occur when the variability in both viral life cycle and drug dose timing are low. More generally, we find that in the presence of periodic drug levels, time-averaged calculations of viral fitness do not accurately predict drug levels needed to eradicate infection, even if there is no synchronization. We derive an analytical expression for viral fitness that is sufficient to explain the drug-pattern-dependent survival of strains with any life cycle length. We discuss the implications of these findings for clinically relevant antiviral strategies.


Subject(s)
Antiviral Agents/pharmacology , Drug Resistance, Viral/genetics , HIV Infections/drug therapy , HIV Infections/virology , HIV-1/genetics , Virus Replication/drug effects , Anti-HIV Agents/pharmacology , Basic Reproduction Number , Computational Biology , Computer Simulation , Drug Tolerance , Genotype , Humans , Models, Theoretical , Phenotype , Stochastic Processes , Virus Diseases/drug therapy
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