Your browser doesn't support javascript.
loading
Show: 20 | 50 | 100
Results 1 - 20 de 38
Filter
Add more filters










Publication year range
1.
Microorganisms ; 12(1)2024 Jan 17.
Article in English | MEDLINE | ID: mdl-38258013

ABSTRACT

The South China Sea (SCS) is abundant in marine microbial resources with high primary productivity, which is crucial for sustaining the coral reef ecosystem and the carbon cycle. Currently, research on the diversity of culturable bacteria in the SCS is relatively extensive, yet the culturable bacteria in coral reefs has been poorly understood. In this study, we analyzed the bacterial community structure of seawater samples among Daya Bay (Fujian Province), Qionghai (Hainan Province), Xisha Islands, and the southern South China Sea based on culturable methods and detected their abilities for agar degradation. There were 441 bacterial strains, belonging to three phyla, five classes, 43 genera, and 101 species, which were isolated by marine agar 2216E (MA; Becton Dickinson). Strains within Gammaproteobacteria were the dominant group, accounting for 89.6% of the total bacterial isolates. To investigate vibrios, which usually correlated with coral health, 348 isolates were obtained from TCBS agar, and all isolates were identified into three phylum, three classes, 14 orders, 25 families, and 48 genera. Strains belonging to the genus Vibrio had the greatest number (294 strains), indicating the high selectivity of TCBS agar for vibrios. Furthermore, nineteen strains were identified as potentially novel species according to the low 16S rRNA gene similarity (<98.65%), and 28 strains (15 species) had agar-degrading ability. These results indicate a high diversity of culturable bacteria in the SCS and a huge possibility to find novel and agar-degrading species. Our study provides valuable microbial resources to maintain the stability of coral ecosystems and investigate their roles in the marine carbon cycle.

2.
Environ Sci Pollut Res Int ; 31(1): 1576-1588, 2024 Jan.
Article in English | MEDLINE | ID: mdl-38048003

ABSTRACT

Extensive coral bleaching events can result in catastrophic degradation of coral reefs and reorganization of coral communities. In the present study, we analyzed the spatial differences in coral bleaching and possible reasons of large-scale coral bleaching, based on the results of a survey carried out in the northern South China Sea in 2020. In addition, we have continuously monitored the sea surface temperature (SST) of the northernmost Weizhou Island for more than six years. The living coral cover at Weizhou Island (W), Xuwen Nature Reserve (X), and Haihua Island (H) was relatively high at 24.6% ± 4.8%, 12.1% ± 3.8%, and 8.1% ± 2.6%, respectively, whereas their bleaching rates were 9.7% ± 2.6%, 9.7% ± 3.3%, and 6.9% ± 2.1%, respectively. Among them, the living coral cover of W was significantly different from those of X and H, whereas the bleaching rate was not significantly different among the three areas. In all three areas, the massive and encrusting corals predominate and exhibit relatively high bleaching rates, with Porites lutea and Bernardpora stutchburyi being the dominant species. In addition, the temperature monitoring results of Weizhou Island for six consecutive years showed that the critical SST of coral bleaching was 31.5 ℃. The monitoring results also showed that the average SST of Weizhou Island was 32.1 ℃, exceeding 32 ℃ in July 2020 for up to 533 h. The longest continuous time when the SST exceeded 32 ℃ was 97 h. These findings indicated that the coral bleaching event that occurred in the Beibu Gulf during 2020 was a large-scale and high-temperature transient event that presented a relatively homogeneous threat to the coral communities. We inferred that this sudden heat stress event was caused by the enclosed tidal current in the Beibu Gulf, which prevented the southern upwelling from reaching the north, as well as by the inability of the SST to decrease without rainfall caused by typhoon cyclones. Our findings suggested that abnormal heat waves can result in coral bleaching at high latitudes and even coral reef degradation. Furthermore, our study provides a new perspective for investigating the self-recovery and reorganization of coral communities following accumulated coral bleaching.


Subject(s)
Anthozoa , Coral Reefs , Animals , Temperature , Climate , China
3.
Int J Syst Evol Microbiol ; 73(11)2023 Nov.
Article in English | MEDLINE | ID: mdl-37997883

ABSTRACT

A Gram-stain-negative, facultative anaerobic, methylphosphonate-decomposing, motile by a polar flagellum and rod-shaped marine bacterium, designated S4B1T, was isolated from the surface seawater collected from the Yongle Atoll (Xisha Islands, PR China). The pairwise alignment showed the highest sequence similarity of 97.5 and 96.6 % to Vibrio aestuarianus subsp. cardii 12_122_3T3T and Vibrio atypicus HHS02T, respectively. Phylogenetic analysis based on 16S rRNA gene and the phylogenomic analysis of single-copy genes showed that strain S4B1T belonged to the genus Vibrio and formed a close branch with Vibrio qingdaonensis ZSDZ65T. Growth of strain S4B1T occurred at 4-30 °C (optimum, 28 °C), at pH 6.0-8.0 (optimum, pH 7.0) and in the presence of 2-7 % (w/v) NaCl (optimum, 3 %). The predominant fatty acids (>10 %) were C16 : 0, iso-C16 : 0 and summed feature 3 (C16 : 1 ω7c or/and C16 : 1 ω6c). The DNA G+C content of the assembled genomic sequence was 44.3 mol%. Average nucleotide identity (ANI) values between S4B1T and its reference species were lower than the threshold for species delineation (95-96 %), in which its highest ANI value with V. qingdaonensis ZSDZ65T was 87.0 %. In silico DNA-DNA hybridization further showed that strain S4B1T had less than 70 % similarity to its relatives. On the basis of the polyphasic evidence, strain S4B1T is proposed to represent a novel species of the genus Vibrio, for which the name Vibrio methylphosphonaticus sp. nov. is proposed. The type strain is S4B1T (=KCTC 92311T=MCCC 1K06168T).


Subject(s)
Fatty Acids , Vibrio , Fatty Acids/chemistry , Sequence Analysis, DNA , Phylogeny , RNA, Ribosomal, 16S/genetics , DNA, Bacterial/genetics , Base Composition , Bacterial Typing Techniques , Seawater/microbiology , China
4.
Environ Microbiome ; 18(1): 77, 2023 Oct 23.
Article in English | MEDLINE | ID: mdl-37872593

ABSTRACT

BACKGROUND: Coral reefs are one of the most biodiverse and productive ecosystems, providing habitat for a vast of species. Reef-building scleractinian corals with a symbiotic microbiome, including bacteria, archaea, viruses and eukaryotic microbes, are referred to coral holobionts. Among them, coral diseases, mainly caused by Vibrio spp., have significantly contributed to the loss of coral cover and diversity. Habitat filtering across the globe has led to a variety structure of marine bacterial communities. Coral species, quantity and characteristics are significant differences between the Xisha Islands and Daya Bay (Guangdong Province). Thus, the Vibrio communities may be distinct between coral rich and poor areas. RESULTS: Through comparison of Vibrio dynamics between coral-rich (Xisha Islands) and coral-poor (Daya Bay) locations, we uncovered differences in Vibrio abundance, diversity, community composition and assembly mechanisms associated with corals. The higher abundance of Vibrio in coral rich areas may indicate a strong interaction between vibrios and corals. V. campbellii, Paraphotobacterium marinum and V. caribbeanicus were widely distributed in both coral rich and poor areas, likely indicating weak species specificity in the coral-stimulated growth of Vibrio. Random-forest prediction revealed Vibrio species and Photobacterium species as potential microbial indicators in the coral rich and coral poor areas, respectively. Ecological drift rather than selection governed the Vibrio community assembly in the Xisha Islands. Comparatively, homogenizing selection was more important for the Daya Bay community, which may reflect a role of habitat filtration. CONCLUSION: This study revealed the different distribution pattern and assembly mechanism of Vibrio spp. between coral rich and poor areas, providing the background data for the research of Vibrio community in coral reef areas and may help the protection of coral reef at the biological level. The main reasons for the difference were different number and species of corals, environmental (e.g., temperature) and spatial factors. It reflected the strong interaction between Vibrio and corals, and provided a new perspective for the investigation of Vibrio in coral reef ecosystem.

5.
Appl Environ Microbiol ; 89(7): e0054323, 2023 07 26.
Article in English | MEDLINE | ID: mdl-37314342

ABSTRACT

Coral reefs are among the most biodiverse ecosystems, providing habitats for various organisms. Studies on coral bleaching have been increasing recently, but little is known about the distribution and community assembly of coral pathogenic bacteria (e.g., several Vibrio species). We elucidated the distribution pattern and interaction relationships of total bacteria and Vibrio spp. in sediments from the Xisha Islands, which are characterized by their high coverage and diversity of coral resources. Vibrio spp. showed significantly higher relative abundance values in the Xisha Islands (1.00 × 108 copies/g) than in other areas (approximately 1 × 104 to 9.04 × 105 copies/g), indicating that the coral bleaching event of 2020 may have promoted the bloom of vibrios. A spatial shift in community composition was observed between the northern (Photobacterium rosenbergii and Vibrio ponticus) and southern (Vibrio ishigakensis and Vibrio natriegens) sites, accompanied by a clear distance-decay pattern. The spatial distance and coral species (e.g., Acroporidae and Fungiidae) had much greater correlations with the Vibrio community than did environmental factors. However, complex mechanisms may exist in the community assembly of Vibrio spp. due to the large proportion of unexplained variation. Stochastic processes may play an important role, as shown by the neutral model. Vibrio harveyi had the highest relative abundance (77.56%) and niche breadth, compared to other species, and it was negatively correlated with Acroporidae, likely reflecting its strong competitive ability and adverse effects on specific corals. Our study provides insights into the bloom and underlying assembly mechanisms of sedimentary vibrios in the Xisha Islands, thereby contributing to identify the potential indicator of coral bleaching and provide inspiration for the environmental management of coral reef areas. IMPORTANCE Coral reefs exert important roles in maintaining the sustainability of marine ecosystems but decline worldwide due to various drivers, especially pathogenic microorganisms. Here, we investigated the distribution pattern and interactions of total bacteria and Vibrio spp. in the sediments from Xisha Islands during the coral bleaching event of 2020. Our results showed that the abundances of Vibrio (1.00 × 108 copies/g) were high across the whole sites, indicating the bloom of sedimentary Vibrio spp. Coral pathogenic Vibrio species were abundant in the sediments, likely reflecting adverse effects on several kinds of corals. The compositions of the Vibrio spp. were separated by geographical location, which was mainly attributable to the spatial distance and coral species. Overall, this work contributes by providing evidence for the outbreak of coral pathogenic vibrios. The pathogenic mechanism of the dominant species (especially V. harveyi) should be comprehensively considered by laboratory infection experiments in the future.


Subject(s)
Anthozoa , Vibrio , Animals , Ecosystem , Coral Bleaching , Islands , Coral Reefs , Anthozoa/microbiology , Vibrio/genetics
6.
Sci Rep ; 13(1): 5860, 2023 Apr 11.
Article in English | MEDLINE | ID: mdl-37041282

ABSTRACT

The hemispherical dynamic pressure motor (HDPM) has the advantages of high speed, wear resistance and stability, which is widely used in inertial instruments to produce the gyroscopic effect. The ultra-thin gas film between the stator and rotor of the motor provides dynamic pressure lubrication and bearing capacity, whose dynamic characteristics determine the motor performance. However, the influence mechanism of some key factors such as ball center distance on the film characteristics is not clear, which has become the bottleneck restricting the performance improvement of HDPMs. Therefore, in this paper, a series of gas film similarity models were solved under different geometric and working parameters, and the influence law of the ball center distance, rotor displacement and stopping process on the aerodynamic characteristics was obtained, the results show that these primary parameters have significant effects on the pressure distribution, resistance moment and frictional heat of the ultra-thin gas film. This work can not only provide a theoretical basis for the aerodynamic performance optimization of HDPMs, but also serve as a reference for the design of other aerodynamic instruments.

7.
Genes (Basel) ; 14(3)2023 03 11.
Article in English | MEDLINE | ID: mdl-36980967

ABSTRACT

Reef-building coral species of the order Scleractinia play an important role in shallow tropical seas by providing an environmental base for the ecosystem. The molecular data of complete mitochondrial genome have become an important source for evaluating phylogenetic and evolutionary studies of Scleractinia. Here, the complete mitogenome of Homophyllia bowerbanki (Milne Edwards and Haime, 1857), collected from Nansha Islands of the South China Sea, was sequenced for the first time through a next-generation sequencing method. H. bowerbanki is the first species of its genus for which the mitogenome was sequenced. This mitogenome was 18,154 bp in size and included two transfer RNA genes (tRNAs), 13 protein-coding genes (PCGs), and two ribosomal RNA genes (rRNAs). It showed a similar gene structure and gene order to the other typical scleractinians. All 17 genes were encoded on the H strand and the total GC content was 33.86% in mitogenome. Phylogenetic analysis (maximum likelihood tree method) showed that H. bowerbanki belonged to the "Robust" clade and clustered together with other two species in the family Lobophylliidae based on 13 PCGs. The mitogenome can provide significant molecular information to clarify the evolutionary and phylogenetic relationships between stony corals and to facilitate their taxonomic classification; it can also support coral species monitoring and conservation efforts.


Subject(s)
Anthozoa , Genome, Mitochondrial , Animals , Genome, Mitochondrial/genetics , Phylogeny , Ecosystem , Anthozoa/genetics , RNA, Ribosomal/genetics , RNA, Transfer/genetics , RNA, Transfer/chemistry
8.
Sensors (Basel) ; 23(3)2023 Jan 20.
Article in English | MEDLINE | ID: mdl-36772260

ABSTRACT

The error coefficients of the pendulous integrating gyroscopic accelerometer (PIGA) mainly include the bias, scale factor, and nonlinear error. Previous works have fully studied and suppressed the bias and scale factor of PIGAs. At present, the nonlinear error is the most critical factor restricting the measurement accuracy of PIGAs. To address this barrier, a study on the analysis and suppression of the nonlinear error of PIGAs at the instrument level was carried out. Firstly, the error model of a PIGA is established by kinematics and dynamics analyses. Then, nonlinear error is analyzed based on the established model. Finally, a suppression method for the nonlinear error is proposed based on the analysis results. The nonlinear error analysis found that (1) the nonlinear error includes a quadratic term error caused by unequal inertia and the inertia product, cross-coupling error is caused by lateral accelerations, and error is caused by unequal stiffness; (2) unequal inertia and the inertia product were the most critical factors resulting in nonlinear error. Based on the results in the nonlinear error analysis, the suppression method for error focuses on unequal inertia and the inertia product. The proposed method of analysis and suppression was validated experimentally as the quadratic term coefficient was reduced by an order of magnitude from 1.9 × 10-6/g0 to 1.91 × 10-7/g0.

9.
Article in English | MEDLINE | ID: mdl-36748685

ABSTRACT

A Gram-straining-negative, facultatively anaerobic, motile by means of a polar flagellum and rod-shaped marine bacterium, designated S4M6T, was isolated from surface seawater collected in Dongshan Bay (Fujian, PR China). Phylogenetic analysis based on 16S rRNA genes, phylogenomic analysis of single-copy gene families and whole genome data indicated that S4M6T represented a member of the genus Vibrio. The closest phylogenetic relatives of S4M6T were Vibrio marisflavi CGMCC 1.8994T (97.8 % 16S rRNA gene sequence pairwise similarity), Vibrio variabilis LMG 25438T (96.9 %), Vibrio gangliei SZDIS-1T (96.2 %) and Vibrio aestivus M22T (96.1 %). The growth of S4M6T occurred at 15-35 °C (optimum 28 °C), pH 4.0-9.0 (optimum 5.0-7.0) and in the presence of 2-5 % (w/v) NaCl (optimum 3 %). The predominant fatty acids (>10 %) are C16 : 0, summed feature 3 (C16 : 1ω7c and/or C16 :  1ω6c) and summed feature 8 (C18 : 1ω7c and/or C18 :  1ω6c). The DNA G+C content of the assembled genomic sequences was 43.4 % for S4M6T. Average nucleotide identity (ANI) values between S4M6T and the reference species were lower than the threshold for species delineation (95-96 %); in silico DNA-DNA hybridization further indicated that S4M6T had less than 70 % similarity to its relatives. On the basis of the polyphasic evidence, strain S4M6T is proposed to represent a novel species of the genus Vibrio, for which the name Vibrio sinus sp. nov. is proposed. The type strain is S4M6T (= KCTC 92312T= MCCC 1K06167T).


Subject(s)
Fatty Acids , Vibrio , Fatty Acids/chemistry , Sequence Analysis, DNA , Phylogeny , RNA, Ribosomal, 16S/genetics , DNA, Bacterial/genetics , Base Composition , Bacterial Typing Techniques , Seawater/microbiology , China
10.
Sensors (Basel) ; 23(3)2023 Feb 01.
Article in English | MEDLINE | ID: mdl-36772606

ABSTRACT

Nonlinear error has become the most critical factor restricting the measurement accuracy of pendulous integrating gyroscopic accelerometers (PIGA) during their improvement. The key to nonlinear error suppression for PIGA is the precise measurement and compensation of the micro product of inertia (MPOI) of the float assembly. However, the existing equipment and procedure for product of inertia (POI) measurement and compensation do not meet the accuracy requirements for MPOI. To solve this problem, novel equipment and procedures are proposed for the measurement and compensation of MPOI. The principle of the proposed measurement method is to simulate the error produced by MPOI in PIGA by using a single-axis turntable to rotate the float assembly along the eccentric axis to generate a centrifugal moment due to MPOI. The principle of the proposed compensation method is to remove the asymmetric mass to reduce the MPOI to zero. Through experimental validation, it is concluded that: (1) the measurement and compensation accuracy of the proposed method are better than 1 × 10-10 kg·m2 and 3 × 10-10 kg·m2, respectively; (2) the proposed method is validated as the MPOI is reduced from 7.3 × 10-9 kg·m2 to 3 × 10-10 kg·m2 for a real float assembly in PIGA, and the quadratic error of PIGA is reduced from 10-5/g0 to 3 × 10-7/g0.

11.
PeerJ ; 10: e13634, 2022.
Article in English | MEDLINE | ID: mdl-35910778

ABSTRACT

More frequent global warming events, biological disasters, and anthropogenic activities have caused extensive damage to coral reefs around the world. Coral reefs in the Xisha Islands (also known as the Paracel Islands) have been damaged following rounds of heatwaves and crown-of-thorns starfish (CoTS) outbreaks over recent decades. Based on a comprehensive community survey in 2020, we determined a diagnosis for the present state of six coral regions in the Xisha Islands. The findings suggested that these regions had a total of 213 species of scleractinian corals belonging to 43 genera and 16 families. Living coral coverage across sites was widely divergent and ranged from 0.40% (IQR: 7.74-0.27%) in Panshi Yu to 38.20% (IQR: 43.00-35.90%) in Bei Jiao. Coral bleaching prevalence was 23.90% (IQR: 41.60-13.30%) overall and topped out at 49.30% (IQR: 50.60-48.10%) in Bei Jiao. Five of the coral regions (all but Yongxing Dao) were under threat of CoTS outbreaks. High mortality combined with excellent recruitment rates suggested potential rehabilitation after recent deterioration. We employed a quantifiable Deterioration Index (DI) to evaluate the intensity of deterioration of coral reefs in the Xisha Islands. The results showed that Yongxing Dao and Langhua Jiao had low recent deterioration (DIrecent = 0.05, IQR: 0.07-0.02 and 0.04, IQR: 0.11-0.01, respectively), while Bei Jiao, Yongle Atoll, Yuzhuo Jiao, and Panshi Yu had high recent deterioration (DIrecent > 0.16). Different monitoring sites within the same coral region were heterogeneous with regards to all above indexes. Moreover, we reviewed and discussed potential disturbances that threaten the health of the Xisha Islands' corals. It is crucial to identify severely afflicted areas and find successful methods to better manage coral reef health in this region.


Subject(s)
Anthozoa , Coral Reefs , Animals , Coral Bleaching , China/epidemiology , Disease Outbreaks , Starfish
12.
Article in English | MEDLINE | ID: mdl-35564530

ABSTRACT

Farmers are still the foundation of China's current "small, scattered, and weak" agricultural production pattern. As such, increasing guidance for reduction response behavior is central to reducing agricultural pesticide use. Following this pesticide reduction logic, four of the most widely promoted pesticide reduction technologies, including light trapping, biopesticide application, healthy crop growth, and insect-proof net technologies, were selected, and a theoretical analysis framework of farmers' willingness to adopt these technologies was constructed based on the theories of value perception and planned behavior. An ordered logistic regression model is used to explore key factors behind current pesticide reduction technology perceptions, technology response willingness, and behavioral decisions of farmers in China, with survey data from 516 farmers in Henan Province. The results show that among the four pesticide reduction technologies, healthy crop growth technology is the most-appealing one for farmers, followed by insect-proof net technology and biopesticide application technology. The least-appealing one for farmers is the light trapping technology. Farmers' perceived degree of income improvement from technology adoption is the main determinant of their willingness, which is positively significant at a 1% confidence level in all four models. In addition, farmers' willingness to respond to technologies is also significantly influenced by farmers' perception of technical operational ability, perception of risk from adopting technology, government-related subsidies, government technical training guidance, trust in government promotion of technology, and perception of the government's role in improving the external environment for adopting technology.


Subject(s)
Pesticides , Agriculture/methods , Biological Control Agents , China , Farmers , Humans , Motivation
13.
Article in English | MEDLINE | ID: mdl-35457650

ABSTRACT

The preference for land urbanization of local governments promotes urban sprawl, which leads to the dilemma of land finance dependence (LFD) of local governments and the negative constraints on the ecosystem of urban areas in China. However, how the urban growth boundary (UGB) policy corrects local governments' reliance on land finance has not been discussed in depth. In July 2014, the UGB policy began to be piloted in fourteen cities in China, providing a setting to further reveal the effectiveness of the UGB policy. By constructing an evolutionary game simulation model to clarify the behavioral strategies that local governments tend to adopt in the context of the UGB policy implementation, this study proves that the effective implementation of the UGB policy, by controlling the urban land capacity, can help solve local governments' LFD dilemma in China. The UGB policy consists of a set of technical means and policy tools that controls urban sprawl. It breaks the "unlimited land capacity" situation faced by local governments in China by limiting the urban land capacity within a given period of time, and has become a new solution to the dilemma of LFD. The implementation of the UGB policy highlighted the shortage of urban land, which has led to the increasing cost of land finance for local governments and constraints on local governments' LFD behavior. The shortage has also forced local governments to adjust and optimize their fiscal revenue structure. The UGB policy induced ongoing evolution in the benefit distribution among relevant entities in land finance, motivated local governments and other entities to adjust their primary strategies, and made it possible to address the dilemma of LFD in China.


Subject(s)
Ecosystem , Urbanization , China , Cities , Conservation of Natural Resources , Local Government , Policy
14.
Article in English | MEDLINE | ID: mdl-35328911

ABSTRACT

How to realize the sustainable use of land resources is extremely important for environmental protection and sustainable development in ecologically fragile regions. Nevertheless, the logic of achieving sustainable land use (SLU) in ecologically fragile regions and the corrective mechanisms for the implementation of land use efficiency systems are not fully revealed in theory. The Yellow River Basin is an important ecological barrier in China, and it holds an important position in China's economic and social development, as well as for ecological safety. However, the basin is also ecologically vulnerable. Therefore, investigating eight central cities in the Yellow River Basin of China and using municipal-level panel data from 2009 to 2018, this paper constructs a multidimensional index system and is dedicated to carrying out a comprehensive evaluation of SLU and the diagnosis of obstacle factors in ecologically fragile regions. The study found the following: (1) From 2009 to 2018, the SLU level in the central cities of the Yellow River Basin evolved from the "Unsustainable Level" to the "Initial Sustainable Level" and then to the "Basic Sustainable Level". The overall development trend was positive, and the level of SLU also rose. (2) From 2009 to 2018, there was significant geographical variation in spatial disparities in SLU in the central cities of the Yellow River Basin. In 2018, the average comprehensive score of SLU showed a pattern of downstream > upstream > midstream. (3) The obstacle factors of SLU in the Yellow River Basin of these cities in 2009 were concentrated on resource and environmental sustainability, while those in 2018 were concentrated on social acceptability. (4) In terms of the transfer process of land use types in these Yellow River Basin cities, the transfer from cultivated land to other types of land use played a major role, while construction land showed a significant expansion over the past ten years.


Subject(s)
Conservation of Natural Resources , Rivers , China , Cities , Urbanization
15.
Biodivers Data J ; 10: e91531, 2022.
Article in English | MEDLINE | ID: mdl-36761536

ABSTRACT

Montiporavietnamensis Veron, 2000 (Cnidaria, Anthozoa, Scleractinia, Acroporidae) is an uncommon, but distinctive species of stony coral. The complete mitochondrial genome of M.vietnamensis was sequenced in this study for the first time, based on 32 pairs of primers newly designed according to seven species in the family Acroporidae. The mitogenome of M.vietnamensis has a circular form and is 17,885 bp long, including 13 protein-coding genes (PCGs), 2 tRNA (tRNAMet, tRNATrp), 2 rRNA genes and a putative control-region. The base composition of the complete mitogenome was 24.8% A, 14.2% C, 24.2% G and 36.8% T, with a higher AT content (61.6%) than GC content (38.4%). Based on 13 protein-coding genes, a Maximum Likelihood phylogenetic analysis showed that M.vietnamensis is clustered in the genus Montipora which belongs to the family Acroporidae. More stony coral species should be sequenced for basic molecular information and to help confirm the taxonomic status and evolutionary relationships of Scleractinia in the future.

16.
Zookeys ; 1114: 21-34, 2022.
Article in English | MEDLINE | ID: mdl-36761708

ABSTRACT

In this study, the whole mitochondrial genomes of Physogyralichtensteini and Plerogyrasinuosa have been sequenced for the first time. The length of their assembled mitogenome sequences were 17,286 bp and 17,586 bp, respectively, both including 13 protein-coding genes, two tRNAs, and two rRNAs. Their mitogenomes offered no distinct structure and their gene order were the same as other typical scleractinians. Based on 13 protein-coding genes, a maximum likelihood phylogenetic analysis showed that Physogyralichtensteini and Plerogyrasinuosa are clustered in the family Plerogyridae, which belongs to the "Robust" clade. The 13 tandem mitogenome PCG sequences used in this research can provide important molecular information to clarify the evolutionary relationships amongst stony corals, especially at the family level. On the other hand, more advanced markers and more species need to be used in the future to confirm the evolutionary relationships of all the scleractinians.

17.
Saudi J Biol Sci ; 28(12): 7054-7060, 2021 Dec.
Article in English | MEDLINE | ID: mdl-34867006

ABSTRACT

Mitochondrial genome DNA is a powerful marker for resolving phylogenetic relationships among scleractinian corals. Here, we decode the complete mitochondrial genome of Diploastrea heliopora (Lamarck, 1816) for the first time. The general features are 18 363 bp in length, and conventionally, with 13 protein coding genes, two ribosomal RNAs, and two transfer RNAs. Gene arrangement and distribution are similar to other scleractinian corals. Moreover, the COI gene of D. heliopora is broken up into two parts by a complex group I intron. This intron is 1076 bases in length and contains helical structures (P1-P10, except P2) and four conserved regions (P, Q, R, and S). The mitochondrial genome of D. heliopora has asymmetric base composition (13.03% C, 20.29% G, 25.91% A, and 40.77% for T). Based on concatenated protein coding genes, ML and BI trees show similar phylogenetic relationship: D. heliopora clustered closely with Sclerophyllia maxima and Echinophyllia aspera into the robust branch. The data and conclusion in this study are reference for further phylogenetic studies of corals.

18.
Mitochondrial DNA B Resour ; 6(8): 2237-2239, 2021.
Article in English | MEDLINE | ID: mdl-34286087

ABSTRACT

In this study, the complete mitogenome sequence of the stony coral, Turbinaria bifrons Brüggemann, 1877, has been decoded for the first time by next-generation sequencing (NGS) and genome assembly. The assembled mitogenome was 18,880 bp in length, contained 13 protein coding genes, 2 transfer RNAs, and 2 ribosomal RNAs. The complete mitogenome of T. bifrons showing 97.09% identities to Tubastraea tagusensis. The complete mitogenome provides essential and important DNA molecular data for further phylogenetic and evolutionary analysis for coral phylogeny.

19.
Biodivers Data J ; 9: e62343, 2021.
Article in English | MEDLINE | ID: mdl-33867802

ABSTRACT

BACKGROUND: Endeis straughani Clark, 1970 was originally described from Queensland, Australia. Its range was extended to Ghana, West Africa when E. picta Bamber, 1979 was synonymised with E. straughani by Staples (1982). The current paper extends this range further, to include Port Louis, Mauritius. NEW INFORMATION: Five immature individuals gathered amongst hydroids during the 5th leg of the DY125-34 expedition were tentatively identified as E. straughani juveniles. Since these were collected from the fouling community on the ship's hull, they probably originated in Port Louis (Mauritius) when the ship was docked there.

20.
Biodivers Data J ; 9: e62395, 2021.
Article in English | MEDLINE | ID: mdl-33911915

ABSTRACT

Complete mitochondrial DNA sequence data have played a significant role in phylogenetic and evolutionary studies of scleractinian corals. In this study, the complete mitogenome of Psammocora profundacella Gardiner, 1898, collected from Guangdong Province, China, was sequenced by next-generation sequencing for the first time. Psammocora profundacella is the first species for which a mitogenome has been sequenced in the family Psammocoridae. The length of its assembled mitogenome sequence was 16,274 bp, including 13 protein-coding genes, two tRNAs and two rRNAs. Its gene content and gene order were consistent with the other Scleractinia species. All genes were encoded on the H strand and the GC content of the mitochondrial genome was 30.49%. Gene content and order were consistent with the other Scleractinia species. Based on 13 protein-coding genes, Maximum Likelihood phylogenetic analysis showed that P. profundacella belongs to the "Robust" clade. Mitochondrial genome data provide important molecular information for understanding the phylogeny of stony corals. More variable markers and additional species should be sequenced to confirm the evolutionary relationships of Scleractinia in the future.

SELECTION OF CITATIONS
SEARCH DETAIL
...