Microbes as Engines of Ecosystem Function: When Does Community Structure Enhance Predictions of Ecosystem Processes?

Microorganisms are vital in mediating the earth's biogeochemical cycles; yet, despite our rapidly increasing ability to explore complex environmental microbial communities, the relationship between microbial community structure and ecosystem processes remains poorly understood. Here, we address a fundamental and unanswered question in microbial ecology: 'When do we need to understand microbial community structure to accurately predict function?' We present a statistical analysis investigating the value of environmental data and microbial community structure independently and in combination for explaining rates of carbon and nitrogen cycling processes within 82 global datasets. Environmental variables were the strongest predictors of process rates but left 44% of variation unexplained on average, suggesting the potential for microbial data to increase model accuracy. Although only 29% of our datasets were significantly improved by adding information on microbial community structure, we observed improvement in models of processes mediated by narrow phylogenetic guilds via functional gene data, and conversely, improvement in models of facultative microbial processes via community diversity metrics. Our results also suggest that microbial diversity can strengthen predictions of respiration rates beyond microbial biomass parameters, as 53% of models were improved by incorporating both sets of predictors compared to 35% by microbial biomass alone. Our analysis represents the first comprehensive analysis of research examining links between microbial community structure and ecosystem function. Taken together, our results indicate that a greater understanding of microbial communities informed by ecological principles may enhance our ability to predict ecosystem process rates relative to assessments based on environmental variables and microbial physiology.

Aluminum sulfate (alum) application interactions with coupled metal and nutrient cycling in a hypereutrophic lake ecosystem.

Many lake ecosystems worldwide experience severe eutrophication and associated harmful blooms of cyanobacteria due to high loadings of phosphorus (P). While aluminum sulfate (alum) has been used for decades as chemical treatment of eutrophic waters, the ecological effects of alum on coupled metal and nutrient cycling are not well known. The objective of our study was to investigate the effects of an in-situ alum treatment on aluminum and nutrient (P, N, and S) cycling in a hypereutrophic lake ecosystem. Our results indicate that the addition of alum along with sodium aluminate (as a buffer) increased dissolved aluminum and sulfate in the surface and pore waters, and altered nitrogen cycling by increasing nitrous oxide (N2O) concentrations in the surface water. The increase of aluminum and sulfate may potentially feedback to alter benthic community dynamics. These results enhance our understanding of the unintended ecological consequences of alum treatments in hypereutrophic freshwater ecosystems.

Potential sources of methylmercury in tree foliage.

Litterfall is a major source of mercury (Hg) and toxic methylmercury (MeHg) to forest soils and influences exposures of wildlife in terrestrial and aquatic ecosystems. However, the origin of MeHg associated with tree foliage is largely unknown. We tested the hypothesis that leaf MeHg is influenced by root uptake and thereby related to MeHg levels in soils. Concentrations of MeHg and total Hg in deciduous and coniferous foliage were unrelated to those in soil at 30 urban and rural forested locations in southwest Ohio. In contrast, tree genera and trunk diameter were significant variables influencing Hg in leaves. The fraction of total Hg as MeHg averaged 0.4% and did not differ among tree genera. Given that uptake of atmospheric Hg(0) appears to be the dominant source of total Hg in foliage, we infer that MeHg is formed by in vivo transformation of Hg in proportion to the amount accumulated.

Stormwater sediment and bioturbation influences on hydraulic functioning, biogeochemical processes, and pollutant dynamics in laboratory infiltration systems.

Stormwater sediments that accumulate at the surface of infiltration basins reduce infiltration efficiencies by physical clogging and produce anoxification in the subsurface. The present study aimed to quantify the influence of stormwater sediment origin (urban vs industrial catchments) and the occurrence of bioturbators (tubificid worms) on the hydraulic functioning, aerobic/anaerobic processes, and pollutant dynamics in stormwater infiltration systems. In laboratory sediment columns, effects of stormwater sediments and tubificids were examined on hydraulic conductivity, microbial processes, and pollutant releases. Significant differences in physical (particle size distribution) and chemical characteristics betoveen the two stormwater sediments led to distinct effects of these sediments on hydraulic and biogeochemical processes. Bioturbation by tubificid worms could increase the hydraulic conductivity in stormwater infiltration columns, but this effect depended on the characteristics of the stormwater sediments. Bioturbation-driven increases in hydraulic conductivity stimulated aerobic microbial processes and enhanced vertical fluxes of pollutants in the sediment layer. Our results showed that control of hydraulic functioning by stormwater sediment characteristics and/ or biological activities (such as bioturbation) determined the dynamics of organic matter and pollutants in stormwater infiltration devices.

Ecosystem engineering at the sediment-water interface: bioturbation and consumer-substrate interaction.

In soft-bottom sediments, consumers may influence ecosystem function more via engineering that alters abiotic resources than through trophic influences. Understanding the influence of bioturbation on physical, chemical, and biological processes of the water-sediment interface requires investigating top-down (consumer) and bottom-up (resource) forces. The objective of the present study was to determine how consumer bioturbation mode and sediment properties interact to dictate the hydrologic function of experimental filtration systems clogged by the deposition of fine sediments. Three fine-grained sediments characterized by different organic matter (OM) and pollutant content were used to assess the influence of resource type: sediment of urban origin highly loaded with OM and pollutants, river sediments rich in OM, and river sediments poor in OM content. The effects of consumer bioturbation (chironomid larvae vs. tubificid worms) on sediment reworking, changes in hydraulic head and hydraulic conductivity, and water fluxes through the water-sediment interface were measured. Invertebrate influences in reducing the clogging process depended not only on the mode of bioturbation (construction of biogenic structures, burrowing and feeding activities, etc.) but also on the interaction between the bioturbation process and the sediments of the clogging layer. We present a conceptual model that highlights the importance of sediment influences on bioturbation and argues for the integration of bottom-up influence on consumer engineering activities.

Do tubificid worms influence organic matter processing and fate of pollutants in stormwater sediments deposited at the surface of infiltration systems?

The purpose of this study was to quantify the influences of tubificid worms on the biogeochemical functioning of an infiltration system impacted by a stormwater sediment deposit. Effects of worms with stormwater sediment deposit were compared with effects of worms with two other natural sediment deposits (one low and one rich-particulate organic matter deposits). We measured the effects of invertebrates on sediment reworking, organic matter processing, solute fluxes, microbial characteristics, and pollutant release from stormwater deposit to water. Our results showed that tubificid worms had slight effects on microbial activities in presence of the stormwater deposit whereas they significantly stimulated microbial activities in columns impacted by the other two deposits. High contents of labile organic matter contained in stormwater sediments probably led to very strong microbial activities that could not be easily stimulated by worm activities. In our experimental conditions, no significant influence of tubificid worms on the fate of pollutants (heavy metals and PAHs) contained in the stormwater deposit was measured. In conclusion, our study demonstrated that the organic matter characteristics of the stormwater sediments limited the efficiency of tubificid worms to stimulate organic matter mineralization in infiltration systems.

Influence of a stormwater sediment deposit on microbial and biogeochemical processes in infiltration porous media.

The purpose of this study was to test the relative influence of organic matter quantity and quality and the pollutant content of a stormwater sediment deposit on mineralization processes, microbial characteristics, and the release of solutes in infiltration sediment systems. In microcosm experiments, two other natural sediment deposits (one low and one rich particulate organic matter deposits) were studied to compare their effects with those of the stormwater deposit. The results showed that the biogeochemical processes (aerobic respiration, denitrification, fermentative processes), the microbial metabolism (enzymatic activities), and the releases of several solutes (NH(4)(+) and DOC) were stimulated in presence of the stormwater deposit and the natural particulate organic matter (POM)-rich deposit because of the quantity of the POM in these deposits. In the stormwater deposit, the high availability of the POM (indicated by its low C/N ratio and its high P content) produced a higher stimulation of the microbial metabolism than in presence of the POM-rich deposit (with a high C/N ratio). Pollutant (hydrocarbon and heavy metal) contents of the stormwater deposit did not have a significant effect on microbial processes. Thus, main effects of the stormwater sedimentary deposit on infiltration system were due to its organic matter characteristics (quantity and quality). Such organic matter characteristics need to be considered in future studies to determine the contamination potential of stormwater management practices.