Electron-beam-promoted fullerene dimerization in nanotubes: insights from DFT computations.

Fullerene dimerization inside a peapod is analyzed at DFT level by characterizing the stationary points and deriving the energy profile of the initial and reversible process named phase 1. We find that the barriers for the radical cation mechanism are significantly lower than those found for the neutral pathway. The peapod is mainly providing one-dimensional confinement for the reaction to take place in a more efficient way. Car-Parrinello metadynamics simulations provide hints on structures for the initial steps of the irreversible phase 2 where bond formation and breaking lead to important structural reorganizations within the coalescence process.

Molecular Dynamics Model to Explore the Initial Stages of Anion Exchange involving Layered Double Hydroxide Particles.

A classical molecular dynamics (MD) model of fully unconstrained layered double hydroxide (LDH) particles in aqueous NaCl solution was developed to explore the initial stages of the anion exchange process, a key feature of LDHs for their application in different fields. In particular, this study focuses on the active corrosion protection mechanism, where LDHs are able to entrap aggressive species from the solution while releasing fewer corrosive species or even corrosion inhibitors. With this purpose in mind, it was explored the release kinetics of the delivery of nitrate and 2-mercaptobenzothiazole (MBT, a typical corrosion inhibitor) from layered double hydroxide particles triggered by the presence of aggressive chloride anions in solution. It was shown that the delamination of the cationic layers occurs during the anion exchange process, which is especially evident in the case of MBT-.

First-Principles Calculations on the Adsorption Behavior of Amino Acids on a Titanium Carbide MXene.

Due to their vast range of promising biomedical and electronic applications, there is a growing interest in bioinorganic lamellar nanomaterials. MXenes are one such class of materials, which stand out by virtue of their demonstrated biocompatibility, pharmacological applicability, energy storage performance, and feasibility as single-molecule sensors. Here, we report on first-principles predictions, based on density functional theory, of the binding energies and ground-state configurations of six selected amino acids (AAs) adsorbed on O-terminated two-dimensional titanium carbide, Ti2CO2. We find that most AAs (aspartic acid, cysteine, glycine, and phenylalanine) prefer to adsorb via their nitrogen atom, which forms a weak bond with a surface Ti atom, with bond lengths of around 2.35 Å. In contrast, histidine and serine tend to adsorb parallel to the MXene surface, with their α carbon about 3 Å away from it. In both adsorption configurations, the adsorption energies are on the order of the tenths of an electronvolt. In addition, we find a positive, nearly linear correlation between the binding energy of each studied AA and its van der Waals volume, which suggests an adsorption dominated by van der Waals forces. This relationship allowed us to predict the adsorption energies for all of the proteinogenic AAs on the same Ti2CO2 MXene. Our analysis additionally shows that in the parallel adsorption mode there is a negligible transfer of charge density from the AA to the surface but noticeable in the N-bonded adsorption mode. In the latter, the isosurfaces of charge density differences show accumulation of shared electrons in the region between N and Ti, confirming the predicted N-Ti bond. The moderate adsorption energy values calculated, as well as the preservation of the integrity of both the AAs and the surface upon adsorption, reinforce the capability of Ti2CO2 as a promising reusable biosensor for amino acids.

Diels-Alder attachment of a planar organic molecule to a dangling bond dimer on a hydrogenated semiconductor surface.

Construction of single-molecule electronic devices requires the controlled manipulation of organic molecules and their properties. This could be achieved by tuning the interaction between the molecule and individual atoms by local "on-surface" chemistry, i.e., the controlled formation of chemical bonds between the species. We demonstrate here the reversible attachment of a planar conjugated polyaromatic molecule to a pair of unpassivated dangling bonds on a hydrogenated Ge(001):H surface via a Diels-Alder [4+2] addition using the tip of a scanning tunneling microscope (STM). Due to the small stability difference between the covalently bonded and a nearly undistorted structure attached to the dangling bond dimer by long-range dispersive forces, we show that at cryogenic temperatures the molecule can be switched between both configurations. The reversibility of this covalent bond forming reaction may be applied in the construction of complex circuits containing organic molecules with tunable properties.

Theoretical description of the role of halides, silver, and surfactants on the structure of gold nanorods.

Density functional theory simulations including dispersion provide an atomistic description of the role of different compounds in the synthesis of gold-nanorods. Anisotropy is caused by the formation of a complex between the surfactant, bromine, and silver that preferentially adsorbs on some facets of the seeds, blocking them from further growth. In turn, the nanorod structure is driven by the perferential adsorption of the surfactant, which induces the appearance of open {520} lateral facets.

On the properties of binary rutile MO2 compounds, M = Ir, Ru, Sn, and Ti: a DFT study.

We have studied the properties of bulk and different surfaces of rutile oxides, IrO2, RuO2, SnO2, and TiO2, and their binary compounds by means of density functional theory. As mixtures are employed in many applications, we have investigated the solubility, segregation, and overlayer formation of one of these oxides on a second metal from the series, as these aspects are critical for the chemical and electrochemical performances. Our results show that the bulk solubility is possible for several combinations. The electronic structure analysis indicates the activation of Ir states in Ir(x)Ti(1-x)O2 mixtures when compared to the parent IrO2 compound or the reduction in the band gap of TiO2 when Sn impurities are present. Segregation and oxygen-induced segregation of the second metal for the most common surfaces show a great extent of possibilities ranging from strong segregation to antisegregation, which depends on the oxygen ambient. The interaction of guest rutile overlayers on hosts is favourable and a wide range of growth properties (from multilayer formation to tridimensional particles) can be observed. Finally, a careful comparison with experimental information is presented, and for those cases where no data is available, the computed database can be used as a guideline by experimentalists.

In situ surface coverage analysis of RuO2-catalysed HCl oxidation reveals the entropic origin of compensation in heterogeneous catalysis.

In heterogeneous catalysis, rates with Arrhenius-like temperature dependence are ubiquitous. Compensation phenomena, which arise from the linear correlation between the apparent activation energy and the logarithm of the apparent pre-exponential factor, are also common. Here, we study the origin of compensation and find a similar dependence on the rate-limiting surface coverage term for each Arrhenius parameter. This result is derived from an experimental determination of the surface coverage of oxygen and chlorine species using temporal analysis of products and prompt gamma activation analysis during HCl oxidation to Cl(2) on a RuO(2) catalyst. It is also substantiated by theory. We find that compensation phenomena appear when the effect on the apparent activation energy caused by changes in surface coverage is balanced out by the entropic configuration contributions of the surface. This result sets a new paradigm in understanding the interplay of compensation effects with the kinetics of heterogeneously catalysed processes.

Rules for selectivity in oxidation processes on RuO2(110).

Selectivity is a must for new high performance catalysts which are required to fit strict environmental regulations. RuO(2) has been proposed as a mild oxidant capable of performing selective oxidations of alcohols to aldehydes and ketones. However, it fails in another appealing partial oxidation, that of ethylene to its epoxide, where complete oxidation occurs. In contrast, both reactions are selective on Ag, a catalyst that shows similar binding energies for the active oxidation species, oxygen. By means of density functional theory applied to slabs we have been able to unravel the origin of the, in principle erratic, selectivity of RuO(2) in partial oxidations. The behavior can be understood as being due to a combination of the basicity of O atoms, the relative binding energies of reactants and products to the surface (thermodynamic factor), and the structure sensitivity of some steps in the oxidation process due to difficult O mobility on RuO(2).