Phylogenomics and taxon-rich phylogenies of new and historical specimens shed light on the systematics of Hypnea (Cystocloniaceae, Rhodophyta).

Cystocloniacae is a highly diverse family of Rhodophyta, including species of ecological and economic importance, whose phylogeny remains largely unresolved. Species delimitation is unclear, particularly in the most speciose genus, Hypnea, and cryptic diversity has been revealed by recent molecular assessments, especially in the tropics. Here, we carried out the first phylogenomic investigation of Cystocloniaceae, focused on the genus Hypnea, inferred from chloroplast and mitochondrial genomes including taxa sampled from new and historical collections. In this work, molecular synapomorphies (gene losses, InDels and gene inversions) were identified to better characterize clades in our congruent organellar phylogenies. We also present taxon-rich phylogenies based on plastid and mitochondrial markers. Molecular and morphological comparisons of historic collections with contemporary specimens revealed the need for taxonomic updates in Hypnea, the synonymization of H. marchantiae to a later heterotypic synonym of H. cervicornis and the description of three new species: H. davisiana sp. nov., H. djamilae sp. nov. and H. evaristoae sp. nov.

Phylogenomics, divergence time estimation and trait evolution provide a new look into the Gracilariales (Rhodophyta).

The Gracilariales is a highly diverse, widely distributed order of red algae (Rhodophyta) that forms a well-supported clade. Aside from their ecological importance, species of Gracilariales provide important sources of agarans and possess bioactive compounds with medicinal and pharmaceutical use. Recent phylogenetic analyses from a small number of genes have greatly advanced our knowledge of evolutionary relationships in this clade, yet several key nodes were not especially well resolved. We assembled a phylogenomic data set containing 79 nuclear genes, 195 plastid genes, and 24 mitochondrial genes from species representing all three major Gracilariales lineages, including: Melanthalia, Gracilariopsis, and Gracilaria sensu lato. This data set leads to a fully-resolved phylogeny of Gracilariales, which is highly-consistent across genomic compartments. In agreement with previous findings, Melanthalia obtusata was sister to a clade including Gracilaria s.l. and Gracilariopsis, which were each resolved as well-supported clades. Our results also clarified the long-standing uncertainty about relationships in Gracilaria s.l., not resolved in single and multi-genes approaches. We further characterized the divergence time, organellar genome architecture, and morphological trait evolution in Gracilarales to better facilitate its taxonomic treatment. Gracilariopsis and Gracilaria s.l. are comparable taxonomic ranks, based on the overlapping time range of their divergence. The genomic structure of plastid and mitochondria is highly conserved within each clade but differs slightly among these clades in gene contents. For example, the plastid gene petP is lost in Gracilaria s.l. and the mitochondrial gene trnH is in different positions in the genome of Gracilariopsis and Gracilaria s.l. Our analyses of ancestral character evolution provide evidence that the main characters used to delimitate genera in Gracilariales, such as spermatangia type and features of the cystocarp's anatomy, overlap in subclades of Gracilaria s.l. We discuss the taxonomy of Gracilariales in light of these results and propose an objective and practical classification, which is in agreement with the criteria of monophyly, exclusive characters, predictability and nomenclatural stability.

Taxonomic revision of the Peyssonneliales (Rhodophyta): Circumscribing the authentic Peyssonnelia clade and proposing four new genera and seven new species.

The Peyssonneliaceae represents the only family in the order Peyssonneliales, a clade of red encrusting algae distributed worldwide, including 136 species in eleven currently accepted genera. Delineation of genera in the Peyssonneliaceae has mostly been based on vegetative characteristics. Previous molecular phylogenies have shown that some traditionally circumscribed genera are not monophyletic and relationships among them are uncertain. We contribute to the knowledge of the evolutionary history of this clade, presenting a robust rbcL phylogeny that provides new insights on the origin and diversification of the Peyssonneliales. Based on a broad dataset and morphological analyses, we propose a revised taxonomic scheme for the Peyssonneliales resolved as monophyletic with well-supported main lineages. Our results show that Peyssonnelia is polyphyletic, and, therefore, we propose three new genera, Agissea, Olokunia, and Rhodowynnea to accommodate species currently assigned to Peyssonnelia, but distantly related to the clade with the type species of the genus. Additionally, barcoding techniques and analyzed criteria for specific delimitation supported the establishment of one new genus, Brasilophycus, and seven new species, from northeastern Brazil: Agissea amadoi, A. densissima, A. taberniforma, A. villatlantica, A. yemonjasagbae, Brasilophycus similis, and B. roseomarginatus. Our integrative taxonomic approach reveals underestimated diversity of Brazilian Peyssonneliales. Investment in broader sampling along the Brazilian coast and other tropical areas may reveal that its marine biodiversity can be expanded, enlightening our knowledge about this ecologically important group of red algae.

Reef-building coralline algae from the Southwest Atlantic: filling gaps with the recognition of Harveylithon (Corallinaceae, Rhodophyta) on the Brazilian coast.

The Southwest Atlantic is notable for having extensive reef areas cemented by nongeniculate coralline red algae. Based on an analysis of four genetic markers and morpho-anatomical features, we clarify the species of Harveylithon in the tropical and warm temperate Southwest Atlantic. Species delimitation methods (mBGD, ABGD, SPN, and PTP), using three markers (psbA, rbcL, and COI), support the recognition of three new species: H. catarinense sp. nov., H. maris-bahiensis sp. nov., and H. riosmenum sp. nov., previously incorrectly called Hydrolithon samoënse. Our findings highlight the importance of using an approach with several lines of evidence to solve the taxonomic status of the cryptic species.

UVR and PAR absorbing compounds of marine brown macroalgae along a latitudinal gradient of the Brazilian coast.

Absorption spectra are indicative of biological sample chemical composition and can be used as a basis for the construction of descriptive and predictive models for biotechnological screening or assays. In marine algae, chemical composition can vary due to species-specific differences in biochemistry, as well as intra-specific responses to unique environmental variables. Different indices (UVCi, UVB+Ai and PARi) were proposed and calculated to evaluate how photoprotective compounds vary in 18 species of Phaeophyceae. In addition, they were correlated to abiotic factors. Through this technique, seven main peaks were detected in the absorbing spectra of marine brown algal extracts. The highest photoprotective indices values were found in species collected in tropical areas, where higher solar radiation is observed compared to the southern Brazilian coast. Considering additional abiotic factors, water temperature and nitrate concentration were negatively correlated with UV indices. PARi's indices were positively affected by nitrate. All species collected on the Brazilian coast have absorption peaks in the region of phenolic compounds and carotenoids, suggesting that tropical marine brown macroalgae may have developed an effective antioxidant defense system, suggesting adaptation to environments characterized by high solar radiation. UVR/PAR indices congregated essential information to possible future biotechnological screening, facilitating selection of high priority species or sites, fostering actions to enhance alternative sustainable management strategies of coastal environments.

Delimitating cryptic species in the Gracilaria domingensis complex (Gracilariaceae, Rhodophyta) using molecular and morphological data.

Species in the genus Gracilaria that display conspicuously flattened vegetative morphologies are a taxonomically challenging group of marine benthic red algae. This is a result of their species richness, morphological similarity, and broad phenotypic plasticity. Within this group, the Gracilaria domingensis complex is one of the most common, conspicuous, and morphologically variable species along the tropical western Atlantic Ocean. Previous research has identified that members of this complex belong to two distantly related clades. However, despite this increased phylogentic resolution, species delimitations within each of these clades remain unclear. Our study assessed the species diversity within this difficult complex using morphological and molecular data from three genetic markers (cox1, UPA, and rbcL). We additionally applied six single-marker species delimitation methods (SDM: ABGD, GMYCs, GMYCm, SPN, bPTP, and PTP) to rbcL, which were largely in agreement regarding species delimitation. These results, combined with our analysis of morphology, indicate that the G. domingensis complex includes seven distinct species, each of which are not all most closely related: G. cervicornis; a ressurected G. ferox; G. apiculata subsp. apiculata; a new species, Gracilaria baiana sp. nov.; G. intermedia subsp. intermedia; G. venezuelensis; and G. domingensis sensu stricto, which includes the later heterotypic synonym, G. yoneshigueana. Our study demonstrates the value of multipronged strategies, including the use of both molecular and morphological approaches, to decipher cryptic species of red algae.

Species-delimitation and phylogenetic analyses of some cosmopolitan species of Hypnea (Rhodophyta) reveal synonyms and misapplied names to H. cervicornis, including a new species from Brazil.

Hypnea has an intricate nomenclatural history due to a wide pantropical distribution and considerable morphological variation. Recent molecular studies have provided further clarification on the systematics of the genus; however, species of uncertain affinities remain due to flawed taxonomic identification. Detailed analyses coupled with literature review indicated a strong relationship among H. aspera, H. cervicornis, H. flexicaulis, and H. tenuis, suggesting a need for further taxonomic studies. Here, we analyzed sequences from two molecular markers (COI-5P and rbcL) and performed several DNA-based delimitation methods (mBGD, ABGD, SPN, PTP and GMYC). These molecular approaches were contrasted with morphological and phylogenetic evidence from type specimens and/or topotype collections of related species under a conservative approach. Our results demonstrate that H. aspera and H. flexicaulis represent heterotypic synonyms of H. cervicornis and indicate the existence of a misidentified Hypnea species, widely distributed on the Brazilian coast, described here as a new species: H. brasiliensis. Finally, inconsistencies observed among our results based on six different species delimitation methods evidence the need for adequate sampling and marker choice for different methods.

Novas referências de rodofíceas marinhas bentônicas para o litoral brasileiro / New references of rhodophytes from the brazilian coast

Sete táxons de rodofíceas marinhas bentônicas são referidos pela primeira vez para o litoral brasileiro: Acrochaetium corymbiferum (Thur. in Le Jolis) Batters, A. liagorae B›rgesen, Aglaothamnion herveyi (M. Howe) Aponte, D.L. Ballant. & J.N. Norris, Crouanophycus latiaxis (L.A. Abbott) Athanas., Grallatoria reptans M. Howe e Gelidiella sanctarum Feldmann & Hamel. Gelidiopsis repens (Kütz.) Weber Bosse é pela primeira vez referido para o Oceano Atlântico. As coletas foram realizadas no medio e infralitoral. O material está depositado no Herbário Alexandre Leal Costa. Referência da descrição original, basiônimo, descrição morfológica, distribuição geográfica e comentários taxonômicos são apresentados para cada táxon estudado.

Seven taxa of benthic marine rodophytes are reported for the first time from the Brazil littoral: Acrochaetium corymbiferum (Thur. in Le Jolis) Batters, A. liagorae B›rgesen, Aglaothamnion herveyi (M. Howe) Aponte, D.L. Ballant. & J.N. Norris, Crouanophycus latiaxis (L.A. Abbott) Athanas., Grallatoria reptans M. Howe and Gelidiella sanctarum Feldmann & Hamel. Gelidiopsis repens (Kütz.) Weber Bosse this is the new reference to the Atlantic Ocean. The material collected on mediolittoral and infralittoral was deposited in the Herbarium Alexandre Leal Costa (ALCB) at the Universidade Federal da Bahia. Reference to the original description, basionym, morphological description, geographical distribution and taxonomical comments are presented for each taxon studied.