ABSTRACT
To assess the molecular epidemiology of HIV-1 in Republic of Congo (Congo), we investigated 29 HIV-1s obtained from 82 Congolese AIDS and ARC patients in 1996 and 1997. Part of the env region including the V3 loop was phylogenetically analyzed. The genotypes observed were varied: of 29 specimens, 12 (41 %) were subtype A, 1 (3%) was subtype D, 6 (21%) were subtype G, 6 (21%) were subtype H, 2 (7%) were subtype J, and 2 (7%) could not be classified as any known subtypes (U, unclassified). The heterogeneous profile of HIV-1 infection was different from the profiles of neighboring Central African countries. These data show that subtypes G and H as well as subtype A were circulating with high prevalence. The fact that new genetic subtypes (J and U) are circulating indicates a need for a greater surveillance for these subtypes both in Congo as well as in other parts of the world.
Subject(s)
AIDS-Related Complex/virology , Acquired Immunodeficiency Syndrome/virology , HIV-1/classification , HIV-1/genetics , AIDS-Related Complex/epidemiology , Acquired Immunodeficiency Syndrome/epidemiology , Adult , Amino Acid Sequence , Congo/epidemiology , Female , HIV Envelope Protein gp120/genetics , Humans , Male , Molecular Epidemiology , Molecular Sequence Data , Peptide Fragments/genetics , Phylogeny , Polymerase Chain Reaction , Sequence Analysis, DNAABSTRACT
To determine newly identified lentiviruses, termed simian immunodeficiency virus (SIV)cpz97CG4 and SIVcpz97CG6, from two wild-captured juvenile brother chimpanzees in the Republic of Congo, subgenomic pol (integrase, 288 bp), 5'tat/rev-env Cl (including vpu, 354 bp) and env (C2-C4, 544 bp) gene fragments were amplified and sequenced. The analysis revealed significantly discordant phylogenetic positions of SIVcpz97CG in each genomic region. In the trees derived from partial env sequences (V3), both SIVcpz strains clustered in human immunodeficiency virus type 1 (HIV-1) subtype A. However, in the trees derived from partial pol (integrase) and 5'tat/rev-env C1 (including vpu) sequences, they clustered independently from any of the known HIV-1 subtypes. Especially, in the 5'tat/rev-vpu tree, they branched before the root of HIV-1 group M. These findings suggest that these Congolese SIVcpz genomes are mosaic, probably due to a recombinational event in the recent past, and it provides evidence for a rather recently occurring cross-species transmission between humans and chimpanzees.
Subject(s)
Lentivirus/genetics , Pan troglodytes/immunology , Sequence Analysis , Simian Immunodeficiency Virus/genetics , Zoonoses , Amino Acid Sequence , Animals , Cloning, Molecular , Congo , Humans , Lentivirus/immunology , Lentivirus Infections/transmission , Male , Molecular Sequence Data , Phylogeny , Polymerase Chain Reaction , Simian Acquired Immunodeficiency Syndrome/transmission , Simian Immunodeficiency Virus/immunologyABSTRACT
The card agglutination test for trypanosomiasis (CATT) was evaluated and compared to the classical immunofluorescent antibody test (IFAT) in the immunological diagnosis of Gambian trypanosomiasis. Tests were performed on serum and whole blood. Cross-reactions were found in the CATT with sera from patients suffering from parasitic infections other than sleeping sickness, but could be largely overcome by selecting 1/10 as the specific threshold dilution. At 1/40 dilution no false positive result was observed in the IFAT. At the specific threshold dilution, the sensitivity of IFAT was 94.7%, compared with 91.6% for the CATT. On whole blood, a more convenient sample in the field, IFAT specificity (100%) was greater than that of the CATT (94.3%), as was its sensitivity (92% compared with 82.5%). In view of its simplicity and rapidity of execution, the CATT is an efficient serological test to detect new foci. When greater sensitivity is required, IFAT should be preferred to CATT.
