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1.
Genes (Basel) ; 11(11)2020 11 19.
Article in English | MEDLINE | ID: mdl-33228033

ABSTRACT

Genetic variants that are associated with susceptibility to type 2 diabetes (T2D) are important for identification of individuals at risk and can provide insights into the molecular basis of disease. Analysis of T2D in domestic animals provides both the opportunity to improve veterinary management and breeding programs as well as to identify novel T2D risk genes. Australian-bred Burmese (ABB) cats have a 4-fold increased incidence of type 2 diabetes (T2D) compared to Burmese cats bred in the United States. This is likely attributable to a genetic founder effect. We investigated this by performing a genome-wide association scan on ABB cats. Four SNPs were associated with the ABB T2D phenotype with p values <0.005. All exons and splice junctions of candidate genes near significant single-nucleotide polymorphisms (SNPs) were sequenced, including the genes DGKG, IFG2BP2, SLC8A1, E2F6, ETV5, TRA2B and LIPH. Six candidate polymorphisms were followed up in a larger cohort of ABB cats with or without T2D and also in Burmese cats bred in America, which exhibit low T2D incidence. The original SNPs were confirmed in this cohort as associated with the T2D phenotype, although no novel coding SNPs in any of the seven candidate genes showed association with T2D. The identification of genetic markers associated with T2D susceptibility in ABB cats will enable preventative health strategies and guide breeding programs to reduce the prevalence of T2D in these cats.


Subject(s)
Cat Diseases/genetics , Diabetes Mellitus, Type 2/veterinary , Polymorphism, Single Nucleotide , Animals , Australia , Case-Control Studies , Cats , Diabetes Mellitus, Type 2/genetics , Female , Genetic Markers , Genetic Predisposition to Disease , Genome-Wide Association Study , Male , United States
2.
J Hered ; 102 Suppl 1: S74-80, 2011.
Article in English | MEDLINE | ID: mdl-21846750

ABSTRACT

Immunoglobulin E (IgE)-mediated hypersensitivity against environmental allergens, commonly including Dermatophagoides farinae, is associated with atopic diseases in both humans and dogs. We have recently identified a family of clinically healthy West Highland white terriers (WHWTs) with high-serum D. farinae-IgE levels. In this study, we investigated the genetic mechanism controlling IgE responsiveness in dogs by performing a genome-wide association study (GWAS) using the Affymetrix V2 Dog SNP array in 31 high-IgE and 24 low-IgE responder WHWTs. A gene-dropping simulation method, using SIB-PAIR software, showed significant allelic association between serum D. farinae-specific IgE levels and a 2.3-Mb area on CFA35 (best empirical P = 1 × 10(-5)). A nearby candidate gene, CD83, encodes a protein which has important immunological functions in antigen presentation and regulation of humoral immune responses. We sequenced this gene in 2 high-IgE responders and 2 low-IgE responders and identified an intronic polymorphic repeat sequence with a predicted functional effect, but the association was insufficient to explain the GWAS association signal in this population (P = 1 × 10(-3)). Further studies are necessary to investigate the significance of these findings for IgE responsiveness and atopic disease in the dog.


Subject(s)
Dermatophagoides farinae/immunology , Dog Diseases/immunology , Dog Diseases/parasitology , Genetic Loci/genetics , Hypersensitivity, Immediate/veterinary , Mite Infestations/veterinary , Animals , Antigens, CD/genetics , Computational Biology , DNA Primers/genetics , Dogs , Enzyme-Linked Immunosorbent Assay , Genome-Wide Association Study , Hypersensitivity, Immediate/parasitology , Immunoglobulin E/blood , Immunoglobulins/genetics , Linear Models , Membrane Glycoproteins/genetics , Mite Infestations/immunology , Polymorphism, Single Nucleotide/genetics , Sequence Analysis, DNA , CD83 Antigen
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