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1.
AACN Adv Crit Care ; 35(1): 32-42, 2024 Mar 15.
Article in English | MEDLINE | ID: mdl-38457623

ABSTRACT

Nursing has been perceived as an apolitical profession. Although some advancements in legislation and political engagement for nursing have occurred, the perception remains; it is considered to be a relatively silent profession in the political and policy arenas. Authors, when trying to describe this phenomenon, have raised questions about whether the nursing profession is political. In addition, the motivation for participation and advocacy, as well as the barriers to these activities, have limited investigation, making it difficult to understand the real reasons behind nursing's political and policy immobility. The purpose of this article is to familiarize readers with politics, policy, and advocacy; levels of state and federal government; and the lawmaking process in different states. The goal is to offer information and identify factors that increase confidence and efficacy when engaging with the political system.


Subject(s)
Health Policy , Politics , Humans , Delivery of Health Care , Motivation
2.
Nature ; 545(7652): 54-59, 2017 05 04.
Article in English | MEDLINE | ID: mdl-28445465

ABSTRACT

The development of the nervous system involves a coordinated succession of events including the migration of GABAergic (γ-aminobutyric-acid-releasing) neurons from ventral to dorsal forebrain and their integration into cortical circuits. However, these interregional interactions have not yet been modelled with human cells. Here we generate three-dimensional spheroids from human pluripotent stem cells that resemble either the dorsal or ventral forebrain and contain cortical glutamatergic or GABAergic neurons. These subdomain-specific forebrain spheroids can be assembled in vitro to recapitulate the saltatory migration of interneurons observed in the fetal forebrain. Using this system, we find that in Timothy syndrome-a neurodevelopmental disorder that is caused by mutations in the CaV1.2 calcium channel-interneurons display abnormal migratory saltations. We also show that after migration, interneurons functionally integrate with glutamatergic neurons to form a microphysiological system. We anticipate that this approach will be useful for studying neural development and disease, and for deriving spheroids that resemble other brain regions to assemble circuits in vitro.


Subject(s)
Neurons/cytology , Prosencephalon/cytology , Prosencephalon/growth & development , Spheroids, Cellular/cytology , Autistic Disorder/genetics , Autistic Disorder/pathology , Cell Line , Cell Movement , Cells, Cultured , Female , GABAergic Neurons/cytology , Glutamic Acid/metabolism , Humans , Interneurons/cytology , Interneurons/pathology , Long QT Syndrome/genetics , Long QT Syndrome/pathology , Male , Models, Biological , Neurogenesis , Neurons/pathology , Pluripotent Stem Cells/cytology , Prosencephalon/anatomy & histology , Synapses/physiology , Syndactyly/genetics , Syndactyly/pathology
3.
Policy Polit Nurs Pract ; 18(3): 135-148, 2017 Aug.
Article in English | MEDLINE | ID: mdl-29292658

ABSTRACT

Twenty-eight states have laws and regulations limiting the ability of nurse practitioners (NPs) to practice to the full extent of their education and training, thereby preventing patients from fully accessing NP services. Revisions to state laws and regulations require NPs to engage in the political process. Understanding the political engagement of NPs may facilitate the efforts of nurse leaders and nursing organizations to promote change in state rules and regulations. The purpose of this study was to describe the political efficacy and political participation of U.S. NPs and gain insight into factors associated with political interest and engagement. In the fall of 2015, we mailed a survey to 2,020 NPs randomly chosen from the American Academy of Nurse Practitioners' database and 632 responded (31% response rate). Participants completed the Trust in Government (external political efficacy) and the Political Efficacy (internal political efficacy) scales, and a demographic form. Overall, NPs have low political efficacy. Older age ( p≤.001), health policy mentoring ( p≤.001), and specific education on health policy ( p≤.001) were all positively associated with internal political efficacy and political participation. External political efficacy was not significantly associated with any of the study variables. Political activities of NPs are largely limited to voting and contacting legislators. Identifying factors that engage NPs in grassroots political activities and the broader political arena is warranted, particularly with current initiatives to make changes to state laws and regulations that limit their practice.


Subject(s)
Nurse Practitioners/statistics & numerical data , Politics , Professional Autonomy , Social Participation , Adult , Female , Humans , Male , Middle Aged , Nurse's Role , Surveys and Questionnaires , United States
4.
J Bone Joint Surg Am ; 98(11): e46, 2016 Jun 01.
Article in English | MEDLINE | ID: mdl-27252443

ABSTRACT

Growth estimates and demographic shifts of the population of the United States foreshadow a future heightened demand for musculoskeletal care. Although many articles have discussed this growing demand on the musculoskeletal workforce, few address the inevitable need for more musculoskeletal care providers. As we are unable to increase the number of orthopaedic surgeons because of restrictions on graduate medical education slots, physician assistants (PAs) and nurse practitioners (NPs) represent one potential solution to the impending musculoskeletal care supply shortage. This American Orthopaedic Association (AOA) symposium report investigates models for advanced practice provider integration, considers key issues affecting PAs and NPs, and proposes guidelines to help to assess the logistical and educational possibilities of further incorporating NPs and PAs into the orthopaedic workforce in order to address future musculoskeletal care needs.


Subject(s)
Health Workforce , Nurse Practitioners , Orthopedics , Physician Assistants , Humans , United States
5.
Brain ; 139(Pt 2): 468-80, 2016 Feb.
Article in English | MEDLINE | ID: mdl-26685158

ABSTRACT

Ischaemic stroke is the leading cause of severe long-term disability yet lacks drug therapies that promote the repair phase of recovery. This repair phase of stroke occurs days to months after stroke onset and involves brain remapping and plasticity within the peri-infarct zone. Elucidating mechanisms that promote this plasticity is critical for the development of new therapeutics with a broad treatment window. Inhibiting tonic (extrasynaptic) GABA signalling during the repair phase was reported to enhance functional recovery in mice suggesting that GABA plays an important function in modulating brain repair. While tonic GABA appears to suppress brain repair after stroke, less is known about the role of phasic (synaptic) GABA during the repair phase. We observed an increase in postsynaptic phasic GABA signalling in mice within the peri-infarct cortex specific to layer 5; we found increased numbers of α1 receptor subunit-containing GABAergic synapses detected using array tomography, and an associated increased efficacy of spontaneous and miniature inhibitory postsynaptic currents in pyramidal neurons. Furthermore, we demonstrate that enhancing phasic GABA signalling using zolpidem, a Food and Drug Administration (FDA)-approved GABA-positive allosteric modulator, during the repair phase improved behavioural recovery. These data identify potentiation of phasic GABA signalling as a novel therapeutic strategy, indicate zolpidem's potential to improve recovery, and underscore the necessity to distinguish the role of tonic and phasic GABA signalling in stroke recovery.


Subject(s)
Drug Delivery Systems , GABA-A Receptor Agonists/administration & dosage , Neural Inhibition/physiology , Pyridines/administration & dosage , Receptors, GABA-A/physiology , Stroke/drug therapy , Animals , Drug Delivery Systems/trends , Male , Mice , Mice, Inbred C57BL , Neocortex/drug effects , Neocortex/physiology , Neural Inhibition/drug effects , Organ Culture Techniques , Recovery of Function/drug effects , Recovery of Function/physiology , Stroke/pathology , Stroke/physiopathology , Zolpidem
6.
Nat Methods ; 12(7): 671-8, 2015 Jul.
Article in English | MEDLINE | ID: mdl-26005811

ABSTRACT

The human cerebral cortex develops through an elaborate succession of cellular events that, when disrupted, can lead to neuropsychiatric disease. The ability to reprogram somatic cells into pluripotent cells that can be differentiated in vitro provides a unique opportunity to study normal and abnormal corticogenesis. Here, we present a simple and reproducible 3D culture approach for generating a laminated cerebral cortex-like structure, named human cortical spheroids (hCSs), from pluripotent stem cells. hCSs contain neurons from both deep and superficial cortical layers and map transcriptionally to in vivo fetal development. These neurons are electrophysiologically mature, display spontaneous activity, are surrounded by nonreactive astrocytes and form functional synapses. Experiments in acute hCS slices demonstrate that cortical neurons participate in network activity and produce complex synaptic events. These 3D cultures should allow a detailed interrogation of human cortical development, function and disease, and may prove a versatile platform for generating other neuronal and glial subtypes in vitro.


Subject(s)
Astrocytes/physiology , Cerebral Cortex/physiology , Pluripotent Stem Cells/cytology , Astrocytes/cytology , Cells, Cultured , Cerebral Cortex/cytology , Humans , Spheroids, Cellular , Synapses/physiology
7.
Chest ; 143(3): 847-850, 2013 Mar.
Article in English | MEDLINE | ID: mdl-23460162

ABSTRACT

Because there is increasing demand for critical care providers in the United States, many medical ICUs for adults have begun to integrate nurse practitioners and physician assistants into their medical teams. Studies suggest that such advanced practice providers (APPs), when appropriately trained in acute care, can be highly effective in helping to deliver high-quality medical critical care and can be important elements of teams with multiple providers, including those with medical house staff. One aspect of building an integrated team is a practice model that features appropriate coding and billing of services by all providers. Therefore, it is important to understand an APP's scope of practice, when they are qualified for reimbursement, and how they may appropriately coordinate coding and billing with other team providers. In particular, understanding when and how to appropriately code for critical care services (Current Procedural Terminology [CPT] code 99291, critical care, evaluation and management of the critically ill or critically injured patient, first 30-74 min; CPT code 99292, critical care, each additional 30 min) and procedures is vital for creating a sustainable program. Because APPs will likely play a growing role in medical critical care units in the future, more studies are needed to compare different practice models and to determine the best way to deploy this talent in specific ICU settings.


Subject(s)
Aortic Aneurysm, Thoracic/economics , Aortic Aneurysm, Thoracic/therapy , Aortic Dissection/economics , Aortic Dissection/therapy , Critical Care/economics , Critical Care/organization & administration , Current Procedural Terminology , Documentation/standards , Medicare , Humans , Male
8.
Policy Polit Nurs Pract ; 14(1): 6-15, 2013 Feb.
Article in English | MEDLINE | ID: mdl-23528433

ABSTRACT

Revisiting scope of practice (SOP) policies for nurse practitioners (NPs) is necessary in the evolving primary care environment with goals to provide timely access, improve quality, and contain cost. This study utilized qualitative descriptive design to investigate NP roles and responsibilities as primary care providers (PCPs) in Massachusetts and their perceptions about barriers and facilitators to their SOP. Through purposive sampling, 23 NPs were recruited and they participated in group and individual interviews in spring 2011.The interviews were audio recorded and transcribed. Data were analyzed using Atlas.ti 6.0 software, and content analysis was applied. In addition to NP roles and responsibilities, three themes affecting NP SOP were: regulatory environment; comprehension of NP role; and work environment. NPs take on similar responsibilities as physicians to deliver primary care services; however, the regulatory environment and billing practices, lack of comprehension of the NP role, and challenging work environments limit successful NP practice.


Subject(s)
Health Workforce/organization & administration , Nurse Practitioners/supply & distribution , Nurse's Role , Practice Patterns, Nurses'/organization & administration , Primary Health Care/organization & administration , Adult , Evaluation Studies as Topic , Female , Health Policy , Humans , Interviews as Topic , Male , Middle Aged , Quality of Health Care , United States
9.
Nat Rev Neurosci ; 13(6): 365-79, 2012 May 10.
Article in English | MEDLINE | ID: mdl-22573027

ABSTRACT

Pioneering studies in the middle of the twentieth century revealed substantial diversity among mammalian chemical synapses and led to a widely accepted classification of synapse type on the basis of neurotransmitter molecule identity. Subsequently, powerful new physiological, genetic and structural methods have enabled the discovery of much deeper functional and molecular diversity within each traditional neurotransmitter type. Today, this deep diversity continues to pose both daunting challenges and exciting new opportunities for neuroscience. Our growing understanding of deep synapse diversity may transform how we think about and study neural circuit development, structure and function.


Subject(s)
Mammals/physiology , Synapses/chemistry , Synapses/physiology , Animals , Biodiversity , Humans , Memory/physiology , Nervous System Diseases/physiopathology , Neural Pathways/physiology , Neuronal Plasticity/physiology , Proteomics , Synapses/classification , Synaptic Transmission
10.
Neuron ; 68(4): 639-53, 2010 Nov 18.
Article in English | MEDLINE | ID: mdl-21092855

ABSTRACT

A lack of methods for measuring the protein compositions of individual synapses in situ has so far hindered the exploration and exploitation of synapse molecular diversity. Here, we describe the use of array tomography, a new high-resolution proteomic imaging method, to determine the composition of glutamate and GABA synapses in somatosensory cortex of Line-H-YFP Thy-1 transgenic mice. We find that virtually all synapses are recognized by antibodies to the presynaptic phosphoprotein synapsin I, while antibodies to 16 other synaptic proteins discriminate among 4 subtypes of glutamatergic synapses and GABAergic synapses. Cell-specific YFP expression in the YFP-H mouse line allows synapses to be assigned to specific presynaptic and postsynaptic partners and reveals that a subpopulation of spines on layer 5 pyramidal cells receives both VGluT1-subtype glutamatergic and GABAergic synaptic inputs. These results establish a means for the high-throughput acquisition of proteomic data from individual cortical synapses in situ.


Subject(s)
Proteomics/methods , Synapses/chemistry , Synapses/ultrastructure , Animals , Biomarkers/analysis , Biomarkers/metabolism , Immunohistochemistry , Mice , Mice, Inbred C57BL , Mice, Transgenic , Microscopy, Fluorescence/methods , Microscopy, Fluorescence/trends , Protein Array Analysis/methods , Proteomics/trends , Receptors, GABA/analysis , Receptors, GABA/metabolism , Synapses/metabolism , Synapsins/analysis , Synapsins/metabolism , Vesicular Glutamate Transport Protein 1/analysis , Vesicular Glutamate Transport Protein 1/metabolism , Vesicular Glutamate Transport Protein 2/analysis , Vesicular Glutamate Transport Protein 2/metabolism
11.
Cold Spring Harb Protoc ; 2010(11): pdb.prot5523, 2010 Nov 01.
Article in English | MEDLINE | ID: mdl-21041396

ABSTRACT

Array tomography is a volumetric microscopy method based on physical serial sectioning. Ultrathin sections of a plastic-embedded tissue are cut using an ultramicrotome, bonded in an ordered array to a glass coverslip, stained as desired, and imaged. The resulting two-dimensional image tiles can then be reconstructed computationally into three-dimensional volume images for visualization and quantitative analysis. The minimal thickness of individual sections permits high-quality rapid staining and imaging, whereas the array format allows reliable and convenient section handling, staining, and automated imaging. Also, the physical stability of the arrays permits images to be acquired and registered from repeated cycles of staining, imaging, and stain elution, as well as from imaging using multiple modalities (e.g., fluorescence and electron microscopy). Array tomography makes it possible to visualize and quantify previously inaccessible features of tissue structure and molecular architecture. However, careful preparation of the tissue is essential for successful array tomography; these steps can be time-consuming and require some practice to perfect. This protocol describes the fixation and processing required to prepare tissues for immunofluorescence array tomography.


Subject(s)
Brain/anatomy & histology , Imaging, Three-Dimensional/methods , Rodentia/anatomy & histology , Tomography/methods , Animals , Microtomy/methods , Staining and Labeling/methods
12.
Cold Spring Harb Protoc ; 2010(11): pdb.prot5524, 2010 Nov 01.
Article in English | MEDLINE | ID: mdl-21041397

ABSTRACT

Array tomography is a volumetric microscopy method based on physical serial sectioning. Ultrathin sections of a plastic-embedded tissue are cut using an ultramicrotome, bonded in an ordered array to a glass coverslip, stained as desired, and imaged. The resulting two-dimensional image tiles can then be reconstructed computationally into three-dimensional volume images for visualization and quantitative analysis. The minimal thickness of individual sections permits high-quality rapid staining and imaging, whereas the array format allows reliable and convenient section handling, staining, and automated imaging. Also, the physical stability of the arrays permits images to be acquired and registered from repeated cycles of staining, imaging, and stain elution, as well as from imaging using multiple modalities (e.g., fluorescence and electron microscopy). Array tomography makes it possible to visualize and quantify previously inaccessible features of tissue structure and molecular architecture. However, careful preparation of the tissue is essential for successful array tomography; these steps can be time consuming and require some practice to perfect. This protocol describes the sectioning of embedded tissues and the mounting of the serial arrays. The procedures require some familiarity with the techniques used for ultramicrotome sectioning for electron microscopy.


Subject(s)
Imaging, Three-Dimensional/methods , Microtomy/methods , Tissue Embedding/methods , Tomography/methods , Animals , Brain/anatomy & histology , Rodentia/anatomy & histology , Staining and Labeling/methods
13.
Cold Spring Harb Protoc ; 2010(11): pdb.prot5525, 2010 Nov 01.
Article in English | MEDLINE | ID: mdl-21041398

ABSTRACT

Array tomography is a volumetric microscopy method based on physical serial sectioning. Ultrathin sections of a plastic-embedded tissue are cut using an ultramicrotome, bonded in an ordered array to a glass coverslip, stained as desired, and imaged. The resulting two-dimensional image tiles can then be reconstructed computationally into three-dimensional volume images for visualization and quantitative analysis. The minimal thickness of individual sections permits high-quality rapid staining and imaging, whereas the array format allows reliable and convenient section handling, staining, and automated imaging. Also, the physical stability of the arrays permits images to be acquired and registered from repeated cycles of staining, imaging, and stain elution, as well as from imaging using multiple modalities (e.g., fluorescence and electron microscopy). Array tomography makes it possible to visualize and quantify previously inaccessible features of tissue structure and molecular architecture. However, careful preparation of the tissue is essential for successful array tomography; these steps can be time-consuming and require some practice to perfect. In this protocol, tissue arrays are prepared for imaging by tagging with primary antibodies against specific cellular targets, followed by labeling with fluorescent secondary antibodies. Alternatively, fluorescent proteins that have been introduced into the tissue before dissection can be used.


Subject(s)
Imaging, Three-Dimensional/methods , Immunohistochemistry/methods , Staining and Labeling/methods , Tomography/methods , Animals , Antibodies/isolation & purification , Brain/anatomy & histology , Microtomy/methods , Rodentia/anatomy & histology , Tissue Embedding/methods
14.
Cold Spring Harb Protoc ; 2010(11): pdb.prot5526, 2010 Nov 01.
Article in English | MEDLINE | ID: mdl-21041399

ABSTRACT

Array tomography is a volumetric microscopy method based on physical serial sectioning. Ultrathin sections of a plastic-embedded tissue are cut using an ultramicrotome, bonded in an ordered array to a glass coverslip, stained as desired, and imaged. The resulting two-dimensional image tiles can then be reconstructed computationally into three-dimensional volume images for visualization and quantitative analysis. The minimal thickness of individual sections permits high-quality rapid staining and imaging, whereas the array format allows reliable and convenient section handling, staining, and automated imaging. Also, the physical stability of the arrays permits images to be acquired and registered from repeated cycles of staining, imaging, and stain elution, as well as from imaging using multiple modalities (e.g., fluorescence and electron microscopy). Array tomography makes it possible to visualize and quantify previously inaccessible features of tissue structure and molecular architecture. However, careful preparation of the tissue is essential for successful array tomography; these steps can be time-consuming and require some practice to perfect. In this protocol, tissue arrays are imaged using conventional wide-field fluorescence microscopy. Images can be captured manually or, with the appropriate software and hardware, the process can be automated.


Subject(s)
Imaging, Three-Dimensional/methods , Microscopy, Fluorescence/methods , Tomography/methods , Animals , Brain/anatomy & histology , Immunohistochemistry/methods , Microtomy/methods , Rodentia/anatomy & histology , Staining and Labeling/methods , Tissue Embedding/methods
15.
Cold Spring Harb Protoc ; 2010(11): pdb.prot5527, 2010 Nov 01.
Article in English | MEDLINE | ID: mdl-21041400

ABSTRACT

Array tomography is a volumetric microscopy method based on physical serial sectioning. Ultrathin sections of a plastic-embedded tissue are cut using an ultramicrotome, bonded in an ordered array to a glass coverslip, stained as desired, and imaged. The resulting two-dimensional image tiles can then be reconstructed computationally into three-dimensional volume images for visualization and quantitative analysis. The minimal thickness of individual sections permits high-quality rapid staining and imaging, whereas the array format allows reliable and convenient section handling, staining, and automated imaging. Also, the physical stability of the arrays permits images to be acquired and registered from repeated cycles of staining, imaging, and stain elution, as well as from imaging using multiple modalities (e.g., fluorescence and electron microscopy). Array tomography makes it possible to visualize and quantify previously inaccessible features of tissue structure and molecular architecture. However, careful preparation of the tissue is essential for successful array tomography; these steps can be time-consuming and require some practice to perfect. Successful array tomography requires that the captured images be properly stacked and aligned, and the software to achieve these ends is freely available. This protocol describes the construction of volumetric image stacks from images of fluorescently labeled arrays for three-dimensional image visualization, analysis, and archiving.


Subject(s)
Imaging, Three-Dimensional/methods , Tomography/methods , Animals , Brain/anatomy & histology , Immunohistochemistry/methods , Microscopy, Fluorescence/methods , Microtomy/methods , Rodentia/anatomy & histology , Staining and Labeling/methods , Tissue Embedding/methods
16.
Cold Spring Harb Protoc ; 2010(11): pdb.top89, 2010 Nov 01.
Article in English | MEDLINE | ID: mdl-21041404

ABSTRACT

Array tomography, which is described in this article, is a volumetric microscopy method based on physical serial sectioning. Ultrathin sections of a plastic-embedded tissue are cut using an ultramicrotome, bonded in an ordered array to a glass coverslip, stained as desired, and imaged. The resulting two-dimensional image tiles can then be reconstructed computationally into three-dimensional volume images for visualization and quantitative analysis. The minimal thickness of individual sections permits high-quality rapid staining and imaging, whereas the array format allows reliable and convenient section handling, staining, and automated imaging. Also, the physical stability of the arrays permits images to be acquired and registered from repeated cycles of staining, imaging, and stain elution, as well as from imaging using multiple modalities (e.g., fluorescence and electron microscopy). Although the fabrication procedures can be relatively difficult, the high resolution, depth invariance, and molecular discrimination offered by array tomography justify the effort involved. Array tomography makes it possible to visualize and quantify previously inaccessible features of tissue structure and molecular architecture.


Subject(s)
Imaging, Three-Dimensional/methods , Microscopy, Fluorescence/methods , Tomography/methods , Microtomy , Staining and Labeling/methods , Tissue Embedding
17.
Cell ; 139(2): 380-92, 2009 Oct 16.
Article in English | MEDLINE | ID: mdl-19818485

ABSTRACT

Synapses are asymmetric cellular adhesions that are critical for nervous system development and function, but the mechanisms that induce their formation are not well understood. We have previously identified thrombospondin as an astrocyte-secreted protein that promotes central nervous system (CNS) synaptogenesis. Here, we identify the neuronal thrombospondin receptor involved in CNS synapse formation as alpha2delta-1, the receptor for the anti-epileptic and analgesic drug gabapentin. We show that the VWF-A domain of alpha2delta-1 interacts with the epidermal growth factor-like repeats common to all thrombospondins. alpha2delta-1 overexpression increases synaptogenesis in vitro and in vivo and is required postsynaptically for thrombospondin- and astrocyte-induced synapse formation in vitro. Gabapentin antagonizes thrombospondin binding to alpha2delta-1 and powerfully inhibits excitatory synapse formation in vitro and in vivo. These findings identify alpha2delta-1 as a receptor involved in excitatory synapse formation and suggest that gabapentin may function therapeutically by blocking new synapse formation.


Subject(s)
CD36 Antigens/metabolism , Calcium Channels/metabolism , Neurogenesis , Synapses , Amines/pharmacology , Animals , Calcium Channels, L-Type , Cyclohexanecarboxylic Acids/pharmacology , Gabapentin , Mice , Neuronal Plasticity , Neurons/metabolism , Rats , Rats, Sprague-Dawley , Synapses/drug effects , gamma-Aminobutyric Acid/pharmacology
18.
Mol Cell ; 30(3): 381-92, 2008 May 09.
Article in English | MEDLINE | ID: mdl-18471983

ABSTRACT

Phosphoinositide 3-kinase (PI3K) and its product phosphatidylinositol(3,4,5)-trisphosphate (PIP3) control cell growth, migration, and other processes by recruiting proteins with pleckstrin homology (PH) domains and possibly other domains to the plasma membrane (PM). However, previous experimental and structural work with PH domains left conflicting evidence about which ones are PIP3 regulated. Here we used live-cell confocal imaging of 130 YFP-conjugated mouse PH domains and found that 20% translocated to the PM in response to receptor-generated PIP3 production. We developed a recursive-learning algorithm to predict PIP3 regulation of 1200 PH domains from different eukaryotes and validated that it accurately predicts PIP3 regulation. Strikingly, this algorithm showed that PIP3 regulation is specified by amino acids across the PH domain, not just the PIP3-binding pocket, and must have evolved several times independently from PIP3-insensitive ancestral PH domains. Finally, our algorithm and live-cell experiments provide a functional survey of PH domains in different species, showing that PI3K regulation increased from approximately two C. elegans and four Drosophila to 40 vertebrate proteins.


Subject(s)
Algorithms , Caenorhabditis elegans Proteins/metabolism , Microscopy, Confocal/methods , Models, Theoretical , Phosphatidylinositol Phosphates/metabolism , Recombinant Fusion Proteins/metabolism , Amino Acid Sequence , Animals , Caenorhabditis elegans , Caenorhabditis elegans Proteins/chemistry , Caenorhabditis elegans Proteins/genetics , Humans , Mice , Models, Molecular , Molecular Sequence Data , NIH 3T3 Cells , Phosphatidylinositol 3-Kinases/metabolism , Phosphatidylinositol 4,5-Diphosphate , Phylogeny , Protein Binding , Protein Conformation , Proteome/analysis , Recombinant Fusion Proteins/chemistry , Recombinant Fusion Proteins/classification , Recombinant Fusion Proteins/genetics , Sequence Alignment
19.
Mol Cell Proteomics ; 6(3): 413-24, 2007 Mar.
Article in English | MEDLINE | ID: mdl-17192258

ABSTRACT

Cellular responses to inputs that vary both temporally and spatially are determined by complex relationships between the components of cell signaling networks. Analysis of these relationships requires access to a wide range of experimental reagents and techniques, including the ability to express the protein components of the model cells in a variety of contexts. As part of the Alliance for Cellular Signaling, we developed a robust method for cloning large numbers of signaling ORFs into Gateway entry vectors, and we created a wide range of compatible expression platforms for proteomics applications. To date, we have generated over 3000 plasmids that are available to the scientific community via the American Type Culture Collection. We have established a website at www.signaling-gateway.org/data/plasmid/ that allows users to browse, search, and blast Alliance for Cellular Signaling plasmids. The collection primarily contains murine signaling ORFs with an emphasis on kinases and G protein signaling genes. Here we describe the cloning, databasing, and application of this proteomics resource for large scale subcellular localization screens in mammalian cell lines.


Subject(s)
Protein Kinases/metabolism , Proteomics , Animals , Cell Line , Cloning, Molecular , DNA, Complementary/genetics , Databases, Factual , Mice , Open Reading Frames/genetics , Plasmids , Protein Kinases/genetics , Signal Transduction
20.
Curr Opin Chem Biol ; 9(1): 82-7, 2005 Feb.
Article in English | MEDLINE | ID: mdl-15701458

ABSTRACT

As thousands of new genes are identified in genomics efforts, the rush is on to learn something about the functional roles of the proteins encoded by those genes. Clues to protein functions, activation states and protein-protein interactions have been revealed in focused studies of protein localization. With technical breakthroughs such as GFP protein tagging and recombinase cloning systems, large-scale screens of protein localization are now being undertaken.


Subject(s)
Aging/genetics , Genomics/methods , Proteins , Animals , Green Fluorescent Proteins/genetics , Green Fluorescent Proteins/metabolism , Humans , Proteins/genetics , Proteins/metabolism , Proteins/physiology , Yeasts/genetics , Yeasts/metabolism
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