Genome-Wide Association Analysis Reveals Genetic Architecture and Candidate Genes Associated with Grain Yield and Other Traits under Low Soil Nitrogen in Early-Maturing White Quality Protein Maize Inbred Lines.

Maize production in the savannas of sub-Saharan Africa (SSA) is constrained by the low nitrogen in the soils. The identification of quantitative trait loci (QTL) conferring tolerance to low soil nitrogen (low-N) is crucial for the successful breeding of high-yielding QPM maize genotypes under low-N conditions. The objective of this study was to identify QTLs significantly associated with grain yield and other low-N tolerance-related traits under low-N. The phenotypic data of 140 early-maturing white quality protein maize (QPM) inbred lines were evaluated under low-N. The inbred lines were genotyped using 49,185 DArTseq markers, from which 7599 markers were filtered for population structure analysis and genome-wide association study (GWAS). The inbred lines were grouped into two major clusters based on the population structure analysis. The GWAS identified 24, 3, 10, and 3 significant SNPs respectively associated with grain yield, stay-green characteristic, and plant and ear aspects, under low-N. Sixteen SNP markers were physically located in proximity to 32 putative genes associated with grain yield, stay-green characteristic, and plant and ear aspects. The putative genes GRMZM2G127139, GRMZM5G848945, GRMZM2G031331, GRMZM2G003493, GRMZM2G067964, GRMZM2G180254, on chromosomes 1, 2, 8, and 10 were involved in cellular nitrogen assimilation and biosynthesis, normal plant growth and development, nitrogen assimilation, and disease resistance. Following the validation of the markers, the putative candidate genes and SNPs could be used as genomic markers for marker-assisted selection, to facilitate genetic gains for low-N tolerance in maize production.

Genetic Analysis of Early White Quality Protein Maize Inbreds and Derived Hybrids under Low-Nitrogen and Combined Drought and Heat Stress Environments.

An increase in the average global temperature and drought is anticipated in sub-Saharan Africa (SSA) as a result of climate change. Therefore, early white quality protein maize (QPM) hybrids with tolerance to combined drought and heat stress (CDHS) as well as low soil nitrogen (low-nitrogen) have the potential to mitigate the adverse effects of climate change. Ninety-six early QPM hybrids and four checks were evaluated in Nigeria for two years under CDHS, low-nitrogen, and in optimal environments. The objectives of this study were to determine the gene action conditioning grain yield, assess the performance of the early QPM inbred lines and identify high yielding and stable QPM hybrids under CDHS, low-nitrogen and optimal environment conditions. There was preponderance of the non-additive gene action over the additive in the inheritance of grain yield under CDHS environment conditions, while additive gene action was more important for grain yield in a low-nitrogen environment. TZEQI 6 was confirmed as an inbred tester under low N while TZEQI 113 × TZEQI 6 was identified as a single-cross tester under low-nitrogen environments. Plant and ear aspects were the primary contributors to grain yield under CDHS and low-nitrogen environments. TZEQI 6 × TZEQI 228 and the check TZEQI 39 × TZEQI 44 were the highest yielding under each stress environment and across environments. Hybrid TZEQI 210 × TZEQI 188 was the most stable across environments and should be tested on-farm and commercialized in SSA.