[A retrospective survey on allergic reactions by oxaliplatin].

Fifty-six patients treated with oxaliplatin were examined in order to clarify the factors that influence the appearance of allergic reactions by oxaliplatin at Kyoto City Hospital between January 2009 and December 2009, retrospectively. The number of patients in allergic and non-allergic group was 10 and 46, respectively. Patients' characteristics, the presence of hepatic metastasis, hepatic failure and kidney failure, albumin and white blood cell counts were compared in both groups. In the allergic group, the rate of hepatic metastasis was significantly higher than that in the non-allergic group (p=0.011). In conclusion, hepatic metastasis was suggested to be a factor that causes allergic reactions after administration of oxaliplatin.

Specific fragmentation of the K-shell excited/ionized pyridine derivatives studied by electron impact: 2-, 3- and 4-methylpyridine.

Fragmentation of the pyridine ring upon K-shell excitation/ionization has been studied with gaseous 2-, 3- and 4-methylpyridine by the electron-impact method. Ab initio molecular orbital (MO) calculations were also carried out to explore electronic states correlating with specific fragments. Some specific fragmentation channels were identified from the ionic fragments enhanced characteristically at the N 1s edge. Yields of the C(2)HN(+) and C(5)H(5)(+)/C(5)H(6)(+) ions show that the fission of the N-C2 and C4-C5/C5-C6 bonds of the ring is likely to occur after the N 1s excitation and ionization. Ab initio MO calculations for the 2-methylpyridine molecule indicate that the dissociation channels to produce these ions are only accessible through the excited states of the parent molecular dication, which can be formed by Auger decays after the N 1s ionization. Fragment ions via hydrogen rearrangement are produced as well, but the rearrangement is not a phenomenon specific to the K-shell excitation/ionization.

Molecular understanding of the UCST-type phase separation behavior of a stereocontrolled poly(N-isopropylacrylamide) in bis(2-methoxyethyl) ether.

The upper critical solution temperature (UCST)-type phase separation of an isotactic-rich poly( N-isopropylacrylamide) (PNiPA) in bis(2-methoxyethyl) ether (diglyme) has been investigated by turbidity measurement and infrared (IR) spectroscopy. The IR spectra of stereocontrolled PNiPAs in various solvents have clearly indicated that the amide I bands do not directly reflect the tacticity of the polymer. The relative intensity of the amide I bands changes depending upon the molecular environment around the amide groups of PNiPA, which is influenced by the tacticity. During the UCST-type phase separation of the isotactic-rich PNiPA in diglyme, the amide I band at around 1625 cm (-1) changes. To link the IR spectral change with the molecular information, quantum chemical calculations have been carried out for NiPA n-mers ( n = 1-4) with an isotactic stereosequence. The result has suggested that the amide I band at around 1625 cm (-1) arises from a helical structure formed by the isotactic stereosequences in the PNiPA main chain with the aid of intramolecular CO...H-N hydrogen bonding. The experimental IR spectra have revealed that the helical structures are unfolded as the temperature rises. The folding and unfolding of the isotactic sequences in the main chain may induce the thermal change in the solubility of the isotactic rich PNiPA in diglyme, resulting in the UCST-type phase separation of the solution.

Relationship between the broad OH stretching band of methanol and hydrogen-bonding patterns in the liquid phase.

The OH stretching (nu(OH)) band of methanol observed in condensed phase has been analyzed in terms of hydrogen-bonding patterns. Quantum chemical calculations for methanol clusters have revealed that broadening of the nu(OH) envelope is reasonably reproduced by considering nearest and next-nearest neighbor interactions through hydrogen bonding. Because the hydrogen bond formed between donor (D) and acceptor (A) is cooperatively strengthened or weakened by a newly formed hydrogen bond at D or A, we have proposed the following notation for hydrogen-bonding patterns of monohydric alcohols: a(D)DAd(A)a(A), where a is the number of protons accepted by D (a(D)) or A (a(A)), and d(A) is the number of protons donated by A. The indicator of the hydrogen-bond strength, which is given by M(OH) = a(D) + d(A) - a(A), is correlated well with the nu(OH) wavenumber of the methanol molecule D participating in the a(D)DAd(A)a(A) pattern. The correlation between M(OH) and the hydrogen-bonding energy of the a(D)DAd(A)a(A) pattern has also been deduced from the calculation results for the clusters. The nu(OH) bands of methanol measured in the CCl4 solution and pure liquid have been successfully analyzed by the method proposed here.

Absolute configuration and conformation analysis of 1-phenylethanol by matrix-isolation infrared and vibrational circular dichroism spectroscopy combined with density functional theory calculation.

The absolute configuration and conformation of 1-phenylethanol (1-PhEtOH) have been determined by matrix-isolation infrared (IR) and vibrational circular dichroism (VCD) spectroscopy combined with quantum chemical calculations. Quantum chemical calculations have identified that there are three conformers, namely, I, II, and III, in which characteristic intramolecular interactions are found. The IR spectrum-conformation correlation for 1-PhEtOH has been developed by the Ar matrix-isolation IR measurement and used for the assignments of the observed IR bands. In a dilute CCl(4) solution, 1-PhEtOH exists predominantly as conformer I along with a trace amount of conformer II. By considering conformations and intermolecular hydrogen-bonding in the spectral simulation for (S)-1-PhEtOH, we have successfully reproduced the VCD spectrum of (-)-1-PhEtOH observed in a dilute CS(2) solution. Thus, (-)-1-PhEtOH is of S-configuration and conformer I in the dilute solution. The same method has been applied to analyze the VCD spectra measured in the liquid state of (-)-1-PhEtOH. The absolute configuration of 1-PhEtOH in the condensed phase is enabled by identifying VCD bands that are insensitive to conformational changes and intermolecular interactions. The present work provides a combinatorial procedure for determination of both the absolute configuration and the conformation of chiral molecules in a dilute solution and condensed phase.

Matrix-isolation infrared spectroscopy of the rotational isomers of 1,2-, 1,3-, and 1,4-benzenedicarboxaldehyde.

Rotational isomers (rotamers) of the three structural isomers of benzenedicarboxaldehydes (1,2-, 1,3-, and 1,4-derivatives) have been investigated in detail using matrix-isolation infrared spectroscopy in the 600-4000 cm-1 region, combined with UV photoexcitation and density-functional theory (DFT) calculations. Two rotamers were identified for 1,2- and 1,4-benzenedicarboxaldehyde (1,2- and 1,4-BDA, respectively), while three rotamers were identified for 1,3-benzenedicarboxaldehyde (1,3-BDA) in infrared spectra upon UV-irradiation. Most of the observed infrared bands of each rotamer have been assigned. The energetic relationships among the rotamers were revealed based on the infrared data and the DFT calculations. It is shown that the intramolecular C-H...H-C interaction in the H-syn rotamer or the C-H...O=C hydrogen bonding in the anti rotamer of 1,2-BDA results in the blue-shift of the aldehyde C-H stretching band and the shortening of the aldehyde C-H bond length. Both photoinduced rotational isomerization and rearrangement were observed upon UV irradiation for 1,2-BDA. The structure of the major enol isomer formed as the result of the photochemical rearrangement of 1,2-BDA is determined.

Origin of the blue shift of the CH stretching band for 2-butoxyethanol in water.

The blue shift of the isolated CD stretching band of 2-butoxyethanol (C4E1), which is observed for the aqueous solution during the dilution process, has been investigated by infrared (IR) spectroscopy and quantum chemical calculations. Mono-deuterium-labeled C4E1's were employed to remove the severe overlapping among the CH stretching bands. The isolated CD stretching mode of the alpha-methylene in the butoxy group shows a large blue shift, while those of the beta-methylene and methyl groups are not largely shifted. The spectral simulation results for the C4E1/H2O complexes indicate that the large blue shift of the CD stretching band of the butoxy group arises mainly from the hydration of the ether oxygen atom.

Photoinduced amino-imino tautomerism: an infrared study of 2-amino-5-methylpyridine in a low-temperature argon matrix.

The photoreaction of 2-amino-5-methylpyridine was investigated by matrix-isolation infrared spectroscopy and DFT calculation. Photoinduced reversible amino (N=C-NH(2))-imino (NH-C=NH) tautomerism was found between 2-amino-5-methylpyridine and 5-methyl-2(1H)-pyridinimine; the amino tautomer changes to the imino tautomer by UV irradiation (340>lambda>or= 300 nm) and the reverse change occurs by longer-wavelength light irradiation (420>lambda>or= 340 nm). The results of the CASSCF calculation revealed that the amino-imino tautomerism proceeds in vibrational relaxation process from electronic excited state to the ground state. The IR spectra of 2-amino-5-methylpyridine in the T(1) state and 5-methyl-2-pyridinamino radical were also obtained by UV irradiation (lambda>or= 300 nm).

Geometrical behavior of hydrogen bonding patterns in the alpha-dodecyl-omega-hydroxy-tris(oxyethylene)-water system monitored by near infrared spectroscopy.

Changes in the geometry of hydrogen bonding patterns in the alpha-dodecyl-omega-hydroxy-tris(oxyethylene) (C(12)E(3))-water system have been investigated by near infrared (NIR) spectroscopy. In the 5,300-4,600 cm(-1) region, the characteristic bands for C(12)E(3) and water can be separately investigated, since the combination bands of the OH stretching and its COH bending of alcohols are observed at 5,000-4,650 cm(-1), whereas the combination bands of the OH stretching and its HOH bending of water, at 5,300-5,000 cm(-1). The NIR result has revealed that the addition of water to C(12)E(3) promotes the formation of the OHcdots, three dots, centeredOHcdots, three dots, centeredO hydrogen bonds.

The effect of cooperative hydrogen bonding on the OH stretching-band shift for water clusters studied by matrix-isolation infrared spectroscopy and density functional theory.

Infrared spectra of the water clusters have been measured in the N2 + O2 matrix. The aggregation process of water in the matrix has been monitored by annealing the deposited samples up to 40 K and UV irradiation. The monomer, dimer, cyclic trimer and cyclic pentamer are found as water clusters in the matrix. For the hexamer, several structures such as chair, cage, prism, bag 1 and/or book 1 are likely to exist. By UV irradiation, the cyclic pentamer is predominantly formed from the monomer and dimer. On the other hand, by annealing the deposited sample, several hexamers are formed. The theoretical calculation for water clusters has revealed that the formation of one hydrogen bonding in a hydrogen-bonded chain cooperatively enhances or diminishes the strength of another hydrogen bond. Both proton donor (D) and acceptor (A) participating in a hydrogen-bonding pair DA are capable of forming hydrogen bonding with the other water molecules; D can additionally accept two protons and donate one proton, and A can additionally donate two protons and accept one proton. We have proposed the classification of hydrogen-bonding patterns considering the cooperativity, denoting as d'a'DAd''a'', where d and a are integers indicating the number of proton donors and acceptors to D (the single prime) and A (the double prime), respectively. Then, a magnitude given by MOH = -d' + a' + d'' - a'' has been introduced, which is very useful for connecting the hydrogen-bonding patterns to their OH wavenumbers. As a result, it is revealed that the OH stretching bands of water clusters are characterized by eight indicators (free and MOH = -2, -1, 0, 1, 2, 3 and 4). The classification proposed here is applicable to the OH band analysis for the hydrogen-bonded water and alcohols in a condensed phase.

Hydration of short-chain poly(oxyethylene) in carbon tetrachloride: an infrared spectroscopic study.

Hydration of short-chain poly(oxyethylene)s, CH(3)(OCH(2)CH(2))(m)OCH(3) (abbreviated as C(1)E(m)()C(1)) (m = 1-3), in carbon tetrachloride has been studied by infrared spectroscopy. The O-H stretching vibrations of water in ternary solutions with H(2)O:C(1)E(m)C(1):CCl(4) mole ratios of 0.000418:0.005:0.995 to 0.000403:0.04:0.96 were analyzed. Two types of hydrogen bonds are formed in the interaction between water and C(1)E(m)C(1) in carbon tetrachloride; one is a monodentate hydrogen bond, in which only one of the O-H bonds of a water molecule participates in hydrogen bonding, and the other is a bidentate hydrogen bond, in which both of the O-H bonds of a water molecule participate in hydrogen bonding by bridging oxygen atoms separated by two or more monomer units on the polymer chain. An important finding is that the bidentate hydrogen-bond bridge is not formed between the nearest-neighbor oxygen atoms. This experimental observation supports the results of previous molecular dynamics simulations. The shortest oligomer of poly(oxyethylene), i.e., CH(3)OCH(2)CH(2)OCH(3) (1,2-dimethoxyethane) with a single monomer unit, is suggested not to be an adequate model for this polymer with respect to hydrogen bonding to water. The hydrogen bonding in a 1:1 C(1)E(m)C(1)-water adduct in carbon tetrachloride represents primitive incipient hydration of poly(oxyethylene). The present results indicate that both monodentate and bidentate hydrogen bonds are important and the latter is destabilized more rapidly than the former with increasing temperature. This dehydration process can be a potential mechanism of the poly(oxyethylene)-water phase separation.

Relationship between force constants and bond lengths for CX (X = C, Si, Ge, N, P, As, O, S, Se, F, Cl and Br) single and multiple bonds: formulation of Badger's rule for universal use.

Geometries and harmonic vibrational wave numbers were calculated on a series of simple compounds that contain the atoms of elements in the groups 14-17 by density functional theory at the B3LYP/6-311++G(3df,2pd) level. The calculated wave numbers agree well with the observed harmonic wave numbers with substantially the same accuracy for the compounds of the different groups. The stretching force constants of the CX (X = C, Si, Ge, N, P, As, O, S, Se, F, Cl and Br) single and multiple bonds were obtained. The CX stretching force constants increase with a decrease of the bond lengths as the element X in the same period goes from left to right in the periodic table. The individual intrinsic properties of the CX bonds are lost gradually with increasing the period of the element X. The unified interpretation of Badger's rule has enabled the formulation of a common equation for universal use f = 2.8 R(-3) to relate the force constants f (10(2) N m(-1)) and the reduced bond lengths R (10(-10) m).

Crystal structure of 1,10-dibromodecane and its infrared intensity in a urea clathrate and in the crystal.

The crystal structure of 1,10-dibromodecane belongs to the monoclinic system and the space group is P2(1)/c with lattice dimensions of a = 5.4574(3) A, b = 5.2814(4) A, c = 21.088(1) A and beta = 92.897(2) degrees and zeta = 2. Infrared spectra of 1,10-dibromodecane in a urea clathrate and in the crystal were observed to investigate the effect of molecular interaction on infrared intensity. The infrared intensity of the CH(2) waggings in the crystalline state is 1.5-1.9 times stronger on the relative basis than that in a urea clathrate, whereas those of CH(2) stretching, CH(2) rocking and CH(2) bending are almost the same in both states. The former enhancement is explained in terms of increase in the bond moment of the C(alpha)H(2) group on the basis of crystal structure and the electrostatic model. The relative intensity of two CH(2) asymmetric stretching changes between the two states. This is also analyzed by the use of the electrostatic model.

Experimental evidence for intramolecular blue-shifting C-H...O hydrogen bonding by matrix-isolation infrared spectroscopy.

Experimental evidence for intramolecular blue-shifting C-H...O hydrogen bonding is presented. Argon matrix-isolation infrared spectra of 1-methoxy-2-(dimethylamino)ethane exhibit a band at 3016.5 cm-1. Spectral behavior with annealing indicates that this band is assigned to the most stable conformer, trans-gauche-(trans|gauche'), with an intramolecular C-H...O hydrogen bond. Density functional calculations show that this band arises from the stretching vibration of the C-H bond participating in the formation of the C-H...O hydrogen bond. The C-H bond is shortened by 0.004 A, and the C-H stretching band is blue-shifted by at least 35 cm-1 on the formation of the hydrogen bond. The (C)H...O distance is calculated as 2.38 A, which is shorter than the corresponding van der Waals separation by 0.3 A.