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1.
Zootaxa ; 4970(1): 119130, 2021 May 13.
Article in English | MEDLINE | ID: mdl-34186906

ABSTRACT

A new marine Sargassum-boring species of Limnoria (Limnoriidae) is described on the basis of specimens obtained at Kamogawa-shi, Chiba Prefecture, Japan. Limnoria aspera sp. nov. shares a reduced mandibular palp to a seta, algal-feeding, and the clavate shaped epipod of the maxilliped with the other species of non-mandibular-palp group. L. aspera sp. nov. differs morphologically from the congeneric species by secondary unguis of pereopods and unique carinae of pleonite 5 and pleotelson. We describe the sequences of the mitochondrial COI gene and the nuclear 28S rDNA gene. L. aspera sp. nov. differs by 14.218.0% in p-distance based on COI sequences from other Japanese species, L. furca and L. nagatai.


Subject(s)
Isopoda/anatomy & histology , Isopoda/classification , Sargassum , Animals , DNA, Ribosomal/genetics , Genes, Mitochondrial , Japan
2.
Zootaxa ; 4550(2): 236-250, 2019 Jan 24.
Article in English | MEDLINE | ID: mdl-30790865

ABSTRACT

Previous research on the mitochondrial COI gene sequences of several populations of Limnoria nagatai Nunomura suggested a cryptic species from the Sea of Japan. A new species of algal-boring limnoriid is here described. Limnoria furca sp. nov. was collected from the holdfasts of Eisenia bicyclis on the Oki Islands and the Sea of Japan coast of Honshu and Kyushu Islands, Japan. L. furca sp. nov. is diagnosed morphologically by lacking a mandibular palp, faint subparallel carinae on the pleotelson, faint Y-shaped carinae on pereonite 5, the bifid lacinia mobilis of right mandible and the shapes of the secondary unguis on the pereopods. Similar species, L. segnoides Menzies, 1957 and L. nagatai Nunomura, 2012, are redescribed on the basis of the holotypes.


Subject(s)
Isopoda , Animals , Crustacea , Genes, Mitochondrial , Islands , Japan
3.
PLoS One ; 13(6): e0198451, 2018.
Article in English | MEDLINE | ID: mdl-29902241

ABSTRACT

The marine isopod genus Limnoria contains algae-eating species. Previous phylogeographic studies have suggested that Limnoria species feeding on buoyant kelp underwent low genetic differentiation on a large spatial scale because rafting on floating host kelps promotes high levels of gene flow. In this paper, we survey the genetic structure of Limnoria nagatai, which bores into the non-buoyant kelps Eisenia bicyclis and E. arborea. We analyze the mitochondrial DNA (cytochrome oxidase subunit I [COI] gene) and morphological traits of L. nagatai, and the host kelps E. bicyclis and E. arborea from 14 populations along the Japanese archipelago of the Pacific Ocean and the Sea of Japan. Four major lineages are recognized within L. nagatai: three lineages in the Pacific Ocean, and one lineage in the Sea of Japan which might be a cryptic species. For L. nagatai, we show high genetic differentiation between geographically separated habitats in the Pacific Ocean, while low differentiation is found among continuous host kelps habitats in the Pacific Ocean as well as the Sea of Japan. L. nagatai in E. bicyclis in the Pacific Ocean has experienced large population expansion after the Last Glacial Maximum (LGM), whereas the lineage in E. bicyclis in the Sea of Japan has not. We suggest that Limnoria feeding on non-buoyant kelps, may attain low genetic differentiation because they might be able to disperse long distance if the habitat of host kelps is continuous. The historical events affecting Limnoria after the LGM may differ between the coasts of the Pacific Ocean and the Sea of Japan.


Subject(s)
Electron Transport Complex IV/genetics , Isopoda/classification , Kelp/classification , Sequence Analysis, DNA/methods , Animals , Demography , Gene Flow , Isopoda/physiology , Japan , Kelp/physiology , Mitochondria/genetics , Pacific Ocean , Phylogeny , Phylogeography
4.
Ann Bot ; 121(3): 535-548, 2018 03 05.
Article in English | MEDLINE | ID: mdl-29293877

ABSTRACT

Background and Aims: Biogeographic transition zones are promising areas to study processes of biogeographic evolution and its influence on biological groups. The Mexican transition zone originated due to the overlap of Nearctic and Neotropical biota, which promoted great biological diversification. However, since most previous studies in this area were focused on revealing the phylogeography of Nearctic plants, how historical biogeographic configuration influenced the expansion and diversification of the Neotropical flora remains almost unknown. Using the cycad genus Dioon (Zamiaceae), this study aimed to test whether the biogeographic provinciality of the Mexican transition zone reflects the history of diversification of Neotropical plants. Methods: Two chloroplast DNA (cpDNA) regions were analysed from 101 specimens of 15 Dioon species to reveal the distribution of haplogroups. In addition, genome-wide single nucleotide polymorphisms (SNPs) from 84 specimens were used to test the concordance between phylogenetic clusters and the biogeographic provinces. An ultrametric tree was constructed from the sequences containing SNPs to reconstruct the biogeographic events of vicariance and dispersal of Dioon across the Neotropical biogeographic provinces. Key Results: Four Dioon lineages with strong phylogeographic structures were recognized using both cpDNA and SNP data. The lineages correspond to two clades that originated from a common ancestor in Eastern Mexico. One clade expanded and diversified in South-east Mexico and Central America. Another clade diversified into three lineages that dispersed to North-east, South and North-west Mexico. Each lineage was biogeographically delimitated. Biogeographic provinces might have provided disparate ecological conditions that facilitated speciation in Dioon since the Miocene. Conclusions: The current genetic structure and species diversity of Dioon depict the history of expansion and diversification of the northernmost Neotropical provinces. Past biogeographic connectivities were favoured by elevated topographies, since mountain systems served as corridors for the migration of Dioon and as refugia of tropical communities that diversified during the formation of modern Neotropical forests.


Subject(s)
Zamiaceae/genetics , Central America , DNA, Chloroplast/genetics , Genetic Variation/genetics , Haplotypes/genetics , Mexico , Phylogeny , Phylogeography , Polymorphism, Single Nucleotide/genetics , Zamiaceae/anatomy & histology
5.
Zootaxa ; 4232(2): zootaxa.4232.2.8, 2017 Feb 15.
Article in English | MEDLINE | ID: mdl-28264395

ABSTRACT

The marine seagrass-boring isopod, Limnoria rhombipunctata sp. nov. (Limnoriidae) is described from the rhizome of Phyllospadix iwatensis seagrass, in shallow coastal waters off Chiba Prefecture, Japan. L. rhombipunctata sp. nov. is distinguished from other Limnoria species by the unique carinae of pleonite 5 and pleotelson, two branched lacinia mobilis of the right mandible, 3 flagellar articles of antenna 1, and triangular epipod of the maxilliped. Specimens of L. magadanensis, a species similar to L. rhombipunctata sp. nov., are re-examined and compared with L. rhombipunctata sp. nov.


Subject(s)
Isopoda , Animals , Crustacea , Japan
6.
J Vis Exp ; (117)2016 11 25.
Article in English | MEDLINE | ID: mdl-27911369

ABSTRACT

Plant-pollinator interactions have been studied for approximately one hundred years. During that time, many field methods have been developed to clarify the pollination effectiveness of each pollinator for visited flowers. Pollinator observations have been one of the most common methods to identify pollinators, and bagging and cage experiments have been conducted to show the effectiveness of specific pollinators. In a previous study of Lycoris sanguinea var. sanguinea, its effective pollinators, the visitation frequencies of each floral visitor, and its reproductive strategies were not identified. This study reports the observation that small bees visited flowers that were partially opened (breaking buds). To the best of our knowledge, this phenomenon has not been reported previously. Further, this study investigates the hypothesis that small bees can pollinate at that flowering stage. This study demonstrates the basic methods of field experiments in pollination ecology using L. sanguinea var. sanguinea. Pollinator observations and digital video showed the visitation frequencies of each floral visitor. Bagging and cage experiments revealed that these flowers could be pollinated fully and that breaking-bud pollination could be important for the pollination of this plant species. The advantages and disadvantages of each method are discussed, and recent developments, including laboratory experiments, are described.


Subject(s)
Lycoris , Pollination , Animals , Bees , Ecology , Flowers
7.
J Plant Res ; 128(5): 803-11, 2015 Sep.
Article in English | MEDLINE | ID: mdl-26175010

ABSTRACT

Plant-pollinator interactions have usually been researched in flowers that have fully opened. However, some pollinators can visit flowers before full opening and contribute to fruit and seed sets. In this paper, we researched the pollination biology of flowers just starting to open in four field experiments. We observed the insect visitors to Lycoris sanguinea var. sanguinea for 3 years at five sites. These observations revealed that only small bees, Lasioglossum japonicum, often entered through tiny spaces between the tepals of 'breaking buds' (i.e. partially opened flowers) and collected pollen. We hypothesized that they can pollinate this species at the breaking-bud stage, when the stigma is located near the anthers. To measure the pollination effect of small bees at the breaking-bud stage, we bagged several breaking buds after small bees had visited them and examined whether these buds were pollinated. In bagging experiments, 30% of the breaking buds set fruit and seeds. Fruit-set ratios of the breaking buds did not differ significantly from those of the fully opened flowers, which had been visited by several insect species. We also counted the pollen grain numbers on the body of L. japonicum and on the anthers of randomly-selected and manipulated flowers. These experiments revealed that all of the captured bees had some pollen of target plants and that L. japonicum collected most of the pollen grains at the breaking-bud stage. Our results showed that the new pollination process, breaking-bud pollination, happened in breaking buds by L. japonicum, although there is no evidence to reveal that this is the most effective pollination method for L. sanguinea var. sanguinea. In principle, this new pollination process can occur in other flowering plants and our results are a major contribution to studies of plant-pollinator interactions.


Subject(s)
Bees/physiology , Lycoris/physiology , Pollination , Animals , Appetitive Behavior , Japan
8.
J Plant Res ; 122(5): 509-21, 2009 Sep.
Article in English | MEDLINE | ID: mdl-19529882

ABSTRACT

Introgression has been considered to be one of main factors leading to phylogenetic incongruence among different datasets at lower taxonomic levels. In the plants of Pinaceae, the mtDNA, cpDNA, and nuclear DNA (nrDNA) may have different evolutionary histories through introgression because they are inherited maternally, paternally and biparentally, respectively. We compared mtDNA, cpDNA, and two low-copy nrDNA phylogenetic trees in the genus Pinus subgenus Strobus, in order to detect unknown past introgression events in this group. nrDNA trees were mostly congruent with the cpDNA tree, and supported the recent sectional and subsectional classification system. In contrast, mtDNA trees split the members of sect. Quinquefoliae into two groups that were not observed in the other gene trees. The factors constituting incongruence may be divided into the following two categories: the different splits within subsect. Strobus, and the non-monophyly of subsect. Gerardianae. The former was hypothesized to have been caused by the past introgression of cpDNA, mtDNA or both between Eurasian and North American species through Beringia. The latter was likely caused by the chimeric structure of the mtDNA sequence of P. bungeana, which might have originated through past hybridization, or through a horizontal transfer event and subsequent recombination.


Subject(s)
Cell Nucleus/genetics , Chloroplasts/genetics , Genes, Mitochondrial/genetics , Genes, Plant , Pinus/genetics , Base Sequence , DNA, Chloroplast/genetics , DNA, Mitochondrial/genetics , Geography , Molecular Sequence Data , Phylogeny
9.
Mol Ecol ; 17(23): 5092-103, 2008 Dec.
Article in English | MEDLINE | ID: mdl-19120991

ABSTRACT

The reproductive isolation barriers and the mating patterns among Pinus pumila, P. parviflora var. pentaphylla and their hybrids were examined by flowering phenology and genetic assays of three life stages: airborne-pollen grains, adults and seeds, in a hybrid zone on Mount Apoi, Hokkaido, Japan. Chloroplast DNA composition of the airborne-pollen was determined by single-pollen polymerase chain reaction. Mating patterns were analysed by estimating the molecular hybrid index of the seed parent, their seed embryos and pollen parents. The observation of flowering phenology showed that the flowering of P. pumila precedes that of P. parviflora var. pentaphylla by about 6 to 10 days within the same altitudinal ranges. Although this prezygotic isolation barrier is effective, the genetic assay of airborne-pollen showed that the two pine species, particularly P. pumila, still have chances to form F(1) hybrid seeds. Both parental species showed a strong assortative mating pattern; F(1) seeds were found in only 1.4% of seeds from P. pumila mother trees and not at all in P. parviflora var. pentaphylla. The assortative mating was concluded as the combined result of flowering time differentiation and cross-incompatibility. In contrast to the parental species, hybrids were fertilized evenly by the two parental species and themselves. The breakdown of prezygotic barriers (intermediate flowering phenology) and cross-incompatibility may account for the unselective mating. It is suggested that introgression is ongoing on Mount Apoi through backcrossing between hybrids and parental species, despite strong isolation barriers between the parental species.


Subject(s)
Hybridization, Genetic , Pinus/genetics , Pollen/genetics , DNA, Chloroplast/genetics , DNA, Mitochondrial/genetics , Genetics, Population , Genotype , Japan , Reproduction/genetics , Seeds/genetics
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