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1.
Nucleic Acids Res ; 28(18): 3642-8, 2000 Sep 15.
Article in English | MEDLINE | ID: mdl-10982887

ABSTRACT

We describe the unique structural features of a large telomere repeat DNA complex (TRDC) of >20 kb generated by a simple PCR using (TTAGGG)(4) and (CCCTAA)(4) as both primers and templates. Although large, as determined by conventional agarose gel electrophoresis, the TRDC was found to consist of short single-stranded DNA telomere repeat units of between several hundred and 3000 bases, indicating that it is a non-covalent complex comprising short cohesive telomere repeat units. S1 nuclease digestion showed that the TRDC contains both single- and double-stranded portions stable enough to survive glycerol density gradient centrifugation, precipitation with ethanol and gel electrophoresis. Sedimentation analysis suggests that a part of the TRDC is non-linear and consists of a three-dimensional network structure. After treatment with Werner DNA helicase the TRDC dissociated into smaller fragments, provided that human replication protein A was present, indicating that: (i) the TRDC is a new substrate for the Werner syndrome helicase; (ii) the telomere repeat sequence re-anneals rapidly unless unwound single-stranded regions are protected by replication protein A; (iii) the TRDC may provide a new clue to understanding deleterious telomere-totelomere interactions that can lead to genomic instability. Some properties of the TRDC account for the extra-chromosomal telomere repeat (ECTR) DNA that exists in telomerase-negative immortalized cell lines and may be involved in maintaining telomeres.


Subject(s)
DNA Helicases/metabolism , DNA-Binding Proteins/metabolism , DNA/chemistry , Repetitive Sequences, Nucleic Acid , Telomere , Werner Syndrome/enzymology , Centrifugation, Density Gradient , Exodeoxyribonucleases , Humans , Polymerase Chain Reaction , Protein Binding , RecQ Helicases , Replication Protein A , Single-Strand Specific DNA and RNA Endonucleases/metabolism , Werner Syndrome/genetics , Werner Syndrome Helicase
2.
Mech Ageing Dev ; 115(3): 189-98, 2000 Jun 20.
Article in English | MEDLINE | ID: mdl-10906512

ABSTRACT

We analyzed mRNAs that were up- or down-regulated in fibroblasts from Werner syndrome (WS) patients compared with those from normal individuals. The mRNAs from normal and WS cells were first screened by differential display, and those mRNAs that were apparently up- or down-regulated were selected except for mRNAs related to extra-cellular matrix (ECM) proteins that are already known to be up-regulated in WS fibroblasts. Then, the expression levels of these mRNAs were semiquantified by northern blot analysis, and six up-regulated and two down-regulated mRNAs were identified in WS cell lines. Among the six up-regulated mRNAs were three mRNAs that coded TGFbeta-1 and two proteins, their expressions of which were increased by TGFbeta-1. These results together with the fact that TGFbeta-1 up-regulates the expression of ECM proteins strongly suggest that TGFbeta-1 has a key role in accelerated cellular senescence of fibroblasts of WS patients.


Subject(s)
RNA, Messenger/genetics , RNA, Messenger/metabolism , Transforming Growth Factor beta/genetics , Werner Syndrome/genetics , Base Sequence , Blotting, Northern , Case-Control Studies , DNA Primers/genetics , Fibroblasts/metabolism , Gene Expression , Humans , In Vitro Techniques , Werner Syndrome/immunology , Werner Syndrome/metabolism
3.
Genes Cells ; 4(11): 619-25, 1999 Nov.
Article in English | MEDLINE | ID: mdl-10620009

ABSTRACT

BACKGROUND: Bloom's syndrome (BS) is an autosomal recessive disorder causing short stature, immunodeficiency, and an increased risk of cancer. Increased rates of sister chromatid exchange and chromosomal aberration have been observed in cells having defects in the BLM gene. Among five kinds of human RecQ helicases cloned, the mutations in WRN and RecQL4 have been known as the causes of premature ageing. Little is, however, known about the function of BLM helicase in ageing. RESULTS: We show that human BLM, but not WRN can prevent the premature ageing and the increased homologous recombination at the rDNA loci caused by sgs1 mutation. Unexpectedly, the levels of ERCs (extrachromosomal rDNA circles), the products of homologous recombination, formed in 7-generation cells of the wild-type or the sgs1:BLM strain were comparable with those of the sgs1 or the sgs1:WRN age-matched-old cells. CONCLUSION: These results imply that BLM helicase may have an important role in human ageing. In addition, these data suggest that the accumulated ERCs per se may be not the cause of premature ageing in yeast, inconsistent with the model proposed by Sinclair & Guarente. We discuss a new model, which explains how Sgs1 or BLM helicase suppresses premature ageing in yeast.


Subject(s)
Aging, Premature/genetics , Bloom Syndrome/genetics , Bloom Syndrome/metabolism , DNA Helicases/deficiency , Suppression, Genetic/physiology , Aging, Premature/enzymology , DNA Helicases/genetics , DNA Helicases/metabolism , DNA, Fungal/metabolism , DNA, Ribosomal/metabolism , Exodeoxyribonucleases , Fungal Proteins/genetics , Genes, Fungal , Genetic Markers , Humans , Mutation/genetics , Mutation/physiology , RecQ Helicases , Recombination, Genetic/physiology , Saccharomyces cerevisiae/enzymology , Saccharomyces cerevisiae/genetics , Saccharomyces cerevisiae Proteins , Werner Syndrome , Werner Syndrome Helicase
4.
Genomics ; 54(3): 443-52, 1998 Dec 15.
Article in English | MEDLINE | ID: mdl-9878247

ABSTRACT

Two new human DNA helicase genes, RecQ4 and RecQ5, that belong to the RecQ helicase family were cloned and characterized. The addition of these genes increases the total to five helicase genes in the human RecQ family, which includes helicases involved in Bloom and Werner syndromes, the genetic diseases manifesting the distinctive but overlapping clinical phenotypes of immunodeficiency, premature aging, and an enhanced risk of cancer. The RecQ4 helicase is as large as the Bloom (BLM) and Werner (WRN) helicases, and its gene expression profile is organ-specific, resembling that of BLM helicase. In contrast, the RecQ5 helicase has a low molecular weight, similar to the human progenitor RecQ1 helicase, and is expressed in all the organs examined. All five human helicase genes are expressed in cultured K562 leukemia and fibroblast cells. Synchronized K562 cell cultures showed that the genes RecQ4 and BLM, and RecQ1 and WRN, seem to be upregulated at the G1/S and G2/M phases, respectively, of the cell cycle. The biological significance of multiple species of human RecQ helicases, which are apparently nonessential for life but may be related to distinct diseases, is discussed in light of the fact that unicellular organisms, like Escherichia coli and yeast, contain only one species of helicase of this particular family.


Subject(s)
Adenosine Triphosphatases/genetics , DNA Helicases/genetics , DNA Helicases/metabolism , Amino Acid Sequence , Cell Cycle/genetics , Chromosome Mapping , Chromosomes, Human, Pair 17 , Cloning, Molecular , Eukaryotic Cells/physiology , Expressed Sequence Tags , Humans , Molecular Sequence Data , Multigene Family , Phylogeny , RecQ Helicases , Sequence Analysis , Sequence Homology, Amino Acid
5.
Arch Biochem Biophys ; 317(1): 62-8, 1995 Feb 20.
Article in English | MEDLINE | ID: mdl-7872804

ABSTRACT

To study the structure/function relationships of peptidylarginine deiminase (PAD), we constructed an Escherichia coli expression plasmid for mouse uterine PAD. First, segments of a cDNA encoding murine PAD were subcloned into a single plasmid, and the resulting plasmid, pKSPAD1, was inserted into an expression vector, pKK223-3, at the EcoRI and HindIII restriction sites. Since no detectable amount or activity of the PAD was produced by E. coli carrying that plasmid, the 5'-untranslated sequence of the cDNA was replaced with several synthetic DNAs. One of the constructed plasmids, pKKPAD4, which had a unique DNA linker containing a pair of Shine-Dalgarno sequences and a short preceding cistron inserted into the adjacent 5'-region of the coding region, produced a large quantity of mouse PAD as an unfused protein in E. coli. The purified recombinant PAD was indistinguishable from the native enzyme with respect to some structural properties, such as molecular mass, amino- and carboxyl-terminal sequences, and circular dichroism spectra. However, the alpha-amino group of the amino-terminal methionine residue of the recombinant PAD was not acetylated as was that of the native enzyme. Comparison of the recombinant PAD with the natural enzyme did not indicate significant differences in their sensitivity to activation by Ca2+ and in their substrate specificity toward arginine derivatives. The rates of modification of soybean trypsin inhibitor (Kunitz) were also similar for the recombinant and native PADs. These results indicate that the recombinant PAD has biological activities identical to those of the native enzyme and that the N alpha-acetyl group in the native PAD does not appear to have any particular role in the enzyme's catalytic function.


Subject(s)
Escherichia coli/genetics , Hydrolases/genetics , Amino Acid Sequence , Animals , Base Sequence , Chromatography, High Pressure Liquid , Escherichia coli/enzymology , Gene Expression Regulation, Bacterial , Gene Expression Regulation, Enzymologic , Hydrolases/chemistry , Hydrolases/urine , Mice , Molecular Sequence Data , Peptide Mapping , Plasmids/genetics , Protein-Arginine Deiminase Type 4 , Protein-Arginine Deiminases , Recombinant Proteins/chemistry , Recombinant Proteins/genetics
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