Genetic analysis of phenotypic indicators for heat tolerance in crossbred dairy cattle.

Climate change-induced rise in global temperatures has intensified heat stress on dairy cattle and is contributing to the generally observed low milk productivity. Selective breeding aimed at enhancing animals' ability to withstand rising temperatures while maintaining optimal performance is crucial for ensuring future access to dairy products. However, phenotypic indicators of heat tolerance are yet to be effectively factored into the objectives of most selective breeding programs. This study investigated the response of milk production to changing heat load as an indication of heat tolerance and the influence of calving season on this response in multibreed dairy cattle performing in three agroecological zones Kenya. First-parity 7-day average milk yield (65 261 milk records) of 1 739 cows were analyzed. Based on routinely recorded weather data that were accessible online, the Temperature-Humidity Index (THI) was calculated and used as a measure of heat load. THI measurements used represented averages of the same 7-day periods corresponding to each 7-day average milk record. Random regression models, including reaction norm functions, were fitted to derive two resilience indicators: slope of the reaction norm (Slope) and its absolute value (Absolute), reflecting changes in milk yield in response to the varying heat loads (THI 50 and THI 80). The genetic parameters of these indicators were estimated, and their associations with average test-day milk yield were examined. There were no substantial differences in the pattern of milk yield response to heat load between cows calving in dry and wet seasons. Animals with ≤50% Bos taurus genes were the most thermotolerant at extremely high heat load levels. Animals performing in semi-arid environments exhibited the highest heat tolerance capacity. Heritability estimates for these indicators ranged from 0.06 to 0.33 and were mostly significantly different from zero (P < 0.05). Slope at THI 80 had high (0.64-0.71) negative correlations with average daily milk yield, revealing that high-producing cows are more vulnerable to heat stress and vice versa. A high (0.63-0.74) positive correlation was observed between Absolute and average milk yield at THI 80. This implied that low milk-producing cows have a more stable milk production under heat-stress conditions and vice versa. The study demonstrated that the slope of the reaction norms and its absolute value can effectively measure the resilience of crossbred dairy cattle to varying heat load conditions. The implications of these findings are valuable in improving the heat tolerance of livestock species through genetic selection.

Evaluating the impact of heat stress as measured by temperature-humidity index (THI) on test-day milk yield of small holder dairy cattle in a sub-Sahara African climate.

This study evaluates the effect of heat stress on milk production and describes the pattern of response of milk yield to increasing heat load, using temperature-humidity index (THI) on test-day milk records of small holder dairy cattle herds in the sub-Saharan African climate of Tanzania. Climate data obtained from aWhere, an agricultural weather data platform (http://www.awhere.com) was analysed with 14,367 first lactation test day milk records of 3511 dairy cows collected between 2016 and 2019. THI was calculated from daily maximal temperatures and daily minimum humidity. Three sets of analysis were performed. In the first and second analysis, two mixed effect repeatability models were fitted with THI treated as a categorical variable grouped into 5 classes (THI1= [61 - 66], THI2= [67 - 71], THI3= [72 - 78], THI4=[79 - 81], THI5=[82 - 86]), to obtain least squares estimates of THI effect on milk production, and as a continuous variable within THI classes to identify THI thresholds at which milk yield started to decline. In the third analyses, one quadratic polynomial regression (POL) and three regression spline functions namely piecewise linear spline function (PLF), natural splines function (NSF) and cubic splines function (CSF) were fitted to determine the average effect of THI on milk yield in the population and describe the pattern of response of milk yield to increasing head load. The results show that heat stress reduced milk yield by 4.16% to 14.42% across THI groups, with daily milk yield being the highest in THI1 (7.40±0.39 litres) and the lowest in THI4 (6.33±0.32). Regression coefficients within groups showed significant daily milk yield decrease in THI2 (-0.09) and THI3 (-0.06), but not for other THI classes, indicating that cows experienced heat stress between THI values of 67 and 76 and milk loss plateaued afterwards, suggesting that the animals acclimatized to heat stress conditions beyond THI value of 76. At the population level, THI and its squared term were significantly negatively and positively (-0.61, 0.004) associated with milk production, indicating a non-linear relationship between milk yield and THI. The CSF model showed better goodness of fit and predictive ability than other models for predicting future population response of milk yield to heat stress in small holder dairy farms in Tanzania. Herd management strategies and animal husbandry measures are needed in small holder dairy farms in Tanzania to minimize the impact of heat stress on milk yield and income of the farmers.

Genetic evaluation of test-day milk yields from smallholder dairy production systems in Kenya using genomic relationships.

Efforts to improve dairy production in smallholder farming systems of East Africa over the past decade have had limited impact because of the lack of records on performance to guide targeted breeding programs. Estimates of genetic parameters in these systems are lacking. Using data generated through a project ("Germplasm for Dairy Development in East Africa") in Kenya and a genomic relationship matrix from genotypic records, we examined the potential impact of different models handling contemporary groups or herd effects on estimates of genetic parameters using a fixed regression model (FRM) for test-day (TD) milk yields, and the covariance structure for TD milk yield at various stages of lactation for animals using a random regression model (RRM). Models in which herd groups were defined using production levels derived from the data fitted the data better than those in which herds were grouped depending on management practices or were random. Lactation curves obtained for animals under different production categories did not display the typical peak yield characteristic of improved dairy systems in developed countries. Heritability estimates for TD milk yields using the FRM varied greatly with the definition of contemporary herd groups, ranging from 0.05 ± 0.03 to 0.27 ± 0.05 (mean ± standard error). The analysis using the RRM fitted the data better than the FRM. The heritability estimates for specific TD yields obtained by the RRM were higher than those obtained by the FRM. Genetic correlations between TD yields were high and positive for measures within short consecutive intervals but decreased as the intervals between TD increased beyond 60 d and became negative with intervals of more than 5 mo. The magnitude of the genetic correlation estimates among TD records indicates that using TD milk records beyond a 60-d interval as repeated measures of the same trait for genetic evaluation of animals on smallholder farms would not be optimal. Although each individual smallholder farmer retains only a few animals, using the genomic relationship between animals to link the large number of farmers operating under specified environments provides a sufficiently large herd-group for which a breeding program could be developed.

Purebreeding of Red Maasai and crossbreeding with Dorper sheep in different environments in Kenya.

The aim of this article was to study opportunities for improvement of the indigenous and threatened Red Maasai sheep (RM) in Kenya, by comparing purebreeding with crossbreeding with Dorper sheep (D) as a terminal breed, in two different environments (Env. A and a harsher Env. B), assuming different levels of genotype-by-environment interaction (G × E). Breeding goals differed between environments and breeds. Four scenarios of nucleus breeding schemes were stochastically simulated, with the nucleus in Env. A. Overall, results showed an increase in carcass weight produced per ewe by more than 10% over 15 years. Genetic gain in carcass weight was 0.17 genetic SD/year (0.2 kg/year) across scenarios for RM in the less harsh Env. A. For survival and milk yield, the gain was lower (0.04-0.05 genetic SD/year). With stronger G × E, the gain in the commercial tier for RM in the harsher Env. B became increasingly lower. Selection of females also within the commercial tier gave slightly higher genetic gain. The scenario with purebreeding of RM and a subnucleus in Env. B gave the highest total income and quantity of meat. However, quantity of meat in Env. A increased slightly from having crossbreeding with D, whereas that in Env. B decreased. A simple and well-designed nucleus breeding programme would increase the genetic potential of RM. Crossbreeding of RM with D is not recommended for harsh environmental conditions due to the large breed differences expected in that environment.

Live weight, conformation, carcass traits and economic values of ram lambs of Red Maasai and Dorper sheep and their crosses.

Meat production is the most important trait in the breeding objectives of sheep production in East Africa. The aim of this study was to investigate breed differences in live weight, conformation, carcass traits and economic values for meat production among Red Maasai and Dorper sheep and their crosses. In total, 88 ram lambs, which were reared at the ILRI experimental station, Kapiti plains Estate in Central Kenya, were used for the study. The lambs were slaughtered at Kenya Meat Commission (KMC) at about 1 year of age. Prior to slaughter, the lambs were weighed, measured and assessed by experienced evaluators, and at the abattoir carcass traits were recorded. Large breed differences were found for most traits. Dorper lambs were heavier at delivery for slaughter and had better carcass grade but lower dressing percentage and fat levels than Red Maasai. Crossbreds were generally better than the parental breeds. Evaluators were willing to pay more for the Dorper lambs for slaughter although carcass weights later were shown not to be higher than for Red Maasai. Evaluators undervalued Red Maasai lambs by 8-13 % compared to Dorper lambs according to the prices quoted per kilogramme live or carcass weight by KMC. Live weight was better than any other live measure in predicting carcass weight. Due to the overall higher ranking of the crossbred lambs for meat production, Dorper may be useful as a terminal sire breed for crossing with Red Maasai ewes.

Direct and maternal (co)variance components and genetic parameters for growth and reproductive traits in the Boran cattle in Kenya.

Direct and maternal (co)variance components and genetic parameters were estimated for growth and reproductive traits in the Kenya Boran cattle fitting univariate animal models. Data consisted of records on 4502 animals from 81 sires and 1010 dams collected between 1989 and 2004. The average number of progeny per sire was 56. Direct heritability estimates for growth traits were 0.34, 0.12, 0.19, 0.08 and 0.14 for birth weight (BW), weaning weight (WW), 12-month weight (12W), 18-month weight (18W) and 24-month weight (24W), respectively. Maternal heritability increased from 0.14 at weaning to 0.34 at 12 months of age but reduced to 0.11 at 24 months of age. The maternal permanent environmental effect contributed 16%, 4% and 10% of the total phenotypic variance for WW, 12W and 18W, respectively. Direct-maternal genetic correlations were negative ranging from -0.14 to -0.58. The heritability estimates for reproductive traits were 0.04, 0.00, 0.15, 0.00 and 0.00 for age at first calving (AFC), calving interval in the first, second, and third parity, and pooled calving interval. Selection for growth traits should be practiced with caution since this may lead to a reduction in reproduction efficiency, and direct selection for reproductive traits may be hampered by their low heritability.

Analysis of early survival of Holstein-Friesian heifers of diverse sire origins on commercial dairy farms in Kenya.

The use of imported semen within the Holstein-Friesian cattle population in Kenya has contributed to increased milk production per cow, however, information on how this has impacted on functional traits, particularly early life survival and reproductive performance is scarce. This study evaluated age at first calving (AFC), survival to age at first calving, and survival to four years of age using survival analyses techniques, in Holstein-Friesian cattle on four dairy farms in Kenya. The heritability estimate obtained for AFC was 0.15 +/- 0.06 for an average AFC of 1058 days. Animals sired by New Zealand and Australian born bulls had the earliest average AFC (907 days). On average, 25% of all the heifers born were culled prior to attaining a first calving, while 34% were culled prior to four years of age. Though the highest proportion of losses was due to unspecified reasons, the relative risk of being culled was highest when an animal had a specific disease, and the first 60 days of life were the most critical for survival. Daughters of sires from South-Africa and Israel tended to have better survival rates than those sired by bulls originating from other regions. Unfavourable selection towards animals sired by Kenyan born bulls was evident. The economic implications of the high rate of early mortality need to be evaluated in order to assist livestock producers make informed decisions on choice of sires for breeding.

Genetic evaluation of growth of Kenya Boran cattle using random regression models.

Data consisting of 18 884 weight records collected from 1273 Boran cattle from birth to 24 months of age were used to estimate covariance functions and genetic parameters for growth of Boran cattle using random regression (RR) models under a situation of small herd size and inconsistent recording. The RR model fitted quadratic Legendre polynomials of age at recording for additive genetic and permanent environmental effects. Genetic variance increased from birth, reaching an asymptotic value at 455 days and was maximum at 525 days of age after which it gradually dropped. Permanent environmental variance increased throughout the trajectory. Estimates of temporary environmental variance were heterogeneous across ages. Direct heritability and permanent environmental variance as a proportion of phenotypic variance fluctuated greatly during the early ages but later stabilized at intermediate to later ages; the estimates ranged from 0.11 to 0.33 and from 0.18 to 0.83, respectively. Genetic correlation estimates were positive, ranging from 0.10 to unity. The estimates declined with increasing in lag between the age points. Phenotypic correlation pattern was erratic between early ages, negatively low (-0.02) between the extreme data points and moderate to highly positive (>0.50) between intermediate and later points, with prominent spikes along the diagonal. It is concluded that RR models have potential for modelling growth of Boran cattle, notwithstanding conditions of small herd sizes and inconsistent recording.

Economic values for production and functional traits and assessment of their influence on genetic improvement in the Boran cattle in Kenya.

Economic values for production (sale weight in steers, SWs, kg and heifers, SWh, kg; dressing percentage, DP; consumable meat percentage, CMP and milk yield, MY, kg) and functional (cow weight, CoWT, kg; cow survival rate, CoSR, %; postweaning survival rate, PSR, %; feed intake of cows, FIc, heifers, FIh and steers, FIs, kg DM) traits were estimated for six production systems utilizing the Boran breed in Kenya. The influence of the estimated economic values on genetic improvement was also assessed using different selection indices. The six production systems were described according to their sale age, levels of input and final goal, namely, short-fed medium input beef (SMB); long-fed medium input beef (LMB); short-fed high input beef (SHB); long-fed high input beef (LHB); long-fed low input dual purpose (LLD); and long-fed medium input dual purpose (LMD). Two evaluation bases were considered: fixed herd size and fixed pasture input. In the fixed herd-size situation, the economic values for production (except MY in beef systems) and functional traits (except FI in all systems) were positive meaning a unit increase in genetic merit of these traits had greater influence on revenues than costs. As expected, the economic value for MY was negative in the pure beef systems (SMB, LMB, SHB and LHB) and positive in the dual-purpose systems (LLD and LMD). When compared with the economic values estimated in the fixed herd-size situation, in the fixed pasture input situation they were lower for feed intake in the three classes of livestock and other traits related to it in all systems. These traits were CoSR, CoWR, PSR, CoWT, SWh and MY. The economic values for CoWT in LLD and LMD were negative (KSh -11.14 and -15.33 respectively). The economic values did not influence much the direction of the genetic response in each trait in the different production systems. However, the magnitude of the actual gain was dependent on the index applied. The magnitude of the economic values for production and functional traits estimated in this study suggest that genetic improvement of these traits will have a positive effect on profitability of Boran cows kept in dual-purpose systems and when herd size is restricted. In beef systems, genetic improvement of MY will have a negative effect on profitability, especially when restrictions on herd size and feed exists.