Effect of parasitic infection on microplastic ingestion in a native leuciscid hybrid species (Alburnus derjugini x Squalius orientalis) from Kürtün Dam Lake, Türkiye.

Microplastic (MP) pollution is currently one of the most serious environmental issues. MPs were investigated in the Kürtün Dam Lake in healthy individuals of the native leuciscid hybrid (Alburnus derjugini x Squalius orientalis) species and individuals infected with the Ligula intestinalis parasite. Although MP abundance appeared to be higher in non-infected fish (NIF) than in L. intestinalis (L) and infected fish (IF), the MP abundance in IF was higher, because the parasite theoretically belongs to IF. In addition to the observation of MPs in the gastrointestinal tract (GIT) of fish, the diffusion of MPs by parasites settled in the body cavity indicates that MPs are not only present in the GIT. Therefore, predation on existing fish by birds causes MP dispersion. In the present study, the most common MP shape was fiber (100% for NIF and IF, 85.7% for L), the MP color was black (57.1% for IF and L) and orange (50% for NIF), and the polymer type was polyamide (57.1% for IF, 50% for NIF) and polyethylene terephthalate (28.5% for L). These MP compositions led us to believe that textile effluents and aquaculture operations in dam lakes could be sources of pollution. Therefore, this study provides insights for future research to elucidate the connection between MP consumption and parasite infection.

Gene-centromere mapping in meiotic gynogenetic European seabass.

BACKGROUND: Fully isogenic lines in fish can be developed using "mitotic" gynogenesis (suppression of first zygotic mitosis following inactivation of the sperm genome). However, genome-wide verification of the steps in this process has seldom been applied. We used ddRADseq to generate SNP markers in a meiotic gynogenetic family of European seabass (Dicentrarchus labrax): (i) to verify the lack of paternal contribution in a meiotic gynogenetic family; (ii) to generate a gene-centromere map from this family; (iii) to identify telomeric markers that could distinguish mitotic gynogenetics from meiotic gynogenetics, which sometimes arise spontaneously in mitotic gynogenetic families. RESULTS: From a single meiotic gynogenetic family consisting of 79 progeny, 42 million sequencing reads (Illumina, trimmed to 148 bases) resolved 6866 unique RAD-tags. The 340 male-informative SNP markers that were identified confirmed the lack of paternal contribution. A gene-centromere map was constructed based on 804 female-informative SNPs in 24 linkage groups (2n = 48) with a total length of 1251.02 cM (initial LG assignment was based on the seabass genome assembly, dicLab v1). Chromosome arm structure could be clearly discerned from the pattern of heterozygosity in each linkage group in 18 out of 24 LGs: the other six showed anomalies that appeared to be related to issues in the genome assembly. CONCLUSION: Genome-wide screening enabled substantive verification of the production of the gynogenetic family used in this study. The large number of telomeric and subtelomeric markers with high heterozygosity values in the meiotic gynogenetic family indicate that such markers could be used to clearly distinguish between meiotic and mitotic gynogenetics.

Mapping the sex determination locus in the Atlantic halibut (Hippoglossus hippoglossus) using RAD sequencing.

BACKGROUND: Atlantic halibut (Hippoglossus hippoglossus) is a high-value, niche market species for cold-water marine aquaculture. Production of monosex female stocks is desirable in commercial production since females grow faster and mature later than males. Understanding the sex determination mechanism and developing sex-associated markers will shorten the time for the development of monosex female production, thus decreasing the costs of farming. RESULTS: Halibut juveniles were masculinised with 17 α-methyldihydrotestosterone (MDHT) and grown to maturity. Progeny groups from four treated males were reared and sexed. Two of these groups (n = 26 and 70) consisted of only females, while the other two (n = 30 and 71) contained balanced sex ratios (50% and 48% females respectively). DNA from parents and offspring from the two mixed-sex families were used as a template for Restriction-site Associated DNA (RAD) sequencing. The 648 million raw reads produced 90,105 unique RAD-tags. A linkage map was constructed based on 5703 Single Nucleotide Polymorphism (SNP) markers and 7 microsatellites consisting of 24 linkage groups, which corresponds to the number of chromosome pairs in this species. A major sex determining locus was mapped to linkage group 13 in both families. Assays for 10 SNPs with significant association with phenotypic sex were tested in both population data and in 3 additional families. Using a variety of machine-learning algorithms 97% correct classification could be obtained with the 3% of errors being phenotypic males predicted to be females. CONCLUSION: Altogether our findings support the hypothesis that the Atlantic halibut has an XX/XY sex determination system. Assays are described for sex-associated DNA markers developed from the RAD sequencing analysis to fast track progeny testing and implement monosex female halibut production for an immediate improvement in productivity. These should also help to speed up the inclusion of neomales derived from many families to maintain a larger effective population size and ensure long-term improvement through selective breeding.