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1.
Sci Rep ; 13(1): 939, 2023 01 18.
Article in English | MEDLINE | ID: mdl-36653400

ABSTRACT

In general, it is known that extreme climatic conditions such as El Niño and positive Indian Ocean Dipole (IOD+) cause prolonged drought in Indonesia's tropical peatlands so that groundwater levels (GWL) drop and peat is prone to fire. However, 27 years of GWL measurements in Central Kalimantan peat forests show the opposite condition, where the lowest GWL occurs several weeks before El Niño and after IOD+ reaches its peaks. We show that the dropped sea surface temperature anomaly induced by anomalously easterly winds along the southern Java-Sumatra occurs several weeks before the GWL drop to the lowest value. Local rainfall decreased, and GWL dropped sharply by 1.0 to 1.5 m, during the super El Niño events in 1997/98 and 2015, as well as remarkable events of IOD+ in 2019. It is suggested that the tropical peatland ecohydrological system (represented by the GWL), El Niño Southern Oscillation (ENSO), and IOD+ are teleconnected. Hence, monitoring GWL variability of peatland over the IMC is a possibility an alert for extreme climate events associated with El Niño and/or moderate IOD+.


Subject(s)
El Nino-Southern Oscillation , Groundwater , Indonesia , Seasons , Indian Ocean , Soil
2.
Environ Monit Assess ; 193(12): 793, 2021 Nov 12.
Article in English | MEDLINE | ID: mdl-34767121

ABSTRACT

We have pragmatically but accurately evaluated the natural capital of a small northern town, Shimokawa, Hokkaido, Japan. The key industries are forestry, wood manufacturing, and agriculture. From an environmental perspective, Shimokawa was nominated as a Japanese FutureCity. Consequently, the total natural capital value (NCV) of the forest and agricultural lands was calculated to be 1.326 billion USD/year (or 24,161 USD/ha/year) and 44 million USD/year (or 19,692 USD/ha/year), respectively, in 2012. The sum of these NCVs was more than 7 times greater than the yearly gross production of the town, although the forest had a higher NCV because of the larger area (54,862 ha for forest area), compared with 2953 ha for agricultural area. This substantial NCV is mainly generated by sustainable forest management. The timber account showed that the annual tree growth was greater than the annual harvest of trees. The CO2 account derived from a one-year calculation showed that the town served as a CO2 sink at 107,249 t-CO2/year due to the large amount of annual tree growth and CO2 storage in the harvested wood products even if CO2 was emitted from industries and households. The forestry and wood manufacturing industries, as well as agriculture, created socioeconomic effects for the townspeople, ranging from job creation, study tours, and social welfare. This NCV accounting for Shimokawa town ensures the sustainable use of valuable environmental assets and will help other communities recognize their own NCV accounts.


Subject(s)
Conservation of Natural Resources , Environmental Monitoring , Forestry , Forests , Japan , Trees
3.
J Agric Food Chem ; 67(1): 32-42, 2019 Jan 09.
Article in English | MEDLINE | ID: mdl-30525606

ABSTRACT

We tested whether introducing an arbuscular mycorrhizal fungi (AMF)-host plant with a reduced P application rate could maintain soybean seeds' nutrient quality. The dynamic variation of 14 nutrients was analyzed in source and sink organs during the seed-filling stage. The AMF-host and non-AMF-host plants, sunflower and mustard, were grown as preceding crops (PCs). Soybeans, the succeeding crops, were planted with three different phosphorus levels, namely, 0, 50, and 150 kg P2O5 ha-1. The results showed that the AMF-host PC with a reduced P application rate maintained the seed's yield and nutrients quality. During the seed-filling stage, the AMF-host PC with a reduced P application rate increased the uptake of most nutrients compared to the non-AMF-host PC, and improved the remobilization efficiency of all nutrients except Mn, Fe, and Se, compared to the optimal P application rate. These results could help improve the utilization efficiency of P fertilizers and protect soybeans' nutritional value.


Subject(s)
Crop Production/methods , Helianthus/microbiology , Mycorrhizae/physiology , Phosphorus/analysis , Seeds/chemistry , Fertilizers/analysis , Fungi/physiology , Helianthus/growth & development , Mustard Plant/growth & development , Nutritive Value , Phosphorus/metabolism , Plant Roots/growth & development , Plant Roots/microbiology , Quality Control , Seeds/growth & development , Seeds/metabolism , Seeds/microbiology , Glycine max/chemistry , Glycine max/growth & development , Glycine max/metabolism
4.
J Agric Food Chem ; 65(15): 3085-3095, 2017 Apr 19.
Article in English | MEDLINE | ID: mdl-28368588

ABSTRACT

To characterize the dynamic mobilization of heavy metals (HM) in a crop-soil system affected by cattle manure (CM) application, soybean [Glycine max L. Merr. cv. Toyoharuka] crops were exposed in a chronological pot experiment to three CM application rates and sampled at two vegetative stages and two reproductive stages. A sequential extraction procedure for metal fractionation, soil pH, microbial activity, and plant HM uptake was determined. In non-rhizopshere soil, with CM application a liming effect was detected, and increased microbial activity was detected at the reproductive stage. CM application shifted Cd from available state to oxide-bound pool in non-rhizosphere soil; however, shifts in Cd from an oxide-bound pool to the available state were observed in rhizosphere soil. CM application stabilized the available Zn and Pb to oxide-bound Zn and organic-bound Pb in both non-rhizosphere and rhizosphere soils, and the stabilizing degree increased with higher CM application rates. The promoted Zn immobilization in the rhizosphere was due to the liming effects induced by added CM that counteracted the root-induced acidification. On the basis of a stepwise multiple regression analysis, the shift of Cd and Pb fractionation was mainly related to microbial activity. Adding manure inhibited Zn and Pb uptake but promoted Cd uptake by soybean, and a greater influence was detected at the reproductive stage, at which CM application increased the root Cd-absorbing power but did not significantly affect the Zn- and Pb-absorbing powers. In an agricultural context, long-term CM application, even at the recommended rate of 10.13 Mg ha-1, may cause a soybean Zn deficiency and high Pb accumulation in Haplic Fluvisols, although CM is often considered as an environmentally friendly fertilizer.


Subject(s)
Glycine max/metabolism , Manure/analysis , Metals, Heavy/metabolism , Soil Pollutants/metabolism , Agriculture , Animals , Cattle , Fertilizers/analysis , Hydrogen-Ion Concentration , Metals, Heavy/analysis , Plant Roots/growth & development , Plant Roots/metabolism , Rhizosphere , Soil/chemistry , Soil Pollutants/analysis , Glycine max/growth & development , Glycine max/microbiology
5.
Physiol Plant ; 160(1): 11-20, 2017 May.
Article in English | MEDLINE | ID: mdl-27800617

ABSTRACT

High aluminum (Al) concentration in soil solution is the most important factor restricting plant growth in acidic soils. However, various plant species naturally grow in such soils. Generally, they are highly tolerant to Al, but organic acid exudation, the most common Al tolerance mechanism, cannot explain their tolerance. Lower phospholipid and higher sterol proportions in root plasma membrane enhance Al tolerance. Other cellular components, such as cell walls and phenolics, may also be involved in Al tolerance mechanisms. In this study, the relationships between these cellular components and the Al tolerance mechanisms in Melastoma malabathricum and Melaleuca cajuputi, both highly Al-tolerant species growing in strongly acidic soils, were investigated. Both species contained lower proportions of phospholipids and higher proportions of sterols in roots, respectively. Concentrations of phenolics in roots of both species were higher than that of rice; their phenolics could form chelates with Al. In these species, phenolic concentrations and composition were the same irrespective of the presence or absence of Al in the medium, suggesting that a higher concentration of phenolics is not a physiological response to Al but a constitutive characteristic. These characteristics of cellular components in roots may be cooperatively involved in their high Al tolerance.


Subject(s)
Aluminum/toxicity , Melastomataceae/drug effects , Melastomataceae/metabolism , Phenols/metabolism , Plant Roots/drug effects , Plant Roots/metabolism , Trees/drug effects , Trees/metabolism
7.
J Agric Food Chem ; 64(43): 8084-8094, 2016 Nov 02.
Article in English | MEDLINE | ID: mdl-27726362

ABSTRACT

In this study, we determined the capacity of soybean (Glycine max L. Merr. cv. Hoyoharuka) and sorghum (Sorghum bicolor L. Moench. cv. Hybrid Sorgo) to utilize different forms of nitrogen (N) in a rhizobox system. Seedlings were grown for 35 days without N or with 130 mg N kg-1 soil as ammonium sulfate or farmyard cattle manure. The soil fractions at different distances from the root were sliced millimeter by millimeter in the rhizobox system. We assessed the distribution of different forms of N and microbial metabolism in different soil fractions in the rhizosphere. There are no treatment-dependent changes in biomass production in the roots and shoots of soybeans, however, the ammonium and manure treatment yielded 1.30 and 1.40 times higher shoot biomass of sorghum than the control. Moreover, the depletion of inorganic N and total amino acids (TAA) in the rhizosphere was largely undetectable at various distances from the soybean roots regardless of the treatments employed. The addition of ammonium sulfate resulted in a decrease in the nitrate concentration gradient as the distance decreased from the sorghum roots. The addition of manure to the soil increased the N content in the sorghum shoots, 1.57 times higher than the control; this increase was negatively correlated with the concentrations of TAA in the soil of the root compartment. In addition, the application of manure simultaneously induced TAA depletion (i.e., the TAA concentration in root compartment was 1.48 times higher than that in bulk soil) and greater microbial activity and diversity in the sorghum rhizosphere, where higher microbial consumption of asparagine, glutamic acid, and phenylalanine were also observed near the roots. Our results are first to present the evidence that sorghum may possess a high capacity for taking up amino acids as a consequence of organic matter application, and microbial metabolism.


Subject(s)
Glycine max/growth & development , Manure , Nitrogen/metabolism , Rhizosphere , Sorghum/growth & development , Amino Acids/analysis , Amino Acids/metabolism , Ammonium Sulfate , Animals , Cattle , Fertilizers , Japan , Microbial Consortia/physiology , Nitrogen/analysis , Sorghum/metabolism , Glycine max/metabolism
8.
PLoS One ; 11(8): e0160273, 2016.
Article in English | MEDLINE | ID: mdl-27478901

ABSTRACT

Soil contains various essential and nonessential elements, all of which can be absorbed by plants. Plant ionomics is the study of the accumulation of these elements (the ionome) in plants. The ionomic profile of a plant is affected by various factors, including species, variety, organ, and environment. In this study, we cultivated various vegetable crop species and cultivars under the same field conditions and analyzed the level of accumulation of each element in the edible and nonedible parts using ionomic techniques. The concentration of each element in the edible parts differed between species, which could be partly explained by differences in the types of edible organs (root, leaf, seed, and fruit). For example, the calcium concentration was lower in seeds and fruit than in other organs because of the higher dependency of calcium accumulation on xylem transfer. The concentration of several essential microelements and nonessential elements in the edible parts also varied greatly between cultivars of the same species, knowledge of which will help in the breeding of vegetables that are biofortified or contain lower concentrations of toxic elements. Comparison of the ionomes of the fruit and leaves of tomato (Solanum lycopersicum) and eggplant (S. melongena) indicated that cadmium and boron had higher levels of accumulation in eggplant fruit, likely because of their effective transport in the phloem. We also found that homologous elements that have been reported to share the same uptake/transport system often showed significant correlation only in a few families and that the slopes of these relationships differed between families. Therefore, these differences in the characteristics of mineral accumulation are likely to affect the ionomic profiles of different families.


Subject(s)
Crops, Agricultural , Soil Pollutants/chemistry , Solanum lycopersicum/chemistry , Solanum melongena/chemistry , Boron/analysis , Cadmium/analysis , Food Safety , Fruit/chemistry , Fruit/metabolism , Solanum lycopersicum/growth & development , Solanum lycopersicum/metabolism , Mass Spectrometry , Plant Leaves/chemistry , Plant Leaves/metabolism , Plant Roots/chemistry , Plant Roots/metabolism , Principal Component Analysis , Soil Pollutants/analysis , Solanum melongena/growth & development , Solanum melongena/metabolism
9.
Springerplus ; 4: 781, 2015.
Article in English | MEDLINE | ID: mdl-26702370

ABSTRACT

Ionomics is the study of elemental accumulation in living organisms using high-throughput elemental profiling. In the present study, we examined the ionomic responses to nutrient deficiency in maize grown in the field in long-term fertilizer trials. Furthermore, the available elements in the field soils were analyzed to investigate their changes under long-term fertilizer treatment and the ionomic relationships between plant and soil. Maize was cultivated in a field with the following five long-term fertilizer treatments: complete fertilization, fertilization without nitrogen, without phosphorus, without potassium, and no fertilization. Concentrations of 22 elements in leaves at an early flowering stage and in soils after harvest were determined. The fertilizer treatments changed the availabilities of many elements in soils. For example, available cesium was decreased by 39 % and increased by 126 % by fertilizations without nitrogen and potassium, respectively. Effects of treatments on the ionome in leaves were evaluated using the translocation ratio (the concentration in leaves relative to the available concentration in soils) for each element. Nitrogen deficiency specifically increased the uptake ability of molybdenum, which might induce the enhancement of nitrogen assimilation and/or endophytic nitrogen fixation in plant. Potassium deficiency drastically enhanced the uptake ability of various cationic elements. These elements might act as alternatives to K in osmoregulation and counterion of organic/inorganic anions. Two major groups of elements were detected by multivariate analyses of plant ionome. Elements in the same group may be linked more or less in uptake and/or translocation systems. No significant correlation between plant and soil was found in concentrations of many elements, even though various soil extraction methods were applied, implying that the interactions between the target and other elements in soil must be considered when analyzing mineral dynamics between plant and soil.

10.
J Agric Food Chem ; 63(8): 2355-63, 2015 Mar 04.
Article in English | MEDLINE | ID: mdl-25660261

ABSTRACT

Aiming at clarifying the interactions between Cs, Sr, and other mineral elements in the genus Amaranthus, this study adopted 33 different varieties of Amaranthus and investigated the concentrations of 23 mineral elements in shoots grown in the fields of Iino in Fukushima prefecture. Significant varietal effects were detected for all elements except Se, and degree of interspecies variation was highly element dependent. Among 23 elements, amaranths were less sensitive to the accumulation of Cs and Sr than most other mineral elements to the species level. There are six elements showing significant correlation with Cs, positive correlations between As, Rb, Al, Fe, Ni, and Cs, and negative correlation between Ba and Cs. Significant correlations between Ca, Mg, Mn, Zn, B, Ba, Cd, and Sr were detected, and all of the coefficients were positive. Cs and Sr did not present significant correlation, but they were both significantly correlated with Ba. By principal component analysis (PCA), the first and second principal components (PC1 and PC2) accounted for 23.2 and 20.3% of the total variance and associated with Cs and Sr, respectively. Both of the two species took up more Cs by promoting the influx of elements positively correlated with Cs into shoot, but at the same time, Amaranthus hypochondriacus (L.) Mapes 847 decreased the K and Ba uptake and Amaranthus powellii (S. Wats) subsp. Powellii inhibited the accumulation of Rb, Sr, and significantly correlated elements of Sr in shoot. This study is the first to pave the way for comprehension on ionome in amaranth shoot at the variety level. The results of this research provide the ionomic basis for implementing countermeasures in the field against the translocation of Cs (and potentially Sr) toward crops and food.


Subject(s)
Amaranthus/chemistry , Amaranthus/metabolism , Cesium/metabolism , Strontium/metabolism , Trace Elements/metabolism , Amaranthus/growth & development , Cesium/analysis , Plant Shoots/chemistry , Plant Shoots/metabolism , Strontium/analysis , Trace Elements/analysis
11.
Glob Chang Biol ; 21(5): 1914-27, 2015 May.
Article in English | MEDLINE | ID: mdl-24912043

ABSTRACT

In Southeast Asia, peatland is widely distributed and has accumulated a massive amount of soil carbon, coexisting with peat swamp forest (PSF). The peatland, however, has been rapidly degraded by deforestation, fires, and drainage for the last two decades. Such disturbances change hydrological conditions, typically groundwater level (GWL), and accelerate oxidative peat decomposition. Evapotranspiration (ET) is a major determinant of GWL, whereas information on the ET of PSF is limited. Therefore, we measured ET using the eddy covariance technique for 4-6 years between 2002 and 2009, including El Niño and La Niña events, at three sites in Central Kalimantan, Indonesia. The sites were different in disturbance degree: a PSF with little drainage (UF), a heavily drained PSF (DF), and a drained burnt ex-PSF (DB); GWL was significantly lowered at DF, especially in the dry season. The ET showed a clear seasonal variation with a peak in the mid-dry season and a large decrease in the late dry season, mainly following seasonal variation in net radiation (Rn ). The Rn drastically decreased with dense smoke from peat fires in the late dry season. Annual ET forced to close energy balance for 4 years was 1636 ± 53, 1553 ± 117, and 1374 ± 75 mm yr(-1) (mean ± 1 standard deviation), respectively, at UF, DF, and DB. The undrained PSF (UF) had high and rather stable annual ET, independently of El Niño and La Niña events, in comparison with other tropical rainforests. The minimum monthly-mean GWL explained 80% of interannual variation in ET for the forest sites (UF and DF); the positive relationship between ET and GWL indicates that drainage by a canal decreased ET at DF through lowering GWL. In addition, ET was decreased by 16% at DB in comparison with UF chiefly because of vegetation loss through fires.


Subject(s)
Groundwater/chemistry , Plant Transpiration/physiology , Sphagnopsida/physiology , Wetlands , Indonesia , Seasons , Temperature , Tropical Climate
12.
World J Microbiol Biotechnol ; 30(8): 2263-71, 2014 Aug.
Article in English | MEDLINE | ID: mdl-24699808

ABSTRACT

The white-rot fungi Irpex lacteus KB-1.1 and Lentinus tigrinus LP-7 have been shown in previous studies to have high biobleaching activity in vivo. The aim of this study was to investigate the activities and stabilities of extracellular enzymes, prepared from I. lacteus and L. tigrinus culture grown in three types of economical media of agricultural and forestry wastes, for biobleaching of Acacia oxygen-delignified kraft pulp using kappa number reduction as an indicator of delignification. After 3 days of incubation, the extracellular enzymes preparations from I. lacteus and L. tigrinus cultures in media of Acacia mangium wood powder supplemented with rice bran and addition 1 % glucose (WRBG), resulted in significant decrease of 4.4 and 6.7 %, respectively. A slightly higher kappa number reduction (7.4 %) was achieved with the combine extracellular enzymes from I. lacteus and L. tigrinus. One of the strategies for reducing the cost of enzyme production for treatment processes in the pulp and paper industry is the utilization of agricultural and forestry waste. Thus, WRBG has potential as a culture medium for producing stable lignolytic enzymes simply and economically.


Subject(s)
Acacia/chemistry , Culture Media/chemistry , Fungal Proteins/biosynthesis , Lignin/metabolism , Polyporales/enzymology , Biodegradation, Environmental , Culture Media/economics , Enzyme Stability , Oxygen , Paper , Polyporales/classification , Waste Products , Wood
13.
Plant Cell Environ ; 37(1): 45-53, 2014 Jan.
Article in English | MEDLINE | ID: mdl-23611758

ABSTRACT

Low-molecular-weight thiol (LMWT) synthesis has been reported to be directly induced by arsenic (As) in Pteris vittata, an As hyperaccumulator. Sulphur (S) is a critical component of LMWTs. Here, the effect of As treatment on the uptake and distribution of S in P. vittata was investigated. In P. vittata grown under low S conditions, the presence of As in the growth medium enhanced the uptake of SO4(2-), which was used for LMWT synthesis in fronds. In contrast, As application did not affect SO4(2-) uptake in Nephrolepis exaltata, an As non-hyperaccumulator. Moreover, the isotope microscope system revealed that S absorbed with As accumulated locally in a vacuole-like organelle in epidermal cells, whereas S absorbed alone was distributed uniformly. These results suggest that S is involved in As transport and/or accumulation in P. vittata. X-ray absorption near-edge structure analysis revealed that the major As species in the fronds and roots of P. vittata were inorganic As(III) and As(V), respectively, and that As-LMWT complexes occurred as a minor species. Consequently, in case of As accumulation in P. vittata, S possibly acts as a temporary ligand for As in the form of LMWTs in intercellular and/or intracellular transport (e.g. vacuolar sequestration).


Subject(s)
Arsenic/pharmacology , Pteris/drug effects , Sulfur/metabolism , Biological Transport , Plant Roots/drug effects , Plant Roots/growth & development , Plant Roots/metabolism , Pteris/growth & development , Pteris/metabolism , Soil Pollutants/metabolism , Sulfhydryl Compounds/metabolism , Sulfur Isotopes/analysis
14.
Glob Chang Biol ; 20(2): 555-65, 2014 Feb.
Article in English | MEDLINE | ID: mdl-23775585

ABSTRACT

In Southeast Asia, a huge amount of peat has accumulated under swamp forests over millennia. Fires have been widely used for land clearing after timber extraction, thus land conversion and land management with logging and drainage are strongly associated with fire activity. During recent El Niño years, tropical peatlands have been severely fire-affected and peatland fires enlarged. To investigate the impact of peat fires on the regional and global carbon balances, it is crucial to assess not only direct carbon emissions through peat combustion but also oxidative peat decomposition after fires. However, there is little information on the carbon dynamics of tropical peat damaged by fires. Therefore, we continuously measured soil CO2 efflux [peat respiration (RP)] through oxidative peat decomposition using six automated chambers on a burnt peat area, from which about 0.7 m of the upper peat had been lost during two fires, in Central Kalimantan, Indonesia. The RP showed a clear seasonal variation with higher values in the dry season. The RP increased logarithmically as groundwater level (GWL) lowered. Temperature sensitivity or Q10 of RP decreased as GWL lowered, mainly because the vertical distribution of RP would shift downward with the expansion of an unsaturated soil zone. Although soil temperature at the burnt open area was higher than that in a near peat swamp forest, model simulation suggests that the effect of temperature rise on RP is small. Annual gap-filled RP was 382 ± 82 (the mean ± 1 SD of six chambers) and 362 ± 74 gC m(-2)  yr(-1) during 2004-2005 and during 2005-2006 years, respectively. Simulated RP showed a significant negative relationship with GWL on an annual basis, which suggests that every GWL lowering by 0.1 m causes additional RP of 89 gC m(-2)  yr(-1) . The RP accounted for 21-24% of ecosystem respiration on an annual basis.


Subject(s)
Carbon Dioxide/metabolism , Fires , Soil/chemistry , Borneo , Indonesia , Oxidation-Reduction , Seasons , Wetlands
15.
J Plant Physiol ; 171(2): 9-15, 2014 Jan 15.
Article in English | MEDLINE | ID: mdl-24331414

ABSTRACT

The negative charge at the root surface is mainly derived from the phosphate group of phospholipids in plasma membranes (PMs) and the carboxyl group of pectins in cell walls, which are usually neutralized by calcium (Ca) ions contributing to maintain the root integrity. The major toxic effect of aluminum (Al) in plants is the inhibition of root elongation due to Al binding tightly to these negative sites in exchange for Ca. Because phospholipid and pectin concentrations decrease in roots of some plant species under phosphorus (P)-limiting conditions, we hypothesized that rice (Oryza sativa L.) seedlings grown under P-limiting conditions would demonstrate enhanced Al tolerance because of their fewer sites on their roots. For pretreatment, rice seedlings were grown in a culture solution with (+P) or without (-P) P. Thereafter, the seedlings were transferred to a solution with or without Al, and the lipid, pectin, hemicellulose, and mineral concentrations as well as Al tolerance were then determined. Furthermore, the low-Ca tolerance of P-pretreated seedlings was investigated under different pH conditions. The concentrations of phospholipids and pectins in the roots of rice receiving -P pretreatment were lower than those receiving +P pretreatment. As expected, seedlings receiving the -P pretreatment showed enhanced Al tolerance, accompanied by the decrease in Al accumulation in their roots and shoots. This low P-induced enhanced Al tolerance was not explained by enhanced antioxidant activities or organic acid secretion from roots but by the decrease in phospholipid and pectin concentrations in the roots. In addition, low-Ca tolerance of the roots was enhanced by the -P pretreatment under low pH conditions. This low P-induced enhancement of low-Ca tolerance may be related to the lower Ca requirement to maintain PM and cell wall structures in roots of rice with fewer phospholipids and pectins.


Subject(s)
Aluminum/metabolism , Cell Membrane/metabolism , Cell Wall/metabolism , Oryza/metabolism , Phosphorus/metabolism , Calcium/metabolism
16.
J Proteome Res ; 12(11): 4748-56, 2013 Nov 01.
Article in English | MEDLINE | ID: mdl-24083427

ABSTRACT

Plant roots are complicated organs that absorb water and nutrients from the soil. Roots also play an essential role in protecting plants from attack by soil pathogens and develop a beneficial role with some soil microorganisms. Plant-derived rhizosphere proteins (e.g., root secretory proteins and root surface binding proteins) are considered to play important roles in developing mutual relationships in the rhizosphere. In the rhizosphere, where plant roots meet the surrounding environment, it has been suggested that root secretory protein and root surface binding protein are important factors. Furthermore, it is not known how the physiological status of the plant affects the profile of these proteins. In this study, rice plants were grown aseptically, with or without phosphorus nutrition, and proteins were obtained from root bathing solution (designated as root secretory proteins) and obtained using 0.2 M CaCl2 solution (designated as root surface binding proteins). The total number of identified proteins in the root bathing solution was 458, and the number of root surface binding proteins was 256. More than half of the proteins were observed in both fractions. Most of the proteins were categorized as either having signal peptides or no membrane transport helix sites. The functional categorization suggested that most of the proteins seemed to have secretory pathways and were involved in defense/disease-related functions. These characteristics seem to be unique to rhizosphere proteins, and the latter might be part of the plants strategy to defeat pathogens in the soil. The low phosphorus treatment significantly increased the number of pathogenesis-related proteins in the root secretory proteins, whereas the change was small in the case of the root surface binding proteins. The results suggested that the roots are actively and selectively secreting protein into the rhizosphere.


Subject(s)
Gene Expression Regulation, Plant/genetics , Oryza/genetics , Phosphorus/pharmacology , Plant Proteins/metabolism , Plant Roots/genetics , Proteomics/methods , Rhizosphere , Chromatography, Liquid , Culture Media/chemistry , Gene Expression Regulation, Plant/drug effects , Oryza/drug effects , Oryza/metabolism , Plant Proteins/genetics , Plant Roots/drug effects , Tandem Mass Spectrometry
17.
J Agric Food Chem ; 61(5): 1009-16, 2013 Feb 06.
Article in English | MEDLINE | ID: mdl-23244647

ABSTRACT

Organic matter amendment is an essential agricultural protocol to improve soil function and carbon sequestration. However, the effect of organic matter amendments on crop quality has not been well-defined. This study applied gas chromatography-mass spectrometry to investigate the metabolite profiling of mizuna ( Brassica rapa L. var. Nipponsinica) with different organic matter amendments with respect to quality and quantity. Principal component analysis showed that 33.4, 15.6, and 6.6% of the total variance was attributable to the plant N concentration, fast-release organic fertilizer (fish cake), chicken droppings), and rapeseed cake), and manure application (fresh and dried), respectively. The peak areas of 18 and 15 compounds were significantly altered under organic fertilizer and manure amendment, respectively, compared with pure chemical fertilizer amendment. The compounds altered with manure amendment were similar to those reported in previous studies using other species. This study is the first to show clear metabolic alterations in plants through the amendment of fast-release organic fertilizer. Mizuna is a unique plant species that responds to both organic fertilizer and manure. These observations are useful to clarify the effect of organic matter amendment and quality control in farming systems using organic matter.


Subject(s)
Brassica rapa/metabolism , Fertilizers/analysis , Metabolome , Brassica rapa/genetics , Crops, Agricultural/genetics , Crops, Agricultural/metabolism , Gas Chromatography-Mass Spectrometry , Manure/analysis , Nitrogen/analysis , Phosphorus/analysis , Potassium/analysis , Principal Component Analysis , Soil/chemistry
18.
J Agric Food Chem ; 60(38): 9543-52, 2012 Sep 26.
Article in English | MEDLINE | ID: mdl-22950648

ABSTRACT

Two field experiments were conducted to investigate the effects of previous cultivation of an arbuscular mycorrhizal (AM) host plant and manure application on the concentration of 19 mineral elements in soybean ( Glycine max L. Merr. cv. Tsurumusume) seeds. Each experiment ran for two years (experiment 1 took place in 2007-2008, and experiment 2 took place in 2008-2009) with a split plot design. Soybeans were cultivated after growing either an AM host plant (maize, Zea mays L. cv. New dental) or a non-AM host plant (buckwheat, Fagopyrum esculentum Moench. cv. Kitawase-soba) in the first year in the main plots, with manure application (0 and 20 t/ha) during the soybean season in split plots from both main plots. On the basis of the two experiments, manure application significantly increased the available potassium (K) and decreased the available iron (Fe) and cesium (Cs) in the soil. However, higher concentrations of cadmium (Cd) and barium (Ba) and lower concentrations of Cs in the seed were induced by the application of manure. Cd levels in the seed were decreased by prior cultivation with the AM host plant. The present study showed that the identity of the prior crop and manure application changed the mineral contents of the soybean seed and suggests a connection between environmental factors and food safety.


Subject(s)
Glycine max/physiology , Manure , Mycorrhizae , Seeds/chemistry , Barium/pharmacokinetics , Cadmium/pharmacokinetics , Calcium/pharmacokinetics , Cesium/pharmacokinetics , Crops, Agricultural , Fagopyrum , Fertilizers , Iron/pharmacokinetics , Potassium/pharmacokinetics , Seeds/metabolism , Soil , Glycine max/microbiology , Zea mays
19.
J Sci Food Agric ; 91(1): 85-93, 2011 Jan 15.
Article in English | MEDLINE | ID: mdl-20812384

ABSTRACT

BACKGROUND: Changes in saccharide, amino acid and S-methylmethionine (SMM) concentrations and enzyme activities during the malting of barley grown with different nitrogen (N) and sulfur (S) supplementation were investigated in order to clarify their relationship with N and S fertiliser levels. RESULTS: Concentrations of N and S in barley grain were significantly increased by the addition of N to the culture soil. Application of N decreased the starch concentration in grain. On the other hand, higher N fertilisation increased the ß-glucan concentration in grain and malt, thus decreasing the accessibility of ß-glucanase to its substrates. Proteolytic enzyme activity was significantly higher in the absence (-N treatment) than in the presence (+N treatment) of N fertiliser, making the concentration of the majority of amino acids in malt slightly higher in the - N treatment. SMM was synthesised in grain after imbibition, and application of N increased the SMM content in malt. CONCLUSION: Although SMM can be controlled to a certain extent during kilning, a balanced supply of N and S during cultivation can also be helpful for the production of malt with lower SMM concentration. Adequate soil management is desirable to maintain the balance between good agronomic performance and high malt quality.


Subject(s)
Amino Acids/biosynthesis , Carbohydrates/biosynthesis , Edible Grain/metabolism , Hordeum/metabolism , Nitrogen/metabolism , Sulfur/metabolism , Vitamin U/biosynthesis , Cellulases/metabolism , Fertilizers , Food Handling/methods , Peptide Hydrolases/metabolism , beta-Glucans/metabolism
20.
Environ Pollut ; 158(12): 3663-9, 2010 Dec.
Article in English | MEDLINE | ID: mdl-20822837

ABSTRACT

The roles of low-molecular-weight thiols (LMWTs), such as glutathione and phytochelatins, in arsenic (As) tolerance and hyperaccumulation in Pteris vittata an As-hyperaccumulator fern remain to be better understood. This study aimed to thoroughly characterize LMWT synthesis in P. vittata to understand the roles played by LMWTs in As tolerance and hyperaccumulation. LMWT synthesis in P. vittata was induced directly by As, and not by As-mediated oxidative stress. Expression of PvECS2, one of the putative genes of γ-glutamylcysteine synthetase (γECS), increases in P. vittata shoots at 48h after the onset of As exposure, almost corresponding to the increase in the concentrations of γ-glutamylcysteine and glutathione. Furthermore, localization of As showed similar trends to those of LMWTs in fronds at both whole-frond and cellular levels. This study thus indicates the specific contribution of LMWTs to As tolerance in P. vittata. γECS may be responsible for the As-induced enhancement of LMWT synthesis.


Subject(s)
Arsenic/adverse effects , Oxidative Stress , Pteris/metabolism , Soil Pollutants/adverse effects , Sulfhydryl Compounds/metabolism , Arsenic/chemistry , Glutamate-Cysteine Ligase/metabolism , Glutathione/metabolism , Molecular Weight , Plant Roots/metabolism , Soil Pollutants/chemistry
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