Potential for automatic detection of calving in beef cows grazing on rangelands from Global Navigate Satellite System collar data.

Dystocia is one of the main causes of calf death around calving. In addition, peripartum deaths may occur due to other factors, such as weather or predators, especially in the case of grazing animals. Precision Livestock Farming (PLF) tools aimed at the automatic detection of calving may be useful for farmers, allowing cow assistance in case of dystocia or checking the condition of the cow-calf pair after calving. Such PLF systems are commercially available for dairy cows, but these tools are not suitable for rangelands, mainly due to power and connectivity constraints. Thus, since most commercial PLF tools for rangelands are based on Global Navigate Satellite System (GNSS) technology, the objective of this study was to design and evaluate several indicators built from data gathered with GNSS collars to characterise their potential for the detection of calving on rangelands. Location data from 57 cows, 42 of which calved during the study, were curated and analysed following a standardised procedure. Several indicators were calculated using two different strategies. The first approach consisted of having indicators that could be computed using the data of a single GNSS collar (cow indicators). The second strategy involved the use of data from several animals (herd indicators), which requires more animals to be monitored, but may allow the characterisation of social behaviour. Several indicators, such as the length of the daily trajectory or the sinuosity of cow path, showed significant differences between the pre- and postpartum periods, but no clear differences between calving day and previous days. Herd indicators, such as the distance to herd centroid or to the nearest peer were superior in terms of the detection of calving day, as cows showed isolation behaviour from 24 hours before calving. Relative indicators, i.e., the value of cow or herd indicators for the calving cow in relation to the average value of the same indicators for its herdmates, provided additional information on cow behaviour. For instance, according to the relative indicator for the change in daily trajectory, pregnant cows had a differential exploratory behaviour up to 14 days before calving. In conclusion, data from commercial GNSS collars proved to be useful for the computation of several indicators related to the occurrence of calving on rangelands. Some of those indicators showed changes from baseline values on the day before calving, which could serve to predict the onset of parturition.

Non-destructive Near Infrared Spectroscopy for the labelling of frozen Iberian pork loins.

Iberian pigs fed on acorns and pasture were slaughtered from January until March of 2018 and 2019. The meat from those Iberian pigs is a seasonal food that only can be found fresh, at the marketplace, during a limit period of the year. Selling frozen-thawed meat is a legal practice, but consumers must be informed about it on the product label. However, to declare as fresh meat, meat previously frozen, is one of the most frequent meat frauds. The present study compares the performance of two rather different Near Infrared Spectroscopy instruments, based on Fourier Transform and Linear Variable Filter technologies, for the in-situ detection of fresh and frozen-thawed acorns-fed Iberian pig loins using Partial Least Discriminant Analysis (PLS-DA). The performance of the models developed for both instruments offered a very high discriminant ability. Furthermore, the models showed consistent results and interpretation when were evaluated with several scalars and graphical methods.

Fourier transform near-infrared spectroscopy coupled to a long fibre optic head for the quality control of IBERIAN pork loins: Intact versus minced.

Conventional chemical analyses of meat products are time-consuming, expensive and destructive. The advantages of NIR spectroscopy are its speed, portability, suitability for both at-line and on-line analysis, low cost and the possibility of simultaneously measuring many different parameters in a large number of samples. The purpose of this study was to develop and validate calibrations for the prediction of moisture, protein and fat in Iberian pig pork loins using an FT-NIR instrument coupled to a 5-m fibre optic sensor head. The best equations obtained for intact loin in both modes of analysis (full and optimal spectral range) displayed Standard Error of Cross-Validation (RMSECV) of 1.06% and 1.09% and Determination Coefficient of Cross-Validation (RCV2) of 0.69 and 0.77 for fat: RMSECV of 0.87% and 0.77% and RCV2 of 0.67 and 0.73 for moisture; while for protein, the RMSECV values were 0.51% and 0.49% and the RCV2 values were 0.66 and 0.70.

Data pre-processing to improve the mining of large feed databases.

The information stored in animal feed databases is highly variable, in terms of both provenance and quality; therefore, data pre-processing is essential to ensure reliable results. Yet, pre-processing at best tends to be unsystematic; at worst, it may even be wholly ignored. This paper sought to develop a systematic approach to the various stages involved in pre-processing to improve feed database outputs. The database used contained analytical and nutritional data on roughly 20 000 alfalfa samples. A range of techniques were examined for integrating data from different sources, for detecting duplicates and, particularly, for detecting outliers. Special attention was paid to the comparison of univariate and multivariate solutions. Major issues relating to the heterogeneous nature of data contained in this database were explored, the observed outliers were characterized and ad hoc routines were designed for error control. Finally, a heuristic diagram was designed to systematize the various aspects involved in the detection and management of outliers and errors.

Handling of missing data to improve the mining of large feed databases.

Feed databases often have missing data. Despite their potentially major effect on data analysis (e.g., as a source of biased results and loss of statistical power), database managers and nutrition researchers have paid little attention to missing data. This study evaluated various methods of handling missing data using mining outputs from a database containing data on chemical composition and nutritive value for 18,864 alfalfa samples. A complete reference dataset was obtained comprising the 2,303 cases with no missing data for the attributes CP, crude fiber (CF), NDF, ADF and ADL. This dataset was used to simulate 2 types of missing data (at random and not at random), each with 2 loss intensities (33 and 66%), thus yielding a total of 4 incomplete datasets. Missing data from these datasets were handled using 2 deletion methods and 4 imputation methods, and outputs in terms of the identification and typing of alfalfa (using ANOVA and descriptive statistics) and of correlations between attributes (using regressions) were compared with outputs from the complete dataset. Imputation methods, particularly model-based versions, were found to perform better than deletion methods in terms of maximizing information use and minimizing bias although the extent of differences between methods depended on the type of missing data. The best approximation to the uncertainty value was provided by multiple imputation methods. It was concluded that the choice of the most suitable method for handling missing data depended both on the type of missing data and on the purpose of data analysis.

Building a metadata framework for sharing feed information in Spain.

Information about the nutritional aspects and uses of feed is of widespread interest, hence systematic efforts of laboratories to obtain it. The way this information is currently being handled leaves something to be desired, underscoring the need to use computerized systems and statistical techniques that allow the management of large volumes of heterogeneous information. This project seeks to develop a structure that will facilitate the exchange and exploitation of information on feeds produced in Spain. To this end, metadata and data mining techniques have been adopted by the Feed Information Service at the University of Cordoba. The structure has been designed to work on the basis of a server-client architecture, in which information is stored on local software (Califa) by its own creators so that it can subsequently be incorporated into a database server where it can be accessed online. Various aspects of the structure are described in this paper: organization (participants and data shared), format (physical features), logistics (data description), quality (reliability of information), legality (correct use of data), and financing (revenue and expenditure). An indication is given of the amount of information accumulated to date, now exceeding 200,000 numerical data and associated metadata, arranged in several thematic databases. The activities carried out highlight the heterogeneous nature of the information produced, as well as the large number of errors and ambiguities that slip through the normal filters and reach the end-user of the data.

Optimization of discriminant partial least squares regression models for the detection of animal by-product meals in compound feedingstuffs by near-infrared spectroscopy.

This paper evaluates two multivariate strategies for classifying near-infrared (NIR) spectroscopic data for the detection of animal by-product meals (henceforth generically termed AbP) as an ingredient in compound feedingstuffs. Classification models were developed to discriminate between the presence and absence of animal-origin meals in compound feeds using two forms of discriminant partial least squares (PLS) regression: the algorithms PLS1 and PLS2. The training set comprised 433 commercial feeds, of which 148 contained AbP and the other 285 were stated to be AbP-free. Since the initial set contained unequal numbers of each class, the effect of this imbalance was analyzed by applying the same algorithms to a training set containing equal numbers of AbP-free and AbP-containing samples. The best classification model (97.42% of samples correctly classified), obtained with PLS2, that showed less sensitivity to the use of class-unbalanced sets, was externally validated using a set of 18 samples (10 AbP-containing and 8 AbP-free); all samples were correctly classified, except for one AbP-free sample that was classified as containing AbP (false positive). The results suggest that the application of PLS discriminant analysis to NIR spectroscopic data enables detection of AbP, a feed ingredient banned since the bovine spongiform encephalopathy (BSE) crisis; this confirms the value of NIRS qualitative analysis for product authentication purposes.