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1.
Phys Chem Chem Phys ; 23(14): 8800-8808, 2021 Apr 14.
Article in English | MEDLINE | ID: mdl-33876039

ABSTRACT

Using density functional theory (DFT) calculations, we examined the effects of substitutional doping on the formation of Cu vacancies in Cu2O(111). Upon replacing coordinatively unsaturated O with other elements (N, F, P, S, and Cl) and calculating the formation energies, we found that compared to the undoped surface, Cu vacancy formation is most favorable in the F-doped surface and least favorable in the N-doped Cu2O(111) surface. In addition, we found that in most cases, vacancy formation of the coordinatively saturated Cu has higher vacancy formation energy than coordinatively unsaturated Cu atoms. In the electron localization function plots and the projected charge distributions of the local density of states, we found bonding enhancement between Cu and N in N-Cu2O(111) but no corresponding enhancement was observed in the F-doped surface. Our results showed that the interaction between the substitutional dopants and the Cu atoms affects the formation of the doped system and the Cu vacancy formation in the surface.

2.
RSC Adv ; 11(11): 6268-6283, 2021 Feb 02.
Article in English | MEDLINE | ID: mdl-35423162

ABSTRACT

Density functional theory was used to investigate the effects of doping alkaline earth metal atoms (beryllium, magnesium, calcium and strontium) on graphene. Electron transfer from the dopant atom to the graphene substrate was observed and was further probed by a combined electron localization function/non-covalent interaction (ELF/NCI) approach. This approach demonstrates that predominantly ionic bonding occurs between the alkaline earth dopants and the substrate, with beryllium doping having a variant characteristic as a consequence of electronegativity equalization attributed to its lower atomic number relative to carbon. The ionic bonding induces spin-polarized electronic structures and lower workfunctions for Mg-, Ca-, and Sr-doped graphene systems as compared to the pristine graphene. However, due to its variant bonding characteristic, Be-doped graphene exhibits non-spin-polarized p-type semiconductor behavior, which is consistent with previous works, and an increase in workfunction relative to pristine graphene. Dirac half-metal-like behavior was predicted for magnesium doped graphene while calcium doped and strontium doped graphene were predicted to have bipolar magnetic semiconductor behavior. These changes in the electronic and magnetic properties of alkaline earth doped graphene may be of importance for spintronic and other electronic device applications.

3.
J Phys Condens Matter ; 32(40): 405201, 2020 May 19.
Article in English | MEDLINE | ID: mdl-32428895

ABSTRACT

In this study, we performed density functional theory based calculations to determine the effect of the size of Cu x (x = 1 (adatom), 3 (trimer), 7 (heptamer)) clusters supported on Cu(111) toward the adsorption of CO, O, and CO2, and the dissociation of CO2. CO adsorbs with comparable adsorption energies on the different cluster systems, which are influenced by the reactivity of the Cu atoms in the cluster and the interaction of CO with the Cu atoms in the terrace. The O atom, on the other hand, will always favor to adsorb on hollow sites and is more stable on the hollow sites of smaller clusters. CO2 dissociates with lower activation energy on the cluster region than on flat Cu(111). We obtained the lowest activation energy on Cu3 due to its more reactive Cu atoms than the Cu7 case and due to the possibility of O to adsorb on the cluster region, which is not observed in the Cu1 case. The presented results will provide insights on future studies on supported cluster systems and their possible use as catalysts for CO2-related reactions.

4.
J Phys Condens Matter ; 31(41): 415201, 2019 Oct 16.
Article in English | MEDLINE | ID: mdl-31220815

ABSTRACT

We performed density functional theory (DFT) based calculations to investigate the interaction of CO2 and its dissociated species (CO and O) on Cu3 cluster supported on Cu(1 1 1) (Cu3/Cu(1 1 1)) surfaces. Similar investigations were conducted on Cu(1 1 1) for purpose of comparison. In general, adsorption of CO and O are stronger on the cluster region than on the terrace region of Cu3/Cu and on the flat Cu surface. CO2, on the other hand, is weakly adsorbed on the surfaces. With reference to CO2 dissociation on Cu(1 1 1), we found that the cluster lowers the activation barrier and provides a more stable adsorption of the dissociated species. The presence of co-adsorbed CO in the cluster, however, will increase the activation energy. The variation in the activation barrier with the amount of CO is influenced by the stability of the O atom from the dissociated CO2. We further found that the adsorption energy of O atom is a possible descriptor for CO2 dissociation on the cluster region. The Cu cluster supported on Cu surface could be a promising catalyst for CO2 related reactions based on the lower activation energy for CO2 dissociation on the system than on Cu(1 1 1).

5.
Bioresour Technol ; 279: 181-188, 2019 May.
Article in English | MEDLINE | ID: mdl-30731357

ABSTRACT

This study aimed to investigate the transport mechanisms of ions during forward-osmosis-driven (FO-driven) dewatering of microalgae using molecular dynamics (MD) simulations. The dynamical and structural properties of ions in FO systems of varying NaCl or MgCl2 draw solution (DS) concentrations were calculated and correlated. Results indicate that FO systems with higher DS concentration caused ions to have lower hydration numbers and higher coordination numbers leading to lower diffusion coefficients. The higher hydration number of Mg2+ ions resulted in significantly lower ionic permeability as compared to Na+ ions at all concentrations (p = 0.002). The simulations also revealed that higher DS concentrations led to higher accumulation of ions in the membrane. This study provides insights on the proper selection of DS for FO systems.


Subject(s)
Microalgae , Diffusion , Ions/chemistry , Molecular Dynamics Simulation , Osmosis , Permeability , Sodium Chloride/chemistry , Water
6.
J Chem Phys ; 140(24): 244707, 2014 Jun 28.
Article in English | MEDLINE | ID: mdl-24985668

ABSTRACT

The pathway of H diffusion that will induce the migration of Pd atom is investigated by employing first principles calculations based on density functional theory to explain the origin of missing-row reconstruction of Pd(110).The calculated activation barrier and the H-induced reconstruction energy reveal that the long bridge-to-tetrahedral configuration is the energetically favored process for the initial stage of reconstruction phenomenon. While the H diffusion triggers the migration of Pd atom, it is the latter process that significantly contributes to the activated missing-row reconstruction of Pd(110). Nonetheless, the strong interaction between the diffusing H and the Pd atoms dictates the occurrence of reconstructed surface.

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