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1.
Viruses ; 12(4)2020 04 18.
Article in English | MEDLINE | ID: mdl-32325716

ABSTRACT

West Nile virus (WNV) lineage 2 is expanding and causing large outbreaks in Europe. In this study, we analyzed the epidemiological, clinical, and virological features of WNV lineage 2 infection during the large outbreak that occurred in northern Italy in 2018. The study population included 86 patients with neuroinvasive disease (WNND), 307 with fever (WNF), and 34 blood donors. Phylogenetic analysis of WNV full genome sequences from patients' samples showed that the virus belonged to the widespread central/southern European clade of WNV lineage 2 and was circulating in the area at least since 2014. The incidence of WNND and WNF progressively increased with age and was higher in males than in females. Among WNND patients, the case fatality rate was 22%. About 70% of blood donors reported symptoms during follow-up. Within the first week after symptom onset, WNV RNA was detectable in the blood or urine of 80% of patients, while 20% and 40% of WNND and WNF patients, respectively, were WNV IgM-seronegative. In CSF samples of WNND patients, WNV RNA was typically detectable when WNV IgM antibodies were absent. Blunted or no WNV IgM response and high WNV IgG levels were observed in seven patients with previous flavivirus immunity.


Subject(s)
West Nile Fever/epidemiology , West Nile Fever/virology , West Nile virus/classification , West Nile virus/genetics , Aged , Aged, 80 and over , Animals , Antibodies, Viral/blood , Antibodies, Viral/immunology , Culicidae/virology , Disease Outbreaks , Female , Genome, Viral , Geography, Medical , Humans , Immunoglobulin G/blood , Immunoglobulin G/immunology , Immunoglobulin M/blood , Immunoglobulin M/immunology , Incidence , Male , Middle Aged , Public Health Surveillance , West Nile Fever/diagnosis , West Nile Fever/transmission , West Nile virus/immunology
2.
Euro Surveill ; 24(47)2019 Nov.
Article in English | MEDLINE | ID: mdl-31771697

ABSTRACT

BackgroundUsutu virus (USUV) is a mosquito-borne flavivirus, which shares its transmission cycle with the phylogenetically related West Nile virus (WNV). USUV circulates in several European countries and its activity has increased over the last 5 years.AimTo describe human cases of USUV infection identified by surveillance for WNV and USUV infection in the Veneto Region of northern Italy in 2018.MethodsFrom 1 June to 30 November 2018, all cases of suspected autochthonous arbovirus infection and blood donors who had a reactive WNV nucleic acid test were investigated for both WNV and USUV infection by in-house molecular methods. Anti-WNV and anti-USUV IgM and IgG antibodies were detected by ELISA and in-house immunofluorescence assay, respectively; positive serum samples were further tested by WNV and USUV neutralisation assays run in parallel.ResultsEight cases of USUV infection (one with neuroinvasive disease, six with fever and one viraemic blood donor who developed arthralgia and myalgia) and 427 cases of WNV infection were identified. A remarkable finding of this study was the persistence of USUV RNA in the blood and urine of three patients during follow-up. USUV genome sequences from two patients shared over 99% nt identity with USUV sequences detected in mosquito pools from the same area and clustered within lineage Europe 2.ConclusionsClinical presentation and laboratory findings in patients with USUV infection were similar to those found in patients with WNV infection. Cross-reactivity of serology and molecular tests challenged the differential diagnosis.


Subject(s)
Antibodies, Neutralizing/blood , Antibodies, Viral/blood , Culicidae/virology , Flavivirus Infections/diagnosis , Flavivirus/isolation & purification , Population Surveillance/methods , West Nile virus/isolation & purification , Animals , Diagnosis, Differential , Enzyme-Linked Immunosorbent Assay , Flavivirus/genetics , Flavivirus Infections/epidemiology , Flavivirus Infections/virology , Genotyping Techniques , Humans , Immunoglobulin G/blood , Immunoglobulin M/blood , Italy/epidemiology , Phylogeny , Sentinel Surveillance , West Nile Fever/virology , Whole Genome Sequencing
3.
Euro Surveill ; 24(21)2019 May.
Article in English | MEDLINE | ID: mdl-31138361

ABSTRACT

In 2018, there was a large West Nile virus (WNV) outbreak in northern Italy. We observed five atypical cases of WNV infection that were characterised by the presence of WNV RNA and WNV IgG at the time of diagnosis, but no IgM response during follow-up. Neutralisation assays demonstrated pre-existing Usutu virus immunity in all patients. Besides challenging diagnosis, the immunological crosstalk between the two viruses warrants further investigation on possible cross-protection or infection enhancement effects.


Subject(s)
Antibodies, Viral/blood , Flavivirus/immunology , Public Health Surveillance , West Nile Fever/diagnosis , West Nile virus/isolation & purification , Adult , Animals , Antibodies, Neutralizing/blood , Culex/virology , Disease Outbreaks , Enzyme-Linked Immunosorbent Assay , Female , Flavivirus/genetics , Humans , Immunoglobulin G/blood , Italy/epidemiology , Male , Middle Aged , Neutralization Tests , Phylogeny , Polymerase Chain Reaction , Real-Time Polymerase Chain Reaction , West Nile Fever/epidemiology , West Nile Fever/virology , West Nile virus/genetics , West Nile virus/immunology
4.
Biomed Chromatogr ; 32(11): e4333, 2018 Nov.
Article in English | MEDLINE | ID: mdl-29978912

ABSTRACT

Isavuconazole is a broad-spectrum triazole antifungal drug recently approved for the therapy of both invasive aspergillosis and mucormycosis. To support a widespread therapeutic drug monitoring of isavuconazole, a simple, sensitive, and precise high-performance liquid chromatography method with UV detection was developed and fully validated for the quantification of this drug in human plasma. The method involved a combined protein precipitation-solid-phase extraction and a chromatographic separation on a Waters XTerra RP18 (150 × 4.6 mm, 3.5 µm) column using an isocratic mobile phase of ammonium acetate buffer (pH 8.0, 10 mm) and acetonitrile (45:55, v/v). The UV detection was performed at 285 nm. This method was linear (correlation coefficients ≥0.998), specific (no interference with plasma components or various potentially co-administrated drugs), sensitive (lower limit of quantification of 0.025 µg/mL), reproducible (coefficients of variation were ≤7.9%) and accurate (deviations ranged from -5.0 to 8.0%) over the range of 0.025-10 µg/mL. The method fulfilled all of the US Food and Drug Administration guidelines validation criteria and performed well in an international proficiency testing program. The assay was also successfully applied to routine therapeutic drug monitoring of patients and to drug stability investigations under various conditions.


Subject(s)
Antifungal Agents/blood , Chromatography, High Pressure Liquid/methods , Nitriles/blood , Pyridines/blood , Spectrophotometry, Ultraviolet/methods , Triazoles/blood , Antifungal Agents/chemistry , Antifungal Agents/pharmacokinetics , Drug Stability , Humans , Limit of Detection , Linear Models , Nitriles/chemistry , Nitriles/pharmacokinetics , Pyridines/chemistry , Pyridines/pharmacokinetics , Reproducibility of Results , Triazoles/chemistry , Triazoles/pharmacokinetics
5.
J Pharm Biomed Anal ; 134: 275-281, 2017 Feb 05.
Article in English | MEDLINE | ID: mdl-27939848

ABSTRACT

Daclatasvir is an inhibitor of hepatitis C virus NS5A protein that is used for the therapy of chronic hepatitis. So far, published methods for analysis of daclatasvir in plasma are exclusively based on mass spectrometry, which is not always available in standard clinical laboratories. Thus, we wished to develop and validate a simple, but still reliable and sensitive high-performance liquid chromatography (HPLC) assay with UV detection for the quantification of daclatasvir, feasible for a wide-spread clinical routine use. The method consisted of solid-phase extraction of daclatasvir using Waters Oasis HLB 1cc cartridges, reversed-phase liquid chromatography with a Waters XTerra RP18 (150mm×4.6mm, 3.5µm) column and a mobile phase of ammonium acetate buffer (pH 5.0, 10mM) and acetonitrile (56:44, v/v), and UV detection at 318nm. This assay proved to be sensitive (lower limit of quantification of 0.05µg/mL), linear (correlation coefficients ≥0.997), specific (no interference with various potentially co-administrated drugs), reproducible (both intra-day and inter-day coefficients of variation ≤8.9%), and accurate (deviations ranged from -2.2 to 8.0% and from -6.5 to 9.2% for intra-day and inter-day assays, respectively). The method was applied to therapeutic monitoring of patients undergoing daclatasvir therapy for hepatitis C and showed to be reliable and robust. Thus, this method provides a simple, sensitive, precise, and reproducible assay for dosing daclatasvir that can be readily adaptable to routine use by clinical laboratories with standard equipment. In addition, the stability of daclatasvir in plasma was evaluated under various conditions, including after the heating procedure required for inactivation of infectious viruses and in different light exposure conditions. These studies evidenced photo-instability of the compound under sunlight exposure over time. Thus, blood sampling and the whole handling procedure have to be performed quickly and with minimal light exposure.


Subject(s)
Chromatography, Reverse-Phase/methods , Chromatography, Reverse-Phase/standards , Hepacivirus , Imidazoles/blood , Ultraviolet Rays , Carbamates , Chromatography, High Pressure Liquid/methods , Chromatography, High Pressure Liquid/standards , Drug Storage/methods , Drug Storage/standards , Hepacivirus/drug effects , Hepacivirus/metabolism , Humans , Imidazoles/pharmacology , Pyrrolidines , Reproducibility of Results , Valine/analogs & derivatives
6.
Ther Drug Monit ; 38(5): 579-86, 2016 10.
Article in English | MEDLINE | ID: mdl-27391086

ABSTRACT

BACKGROUND: Continuous veno-venous hemofiltration (CVVH) could affect the pharmacokinetic profile of linezolid (LZD). The aim of this study was to evaluate the LZD extracorporeal clearance using an in vitro CVVH model. METHODS: A sham miniaturized CVVH circuit (CARPEDIEM; Bellco, Mirandola, Italy) was set up with a polysulfone hemofilter (0.25 m; cutoff 50,000 Da) for 240 minutes using normal saline solution (0.9% wt/vol NaCl) and blood (n = 6) spiked with LZD. Drug solution samples were collected during CVVH at 10, 30, 60, 120, and 240 minutes. LZD levels were measured by high-performance liquid chromatography. RESULTS: Results were used to estimate pharmacokinetic parameters. The LZD baseline level decreased from 17.24 ± 0.54 to 9.73 ± 4.85 mg/L and from 11.75 ± 0.08 to 5.01 ± 0.67 mg/L in the first 10 minutes, and then increased to 13.2 ± 3.10 and 7.4 ± 0.71 mg/L in normal saline solution and blood, respectively. Mass balance analysis reported a rapid adsorption of LZD onto a polysulfone membrane followed by its release: a rebound phenomenon occurred. CONCLUSIONS: Although further studies are necessary to clarify this phenomenon, LZD level variations observed in our study should be considered to avoid antimicrobial underexposure. Several strategies are available for adjusting the dosage regimen of LZD, but therapeutic drug monitoring is highly recommended when it is used.


Subject(s)
Hemofiltration , Linezolid/pharmacokinetics , Anti-Infective Agents/blood , Anti-Infective Agents/pharmacokinetics , Humans , In Vitro Techniques , Linezolid/blood
7.
Eur J Paediatr Neurol ; 20(4): 588-96, 2016 Jul.
Article in English | MEDLINE | ID: mdl-27129875

ABSTRACT

OBJECTIVE: The study aimed to describe the prevalence of HSV DNA, VZV DNA, Enterovirus RNA, Parechovirus RNA, CMV DNA, EBV DNA, adenovirus DNA, HHV-6 DNA, HHV-7 DNA, HHV-8 DNA and Parvovirus B19DNA in children aged less 14 years with a suspected viral infection of the central nervous system in a clinical practice setting. METHODS: Between January 2012 and May 2015, cerebrospinal fluids from 304 children were tested with an in-house real-time PCR method. RESULTS: A positive PCR was detected in 64 subjects (21%): the mean number of tests performed in patients who showed a viral infection was 7.5, significantly higher (p = 0.001) with respect to that reported in negative samples (6.4). Enterovirus is the leading virus detected: 12 out of the 37 positive children reported were newborns (85.7% of all the newborns with a positive result). The second most frequently identified virus was HHV-7 (5 positive PCR out of 105 samples tested, 4.8%, if we excluded a child with a concomitant S. pneumoniae isolated), a prevalence significantly higher with respect to VZV (p = 0.02) and to CMV (p = 0.04). HHV-6 was the third most commonly identified aetiology (4.2%). All children were immunocompetent. SIGNIFICANCE: Only a minority of children had a specific viral aetiology identified: the rate of HHV-7 positivity suggests a routine testing of these viruses within the diagnostic algorithm in immunocompetent paediatric patients. This approach could help to define the clinical role of this herpesvirus.


Subject(s)
Central Nervous System Infections/cerebrospinal fluid , DNA, Viral/cerebrospinal fluid , RNA, Viral/cerebrospinal fluid , Virus Diseases/cerebrospinal fluid , Adenoviridae/genetics , Adenoviridae Infections/cerebrospinal fluid , Adenoviridae Infections/epidemiology , Central Nervous System Infections/epidemiology , Central Nervous System Infections/virology , Child , Child, Preschool , Cytomegalovirus/genetics , Cytomegalovirus Infections/cerebrospinal fluid , Cytomegalovirus Infections/epidemiology , Encephalitis, Herpes Simplex/cerebrospinal fluid , Encephalitis, Herpes Simplex/epidemiology , Encephalitis, Varicella Zoster/cerebrospinal fluid , Encephalitis, Varicella Zoster/epidemiology , Enterovirus/genetics , Enterovirus Infections/cerebrospinal fluid , Enterovirus Infections/epidemiology , Epstein-Barr Virus Infections/cerebrospinal fluid , Epstein-Barr Virus Infections/epidemiology , Female , Herpes Simplex/genetics , Herpesviridae Infections/cerebrospinal fluid , Herpesviridae Infections/epidemiology , Herpesvirus 3, Human/genetics , Herpesvirus 4, Human/genetics , Herpesvirus 6, Human/genetics , Herpesvirus 7, Human/genetics , Herpesvirus 8, Human/genetics , Humans , Infant, Newborn , Italy/epidemiology , Male , Parechovirus/genetics , Parvoviridae Infections/cerebrospinal fluid , Parvoviridae Infections/epidemiology , Parvovirus B19, Human/genetics , Picornaviridae Infections/cerebrospinal fluid , Picornaviridae Infections/epidemiology , Prevalence , Real-Time Polymerase Chain Reaction , Retrospective Studies , Roseolovirus Infections/cerebrospinal fluid , Roseolovirus Infections/epidemiology , Virus Diseases/epidemiology , Virus Diseases/virology
8.
Viruses ; 8(3): 79, 2016 Mar 14.
Article in English | MEDLINE | ID: mdl-26985902

ABSTRACT

Different human papillomavirus (HPV) types are characterized by differences in tissue tropism and ability to promote cell proliferation and transformation. In addition, clinical and experimental studies have shown that some genetic variants/lineages of high-risk HPV (HR-HPV) types are characterized by increased oncogenic activity and probability to induce cancer. In this study, we designed and validated a new method based on multiplex PCR-deep sequencing of the E6/E7 region of HR-HPV types to characterize HPV intra-type variants in clinical specimens. Validation experiments demonstrated that this method allowed reliable identification of the different lineages of oncogenic HPV types. Advantages of this method over other published methods were represented by its ability to detect variants of all HR-HPV types in a single reaction, to detect variants of HR-HPV types in clinical specimens with multiple infections, and, being based on sequencing of the full E6/E7 region, to detect amino acid changes in these oncogenes potentially associated with increased transforming activity.


Subject(s)
Genetic Variation , Genotyping Techniques/methods , Oncogene Proteins, Viral/genetics , Papillomaviridae/classification , Papillomaviridae/genetics , Papillomavirus Infections/virology , High-Throughput Nucleotide Sequencing , Humans , Multiplex Polymerase Chain Reaction
9.
Int J Infect Dis ; 44: 8-10, 2016 Mar.
Article in English | MEDLINE | ID: mdl-26820759

ABSTRACT

OBJECTIVES: Very few data exist on viral meningitis and encephalitis in elderly patients (>65 years old). METHODS: This study investigated the detection of herpes simplex virus (HSV), varicella zoster virus (VZV), human herpes virus 6 (HHV-6), HHV-7, HHV-8, cytomegalovirus (CMV), Epstein-Barr virus (EBV), enterovirus (EV), human adenovirus (HAdV), human parechoviruses (HPeVs), and tick-borne encephalitis virus (TBEV) through real-time PCR (RT-PCR) in patients >65 years old who had cerebrospinal fluid (CSF) tested for a suspected central nervous system infection. RESULTS: A total of 2868 RT-PCRs were performed on 502 CSF samples. Overall, 65 positive RT-PCRs were found: 23 for HSV (35.4% of positives), 15 for EV (23.1% of positives), 14 for EBV (21.5% of positives), 12 for VZV (18.5% of positives), and one for CMV (1.5% of positives). A positive RT-PCR in CSF was detected in 24 (17.4%) patients aged ≥ 80 years and in 35 (9.6%) patients aged 65-79 years (p=0.02). VZV was more frequently detected in the oldest subjects (5.9% vs. 1.6%, p=0.03). CONCLUSIONS: HSV was the most common viral aetiology identified in the study, with VZV infection being recognized more frequently in those patients aged ≥ 80 years.


Subject(s)
Central Nervous System Infections/virology , Meningitis, Viral/virology , Virus Diseases , Aged , Chickenpox , Cytomegalovirus/genetics , Encephalitis Viruses, Tick-Borne , Enterovirus Infections , Female , Herpes Zoster , Herpesviridae Infections/cerebrospinal fluid , Herpesvirus 3, Human , Herpesvirus 4, Human , Herpesvirus 6, Human/genetics , Herpesvirus 8, Human , Humans , Male , Meningitis, Viral/cerebrospinal fluid , Real-Time Polymerase Chain Reaction , Retrospective Studies
10.
J Pharm Biomed Anal ; 121: 197-203, 2016 Mar 20.
Article in English | MEDLINE | ID: mdl-26808069

ABSTRACT

A simple high-performance liquid chromatography method for the determination of the hepatitis C virus protease inhibitor simeprevir in human plasma was developed and validated. The method involved a rapid and simple solid-phase extraction of simeprevir using Oasis HLB 1cc cartridges, isocratic reversed-phase liquid chromatography on an XTerra RP18 (150 mm×4.6 mm, 3.5 µm) column, and ultraviolet detection at 225 nm. The mobile phase consisted of phosphate buffer (pH 6, 52.5 mM) and acetonitrile (30:70, v/v). This assay proved to be sensitive (lower limit of quantification of 0.05 µg/mL), linear (correlation coefficients ≥0.99), specific (no interference with various potentially co-administrated drugs), reproducible (both intra-day and inter-day coefficients of variation ≤8.3%), and accurate (deviations ranged from -8.0 to 1.2% and from -3.3 to 6.0% for intra-day and inter-day analysis, respectively). The method was applied to therapeutic monitoring of patients undergoing simeprevir treatment for hepatitis C and proved to be robust and reliable. Thus, this method provides a simple, sensitive, precise and reproducible assay for dosing simeprevir that can be readily adaptable to routine use by clinical laboratories with standard equipment.


Subject(s)
Chromatography, High Pressure Liquid/methods , Plasma/chemistry , Simeprevir/blood , Simeprevir/chemistry , Spectrophotometry, Ultraviolet/methods , Drug Stability , Hepacivirus/drug effects , Humans , Reproducibility of Results , Simeprevir/pharmacology
11.
J Med Screen ; 21(1): 30-7, 2014 Mar.
Article in English | MEDLINE | ID: mdl-24488593

ABSTRACT

OBJECTIVE: Cervical cancer screening by human papillomavirus (HPV) testing requires the use of additional triage and follow-up analyses. We evaluated women's compliance with and the performance of this strategy in a routine setting. SETTING: Five cervical service screening programmes in North-East Italy. METHODS: Eligible women aged 25-64 invited for a new screening episode underwent HPV testing for high risk types (hrHPV by Hybrid Capture 2) and cytology triage. Women with positive HPV and cytology results were referred for colposcopy; women with positive HPV but negative cytology results were referred to 1-year repeat hrHPV testing. RESULTS: Of 46,694 women screened by HPV testing up to December 2011, 3,211 (6.9%) tested hrHPV positive; 45% of these had a positive triage cytology. Those with negative cytology were invited for 1-yr repeat testing. Compliance with invitation was 61.6% at baseline and 85.3% at 1-yr repeat. Rate of persistent hrHPV positivity was 58% (830/1,435). Colposcopy performed in women with a positive hrHPV test at 1-yr repeat accounted for 36% of all colposcopies performed within the screening programmes. Cumulatively, a histological high-grade lesion was detected in 276 women (5.9‰ detection rate), 234 at baseline (85%), and 42 (15%) at 1-yr repeat. CONCLUSIONS: Compliance with hrHPV-based screening programmes was high both at baseline and at 1-yr repeat. Compared with the randomized trials, a higher proportion of triage cytology was read as positive, and only a small number of high-grade lesions were detected among the group of hrHPV positive cytology negative women who repeated testing 1-yr after baseline.


Subject(s)
Papillomaviridae/isolation & purification , Papillomavirus Infections/diagnosis , Uterine Cervical Neoplasms/diagnosis , Uterine Cervical Neoplasms/virology , Adult , Colposcopy/methods , Early Detection of Cancer , Female , Follow-Up Studies , Humans , Italy , Mass Screening/methods , Middle Aged , Papillomavirus Infections/virology , Predictive Value of Tests , Sensitivity and Specificity , Uterine Cervical Dysplasia/diagnosis , Uterine Cervical Dysplasia/virology
12.
Viruses ; 5(11): 2825-39, 2013 Nov 22.
Article in English | MEDLINE | ID: mdl-24284876

ABSTRACT

Human cases of West Nile virus (WNV) disease have been reported in Italy since 2008. So far, most cases have been identified in north-eastern Italy, where, in 2012, the largest outbreak of WNV infection ever recorded in Italy occurred. Most cases of the 2012 outbreak were identified in the Veneto region, where a special surveillance plan for West Nile fever was in place. In this outbreak, 25 cases of West Nile neuroinvasive disease and 17 cases of fever were confirmed. In addition, 14 WNV RNA-positive blood donors were identified by screening of blood and organ donations and two cases of asymptomatic infection were diagnosed by active surveillance of subjects at risk of WNV exposure. Two cases of death due to WNND were reported. Molecular testing demonstrated the presence of WNV lineage 1 in all WNV RNA-positive patients and, in 15 cases, infection by the novel Livenza strain was ascertained. Surveillance in other Italian regions notified one case of neuroinvasive disease in the south of Italy and two cases in Sardinia. Integrated surveillance for WNV infection remains a public health priority in Italy and vector control activities have been strengthened in areas of WNV circulation.


Subject(s)
West Nile Fever/epidemiology , West Nile Fever/virology , West Nile virus/isolation & purification , Adolescent , Adult , Aged , Aged, 80 and over , Child , Disease Outbreaks , Female , Humans , Italy/epidemiology , Male , Middle Aged , Molecular Sequence Data , Phylogeny , West Nile Fever/diagnosis , West Nile virus/classification , West Nile virus/genetics , Young Adult
13.
J Infect Dis ; 208(7): 1086-92, 2013 Oct 01.
Article in English | MEDLINE | ID: mdl-23821721

ABSTRACT

Detection of West Nile virus (WNV) RNA in urine has been anecdotally described and proposed for the diagnosis of WNV infection. This study reports the routine use of real-time reverse-transcription polymerase chain reaction for the detection of WNV RNA in urine to support diagnosis of WNV infection during the large outbreak that occurred in northeastern Italy in 2012. Fourteen of 32 patients (43.8%) with symptomatic WNV infection, defined as neuroinvasive disease and fever, had detectable WNV RNA in urine at the time of diagnosis, at a higher rate and load and for a longer time than detection of WNV RNA in blood. Detection of WNV RNA in urine was less frequent (2 of 14 patients [14.2%]) in blood donors in whom WNV infection was identified by WNV nucleic acid amplification testing. Infectious virus was isolated from the urine of a patient with neuroinvasive disease and a high WNV RNA load in urine.


Subject(s)
Urine/virology , West Nile Fever/virology , West Nile virus/isolation & purification , Adult , Aged , Aged, 80 and over , Blood/virology , Disease Outbreaks , Female , Humans , Italy/epidemiology , Male , Middle Aged , Molecular Diagnostic Techniques/methods , RNA, Viral/isolation & purification , Real-Time Polymerase Chain Reaction/methods , Reverse Transcriptase Polymerase Chain Reaction/methods , Virology/methods , West Nile Fever/epidemiology
14.
J Clin Virol ; 55(3): 256-61, 2012 Nov.
Article in English | MEDLINE | ID: mdl-22877561

ABSTRACT

BACKGROUND: Accurate HPV detection and genotyping tests are useful for management of women with HPV infection and for monitoring HPV vaccine efficacy. OBJECTIVES: To evaluate the performance of the INNO-LiPA HPV Genotyping Extra assay (SPF10-LiPA) for the detection of carcinogenic HPV types in women referred for opportunistic cervical cancer screening by comparison with the Hybrid Capture 2 (HC2) assay. STUDY DESIGN: Cross-sectional analysis from baseline data of HC2 and SPF10-LiPA testing in cervical specimens collected from 1580 consecutive women and correlation with cervical cytology and histology data, when available. RESULTS: The two assays showed a good agreement for detection of carcinogenic HPV types and reported the same prevalence of carcinogenic HPV infections in different age groups. Stratification of study subjects by cervical cytology interpretation and histology results demonstrated that the two tests gave very similar results in the different cytology interpretation groups and in CIN2 and CIN3 samples, while in

Subject(s)
Molecular Diagnostic Techniques/methods , Papillomaviridae/genetics , Papillomaviridae/isolation & purification , Papillomavirus Infections/diagnosis , Virology/methods , Adult , Cervix Uteri/virology , Cross-Sectional Studies , Cytological Techniques , Female , Genotype , Histocytochemistry , Humans , Middle Aged , Papillomaviridae/classification
15.
J Infect Chemother ; 18(4): 587-90, 2012 Aug.
Article in English | MEDLINE | ID: mdl-22422300

ABSTRACT

Most antiretrovirals are metabolized in the liver, and overexposure could be more common in human immunodeficiency virus (HIV)-infected patients with hepatic impairment. Careful monitoring of potential drug-related liver injury in clinical practice is necessary. The aim of our study was to analyze the trough concentrations (C (trough)) of atazanavir (ATV) in the plasma of HIV/hepatitis C virus (HCV)-co-infected patients and to compare the values with those of a HIV-infected control population. C (trough) values (22-26 h after last intake) of atazanavir, following the administration of atazanavir/ritonavir 300/100 mg once daily as part of antiretroviral therapy, were assessed by HPLC. We also collected data on dosing of atazanavir, and on demographic (age, gender, and ethnicity), physiological (weight and body mass index), and clinical parameters (CD4+ cell count, HIV-RNA viremia, co-medication, and hepatitis C co-infection). A total of 28 Caucasian HIV-infected adults were studied, of whom 13 were HIV/HCV co-infected. No baseline characteristics differed between the two cohorts, except statistically significant differences regarding ALT, AST, and total bilirubin. The median (range) plasma ATV C (trough) levels were 0.62 (0.05-3.22) µg/ml in HIV patients and 0.32 (0.04-3.37) µg/ml in HIV/HCV patients. Thus, there was no significant difference in plasma trough levels of atazanavir in the two cohorts. In our patients with mild impairment of hepatic function caused by HCV infection, atazanavir C (trough) was comparable in HIV-infected and HIV/HCV-co-infected patients.


Subject(s)
HIV Infections/drug therapy , HIV Infections/metabolism , HIV Protease Inhibitors/pharmacokinetics , Hepatitis C/metabolism , Oligopeptides/pharmacokinetics , Pyridines/pharmacokinetics , Ritonavir/therapeutic use , Adolescent , Adult , Aged , Analysis of Variance , Antiretroviral Therapy, Highly Active , Atazanavir Sulfate , Cohort Studies , Coinfection/drug therapy , Coinfection/metabolism , Coinfection/virology , Drug Interactions , Drug Monitoring , Female , HIV Infections/virology , HIV Protease Inhibitors/blood , HIV Protease Inhibitors/therapeutic use , Hepatitis C/virology , Humans , Male , Middle Aged , Oligopeptides/blood , Oligopeptides/therapeutic use , Pyridines/blood , Pyridines/therapeutic use , Viral Load
16.
J Clin Virol ; 52(2): 93-7, 2011 Oct.
Article in English | MEDLINE | ID: mdl-21802982

ABSTRACT

BACKGROUND: An accurate tool for human papillomavirus (HPV) typing is important both for management of patients with HPV infection and for surveillance studies. OBJECTIVES: Design and evaluation of an HPV typing method based on 454 next generation sequencing (NGS) technology. STUDY DESIGN: Development of an HPV typing method based on 454 NGS of HPV L1 amplicons generated with MY09/11-based primers. Evaluation of the NGS method in control samples and in a panel of cervical cytological samples. Comparison of the NGS typing method with cycle sequencing and with the reverse hybridization-based INNO-LiPA HPV Genotyping Extra assay (LiPA). RESULTS: In control samples carrying mixtures of HPV16 and HPV18 DNA, the NGS method could reliably detect genotype sequences occurring at a frequency of 1% in multiple infections with a sensitivity of 100 genome equivalents/µL. In cervical cytology samples, comparison with cycle sequencing demonstrated accuracy of HPV typing by NGS. The NGS method had however lower sensitivity for some HPV types than LiPA, conceivably due to the poor sensitivity of the MY09/11-based primers. At variance, LiPA could not detect HPV types which were present in low proportion in multiple infections (<10% of HPV reads obtained by NGS). In addition, NGS allowed identifying the presence of different variants of the same HPV type in a specimen. CONCLUSIONS: NGS is a promising method for HPV typing because of its high sensitivity in multiple infection and its potential ability to detect a broad spectrum of HPV types, subtypes, and variants.


Subject(s)
Genotyping Techniques/methods , High-Throughput Nucleotide Sequencing/methods , Papillomaviridae/genetics , Sequence Analysis, DNA/methods , Capsid Proteins/genetics , Cell Line, Tumor , Female , Genetic Variation , Genotype , HeLa Cells , Humans , Oncogene Proteins, Viral/genetics , Papillomaviridae/classification , Sensitivity and Specificity
17.
BMC Infect Dis ; 11: 150, 2011 May 25.
Article in English | MEDLINE | ID: mdl-21612634

ABSTRACT

BACKGROUND: A study including 166 subjects was performed to investigate the frequency and persistence over a 6-month interval of concurrent oral and anal Human Papillomavirus (HPV) infections in Human Immunodeficiency Virus (HIV)-infected men who have sex with men (MSM). METHODS: Patients with no previously documented HPV-related anogenital lesion/disease were recruited to participate in a longitudinal study. Polymerase chain reaction (PCR) was performed to detect HPV from oral and anal swabs and to detect Human Herpes Virus 8 (HHV-8) DNA in saliva on 2 separate specimen series, one collected at baseline and the other collected 6 months later. A multivariate logistic analysis was performed using anal HPV infection as the dependent variable versus a set of covariates: age, HIV plasma viral load, CD4+ count, hepatitis B virus (HBV) serology, hepatitis C virus (HCV) serology, syphilis serology and HHV-8 viral shedding. A stepwise elimination of covariates with a p-value > 0.1 was performed. RESULTS: The overall prevalence of HPV did not vary significantly between the baseline and the follow-up, either in the oral (20.1 and 21.3%, respectively) or the anal specimens (88.6 and 86.3%). The prevalence of high-risk (HR) genotypes among the HPV-positive specimens was similar in the oral and anal infections (mean values 24.3% and 20.9%). Among 68 patients with either a HR, low-risk (LR) or undetermined genotype at baseline, 75% had persistent HPV and the persistence rates were 71.4% in HR infections and 76.7% in LR infections. There was a lack of genotype concordance between oral and anal HPV samples. The prevalence of HR HPV in anus appeared to be higher in the younger patients, peaking (> 25%) in the 43-50 years age group. A decrease of the high level of anal prevalence of all genotypes of HPV in the patients > 50 years was evident. HHV-8 oral shedding was positively related to HPV anal infection (p = 0.0046). A significant correlation was found between the persistence of HHV-8 shedding and HIV viral load by logistic bivariate analysis (Odds Ratio of HHV-8 persistence for 1-log increase of HIV viral load = 1.725 ± 0.397, p = 0.018). CONCLUSIONS: A high prevalence of HPV infection was found in our cohort of HIV-infected MSM, with a negative correlation between anal HPV infection and CD4 cell count.


Subject(s)
Alphapapillomavirus/isolation & purification , Anus Diseases/virology , HIV Infections/complications , Homosexuality, Male/statistics & numerical data , Mouth Diseases/virology , Papillomavirus Infections/virology , Adult , Aged , Aged, 80 and over , Alphapapillomavirus/classification , Alphapapillomavirus/genetics , Anal Canal/virology , Anus Diseases/complications , Anus Diseases/epidemiology , Cohort Studies , HIV Infections/epidemiology , HIV Infections/psychology , HIV Infections/virology , Homosexuality, Male/psychology , Humans , Italy/epidemiology , Longitudinal Studies , Male , Middle Aged , Mouth Diseases/complications , Mouth Diseases/epidemiology , Papillomavirus Infections/complications , Papillomavirus Infections/epidemiology , Prevalence , Sexual Behavior , Young Adult
18.
J Med Virol ; 82(8): 1424-30, 2010 Aug.
Article in English | MEDLINE | ID: mdl-20572068

ABSTRACT

Human papillomavirus (HPV) infection is the most common sexually transmitted infection in both men and women, but there are limited data comparing the prevalence of HPV infection between genders and in different anogenital sites. This cross-sectional analysis describes the distribution of HPV types in the genital tract of 3,410 consecutive females and 1,033 males undergoing voluntary screening for HPV and referred to a single institution. The relationship between specific HPV types and the presence of anogenital lesions was examined. In both females and males, the overall prevalence of HPV infection was about 40%. A wide variety of HPV types was identified, but the prevalence of different types was remarkably similar in the two genders, even when considering different anatomical sites. HPV-6 was the most frequent (prevalence 13%) type in all anogenital sites in men followed by HPV-16 (7%), while HPV-16 was the most common type in women (about 6%), either in the cervix, vagina, or vulva, followed by HPV-6. In addition to HPV-16, HPV-58, HPV-33, HPV-31, and HPV-56 were the carcinogenic types detected most commonly and were significantly associated with high-grade squamous intraepithelial cervical lesions, while HPV-53 and HPV-66 were the most common among possibly carcinogenic types. In both genders, anogenital warts were associated with HPV-6 and HPV-11 infection, and, less frequently, with other types, like HPV-54, HPV-62, and HPV-66. These results show that genital HPV infection involves numerous HPV types, which have similar distribution patterns in females and males and in different anogenital anatomical sites.


Subject(s)
Anal Canal/virology , Genitalia/virology , Papillomaviridae/classification , Papillomaviridae/isolation & purification , Papillomavirus Infections/virology , Adolescent , Adult , Aged , Anal Canal/pathology , Cross-Sectional Studies , Female , Genitalia/pathology , Humans , Male , Middle Aged , Papillomaviridae/genetics , Papillomavirus Infections/pathology , Prevalence , Sex Factors , Warts/pathology , Warts/virology , Young Adult
19.
Antimicrob Agents Chemother ; 54(5): 1930-40, 2010 May.
Article in English | MEDLINE | ID: mdl-20194695

ABSTRACT

WC5 is a 6-aminoquinolone that potently inhibits the replication of human cytomegalovirus (HCMV) but has no activity, or significantly less activity, against other herpesviruses. Here we investigated the nature of its specific anti-HCMV activity. Structure-activity relationship studies on a small series of analogues showed that WC5 possesses the most suitable pattern of substitutions around the quinolone scaffold to give potent and selective anti-HCMV activity. Studies performed to identify the possible target of WC5 indicated that it prevents viral DNA synthesis but does not significantly affect DNA polymerase activity. In yield reduction experiments with different multiplicities of infection, the anti-HCMV activity of WC5 appeared to be highly dependent on the viral inoculum, suggesting that WC5 may act at an initial stage of virus replication. Consistently, time-of-addition and time-of-removal studies demonstrated that WC5 affects a phase of the HCMV replicative cycle that precedes viral DNA synthesis. Experiments to monitor the effects of the compound on virus attachment and entry showed that it does not inhibit either process. Evaluation of viral mRNA and protein expression revealed that WC5 targets an event of the HCMV replicative cycle that follows the transcription and translation of immediate-early genes and precedes those of early and late genes. In cell-based assays to test the effects of WC5 on the transactivating activity of the HCMV immediate-early 2 (IE2) protein, WC5 markedly interfered with IE2-mediated transactivation of viral early promoters. Finally, WC5 combined with ganciclovir in checkerboard experiments exhibited highly synergistic activity. These findings suggest that WC5 deserves further investigation as a candidate anti-HCMV drug with a novel mechanism of action.


Subject(s)
Aminoquinolines/pharmacology , Cytomegalovirus Infections/drug therapy , Cytomegalovirus/drug effects , Fibroblasts/virology , Immediate-Early Proteins/metabolism , Trans-Activators/metabolism , Antiviral Agents/pharmacology , Cells, Cultured , Cytomegalovirus/growth & development , Cytomegalovirus Infections/virology , DNA-Directed DNA Polymerase/metabolism , Drug Synergism , Fibroblasts/cytology , Gene Expression Regulation, Viral/drug effects , Humans , Transcription, Genetic/drug effects , Virus Replication/drug effects
20.
J Antimicrob Chemother ; 63(3): 575-8, 2009 Mar.
Article in English | MEDLINE | ID: mdl-19151039

ABSTRACT

OBJECTIVES: The aim of this study was to compare amprenavir pharmacokinetics in HIV/hepatitis C virus (HCV)-co-infected cirrhotic patients receiving non-boosted fosamprenavir 700 mg twice daily with HCV/HIV-co-infected non-cirrhotic subjects and HIV-mono-infected subjects receiving fosamprenavir/ritonavir 700/100 mg twice daily. Liver stiffness at baseline and alanine aminotransferase levels at baseline and during follow-up were measured in order to find a correlation between drug levels and liver fibrosis or hepatotoxicity. METHODS: Amprenavir plasma concentration was determined by HPLC. Liver stiffness was measured by transient elastometry. Liver function tests were determined every 1-3 months during follow-up. RESULTS: Nineteen HIV-infected patients were included. Eight had chronic HCV hepatitis (group NC), five had HCV-related liver cirrhosis (group C) and six were HIV-mono-infected (group M). In group C patients, amprenavir C(trough), AUC(0-12) and half-life were 86%/83%, 64%/55% and 58%/59% lower when compared with controls and co-infected subjects without cirrhosis, respectively; conversely, drug clearance in cirrhotics was 181%/124% higher. In 3/5 cirrhotic patients (60%) and in 2/14 non-cirrhotic patients (14%), C(trough) was below the minimum target concentration of 400 ng/mL; nonetheless, in all these patients, HIV viral load was undetectable. No correlation was found between amprenavir pharmacokinetics and liver stiffness or hepatotoxicity at follow-up. CONCLUSIONS: On the basis of these data, it seems reasonable to boost fosamprenavir with ritonavir even in cirrhotic patients; amprenavir pharmacokinetics could not be predicted by liver stiffness and seem not to predict hepatotoxicity at follow-up.


Subject(s)
Anti-HIV Agents/pharmacokinetics , Carbamates/pharmacokinetics , HIV Infections/complications , HIV Infections/drug therapy , Hepatitis C/complications , Liver Cirrhosis , Organophosphates/pharmacokinetics , Sulfonamides/pharmacokinetics , Adult , Alanine Transaminase/blood , Anti-HIV Agents/administration & dosage , Anti-HIV Agents/therapeutic use , Carbamates/administration & dosage , Carbamates/therapeutic use , Chromatography, High Pressure Liquid , Elasticity Imaging Techniques , Female , Furans , HIV/isolation & purification , Humans , Liver/pathology , Male , Middle Aged , Organophosphates/administration & dosage , Organophosphates/therapeutic use , Plasma/chemistry , Sulfonamides/administration & dosage , Sulfonamides/therapeutic use , Viral Load
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