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1.
Cell Mol Gastroenterol Hepatol ; 17(5): 827-852, 2024.
Article in English | MEDLINE | ID: mdl-38307490

ABSTRACT

BACKGROUND & AIMS: Micronutrient deficiency (MND) (ie, lack of vitamins and minerals) during pregnancy is a major public health concern. Historically, studies have considered micronutrients in isolation; however, MNDs rarely occur alone. The impact of co-occurring MNDs on public health, mainly in shaping mucosal colonization by pathobionts from the Enterobacteriaceae family, remains undetermined due to lack of relevant animal models. METHODS: To establish a maternal murine model of multiple MND (MMND), we customized a diet deficient in vitamins (A, B12, and B9) and minerals (iron and zinc) that most commonly affect children and women of reproductive age. Thereafter, mucosal adherence by Enterobacteriaceae, the associated inflammatory markers, and proteomic profile of intestines were determined in the offspring of MMND mothers (hereafter, low micronutrient [LM] pups) via bacterial plating, flow cytometry, and mass spectrometry, respectively. For human validation, Enterobacteriaceae abundance, assessed via 16s sequencing of 3-month-old infant fecal samples (n = 100), was correlated with micronutrient metabolites using Spearman's correlation in meconium of children from the CHILD birth cohort. RESULTS: We developed an MMND model and reported an increase in colonic abundance of Enterobacteriaceae in LM pups at weaning. Findings from CHILD cohort confirmed a negative correlation between Enterobacteriaceae and micronutrient availability. Furthermore, pro-inflammatory cytokines and increased infiltration of lymphocyte antigen 6 complex high monocytes and M1-like macrophages were evident in the colons of LM pups. Mechanistically, mitochondrial dysfunction marked by reduced expression of nicotinamide adenine dinucleotide (NAD)H dehydrogenase and increased expression of NAD phosphate oxidase (Nox) 1 contributed to the Enterobacteriaceae bloom. CONCLUSION: This study establishes an early life MMND link to intestinal pathobiont colonization and mucosal inflammation via damaged mitochondria in the offspring.


Subject(s)
Malnutrition , NAD , Pregnancy , Infant , Female , Humans , Animals , Mice , Proteomics , Disease Models, Animal , Host Microbial Interactions , Vitamins , Micronutrients , Minerals
2.
Gut Microbes ; 15(2): 2267189, 2023 12.
Article in English | MEDLINE | ID: mdl-37842938

ABSTRACT

Quorum Sensing (QS) is a form of cell-to-cell communication that enables bacteria to modify behavior according to their population density. While QS has been proposed as a potential intervention against pathogen infection, QS-mediated communication within the mammalian digestive tract remains understudied. Using an LC-MS/MS approach, we discovered that Citrobacter rodentium, a natural murine pathogen used to model human infection by pathogenic Escherichia coli, utilizes the CroIR system to produce three QS-molecules. We then profiled their accumulation both in vitro and across different gastrointestinal sites over the course of infection. Importantly, we found that in the absence of QS capabilities the virulence of C. rodentium is enhanced. This highlights the role of QS as an effective mechanism to regulate virulence according to the pathogen's spatio-temporal context to optimize colonization and transmission success. These results also demonstrate that inhibiting QS may not always be an effective strategy for the control of virulence.


Subject(s)
Gastrointestinal Microbiome , Quorum Sensing , Humans , Animals , Mice , Virulence , Citrobacter rodentium , Chromatography, Liquid , Tandem Mass Spectrometry , Gastrointestinal Tract , Bacterial Proteins/genetics , Gene Expression Regulation, Bacterial , Mammals
3.
Gut Microbes ; 15(1): 2190303, 2023.
Article in English | MEDLINE | ID: mdl-36951510

ABSTRACT

Enterohemorrhagic Escherichia coli (EHEC) is a major cause of severe bloody diarrhea, with potentially lethal complications, such as hemolytic uremic syndrome. In humans, EHEC colonizes the colon, which is also home to a diverse community of trillions of microbes known as the gut microbiota. Although these microbes and the metabolites that they produce represent an important component of EHEC's ecological niche, little is known about how EHEC senses and responds to the presence of gut microbiota metabolites. In this study, we used a combined RNA-Seq and Tn-Seq approach to characterize EHEC's response to metabolites from an in vitro culture of 33 human gut microbiota isolates (MET-1), previously demonstrated to effectively resolve recurrent Clostridioides difficile infection in human patients. Collectively, the results revealed that EHEC adjusts to growth in the presence of microbiota metabolites in two major ways: by altering its metabolism and by activating stress responses. Metabolic adaptations to the presence of microbiota metabolites included increased expression of systems for maintaining redox balance and decreased expression of biotin biosynthesis genes, reflecting the high levels of biotin released by the microbiota into the culture medium. In addition, numerous genes related to envelope and oxidative stress responses (including cpxP, spy, soxS, yhcN, and bhsA) were upregulated during EHEC growth in a medium containing microbiota metabolites. Together, these results provide insight into the molecular mechanisms by which pathogens adapt to the presence of competing microbes in the host environment, which ultimately may enable the development of therapies to enhance colonization resistance and prevent infection.


Subject(s)
Enterohemorrhagic Escherichia coli , Escherichia coli Infections , Gastrointestinal Microbiome , Microbiota , Humans , Enterohemorrhagic Escherichia coli/genetics , Biotin/metabolism , Colon
4.
ISME J ; 17(1): 36-46, 2023 01.
Article in English | MEDLINE | ID: mdl-36153406

ABSTRACT

The gastrointestinal (GI) environment plays a critical role in shaping enteric infections. Host environmental factors create bottlenecks, restrictive events that reduce the genetic diversity of invading bacterial populations. However, the identity and impact of bottleneck events on bacterial infection are largely unknown. We used Citrobacter rodentium infection of mice, a model of human pathogenic Escherichia coli infections, to examine bacterial population dynamics and quantify bottlenecks to host colonization. Using Sequence Tag-based Analysis of Microbial Populations (STAMP) we characterized the founding population size (Nb') and relatedness of C. rodentium populations at relevant tissue sites during early- and peak-infection. We demonstrate that the GI environment severely restricts the colonizing population, with an average Nb' of only 12-43 lineages (of 2,000+ inoculated) identified regardless of time or biogeographic location. Passage through gastric acid and escape to the systemic circulation were identified as major bottlenecks during C. rodentium colonization. Manipulating such events by increasing gastric pH dramatically increased intestinal Nb'. Importantly, removal of the stomach acid barrier had downstream consequences on host systemic colonization, morbidity, and mortality. These findings highlight the capability of the host GI environment to limit early pathogen colonization, controlling the population of initial founders with consequences for downstream infection outcomes.


Subject(s)
Enterobacteriaceae Infections , Escherichia coli Infections , Mice , Humans , Animals , Citrobacter rodentium/genetics , Gastric Acid , Enterobacteriaceae Infections/microbiology , Enterobacteriaceae Infections/pathology , Gastrointestinal Tract/microbiology , Mice, Inbred C57BL
5.
Toxins (Basel) ; 14(7)2022 07 17.
Article in English | MEDLINE | ID: mdl-35878234

ABSTRACT

Bothrops atrox snakebites are a relevant problem in the Amazon basin. In this biodiverse region, the ethnomedicinal approach plays an important role as an alternative to antivenom therapy. Urospatha sagittifolia (Araceae) is a plant used for this purpose; however, its neutralizing properties have not been scientifically accessed. To fill this gap, we investigated the ability of U. sagittifolia to modulate the catalytic activity of Bothrops atrox venom, and their toxic consequences, such as local damage and lethality. The venom profile of B. atrox was assessed by chromatography and electrophoresis. Inhibition of the three main enzymatic and medically important toxins from the venom was evaluated using synthetic substrates and quantified by chromogenic activity assays. Additionally, the neutralization of lethality, hemorrhage and edema were investigated by in vivo assays. The possible interactions between venom proteins and plant molecules were visualized by polyacrylamide gel electrophoresis. Finally, the phytochemical constituents present in the ethanolic extract were determined by qualitative and quantitative analyses. The ethanolic extract reduced the activity of the three main enzymes of venom target, achieving ranges from 19% to 81% of inhibition. Our in vivo venom neuralizations assays showed a significant inhibition of edema (38.72%) and hemorrhage (42.90%). Additionally, lethality was remarkably counteracted. The highest extract ratio evaluated had a 75% survival rate. Our data support the biomedical value of U. sagittifolia as a source of natural enzyme inhibitors able to neutralize catalytically active B. atrox venom toxins and their toxic effects.


Subject(s)
Araceae , Bothrops , Crotalid Venoms , Snake Bites , Animals , Antivenins/chemistry , Antivenins/pharmacology , Crotalid Venoms/toxicity , Edema/chemically induced , Edema/drug therapy , Ethanol/chemistry , Hemorrhage/chemically induced , Hemorrhage/drug therapy , Plant Extracts/chemistry , Plant Extracts/pharmacology , Snake Bites/drug therapy
6.
Cell Rep ; 39(4): 110731, 2022 04 26.
Article in English | MEDLINE | ID: mdl-35476983

ABSTRACT

The type VI secretion system (T6SS) is a contractile nanomachine widely distributed among pathogenic and commensal Gram-negative bacteria. The T6SS is used for inter-bacterial competition to directly kill competing species; however, its importance during bacterial infection in vivo remains poorly understood. We report that the murine pathogen Citrobacter rodentium, used as a model for human pathogenic Escherichia coli, harbors two functional T6SSs. C. rodentium employs its T6SS-1 to colonize the murine gastrointestinal tract by targeting commensal Enterobacteriaceae. We identify VgrG1 as a C. rodentium T6SS antibacterial effector, which exhibits toxicity in E. coli. Conversely, commensal prey species E. coli Mt1B1 employs two T6SSs of its own to counter C. rodentium colonization. Collectively, these data demonstrate that the T6SS is a potent weapon during bacterial competition and is used by both invading pathogens and resident microbiota to fight for a niche in the hostile gut environment.


Subject(s)
Type VI Secretion Systems , Animals , Bacteria , Escherichia coli , Gastrointestinal Tract/microbiology , Humans , Mice , Symbiosis
7.
Sci Rep ; 11(1): 23630, 2021 12 08.
Article in English | MEDLINE | ID: mdl-34880286

ABSTRACT

Intracellular pathogens need to establish an intracellular replicative niche to promote survival and replication within the hostile environment inside the host cell. Salmonella enterica serovar Typhimurium (S. Typhimurium) initiates formation of the unique Salmonella-containing vacuole and an extensive network of Salmonella-induced tubules in order to survive and thrive within host cells. At least six effectors secreted by the type III secretion system encoded within Salmonella pathogenicity island-2 (SPI-2), namely SifA, SopD2, PipB2, SteA, SseJ, and SseF, purportedly manipulate host cell intracellular trafficking and establish the intracellular replicative niche for S. Typhimurium. The phenotypes of these effectors are both subtle and complex, complicating elucidation of the mechanism underpinning host cell manipulation by S. Typhimurium. In this work we used stable isotope labeling of amino acids in cell culture (SILAC) and a S. Typhimurium mutant that secretes increased amounts of effectors to identify cognate effector binding partners during infection. Using this method, we identified the host protein annexin A2 (AnxA2) as a binding partner for both SopD2 and PipB2 and were able to confirm its binding to SopD2 and PipB2 by reciprocal pull down, although there was a low level of non-specific binding of SopD2-2HA and PipB2-2HA to the Ni-Sepharose beads present. We further showed that knockdown of AnxA2 altered the intracellular positioning of the Salmonella containing vacuole (SCV). This suggests that AnxA2 plays a role in the subcellular positioning of the SCV which could potentially be mediated through protein-protein interactions with either SopD2 or PipB2. This demonstrates the value of studying effector interactions using proteomic techniques and natural effector delivery during infection rather than transfection.


Subject(s)
Annexin A2/metabolism , Bacterial Proteins/metabolism , Proteomics/methods , Salmonella typhimurium/metabolism , Salmonella typhimurium/pathogenicity , Annexin A2/genetics , Electrophoresis, Polyacrylamide Gel , Gene Knockdown Techniques , HeLa Cells , Humans , Isotope Labeling , Mass Spectrometry/methods
8.
Elife ; 102021 04 20.
Article in English | MEDLINE | ID: mdl-33876729

ABSTRACT

Bacterial members of the infant gut microbiota and bacterial-derived short-chain fatty acids (SCFAs) have been shown to be protective against childhood asthma, but a role for the fungal microbiota in asthma etiology remains poorly defined. We recently reported an association between overgrowth of the yeast Pichia kudriavzevii in the gut microbiota of Ecuadorian infants and increased asthma risk. In the present study, we replicated these findings in Canadian infants and investigated a causal association between early life gut fungal dysbiosis and later allergic airway disease (AAD). In a mouse model, we demonstrate that overgrowth of P. kudriavzevii within the neonatal gut exacerbates features of type-2 and -17 inflammation during AAD later in life. We further show that P. kudriavzevii growth and adherence to gut epithelial cells are altered by SCFAs. Collectively, our results underscore the potential for leveraging inter-kingdom interactions when designing putative microbiota-based asthma therapeutics.


Subject(s)
Asthma/microbiology , Gastrointestinal Microbiome/physiology , Pichia/physiology , Animals , Bacteria , Bacterial Physiological Phenomena , Case-Control Studies , Child , Child, Preschool , Humans , Infant , Mice, Inbred C57BL , Specific Pathogen-Free Organisms
9.
Phys Rev E ; 103(2-1): 022206, 2021 02.
Article in English | MEDLINE | ID: mdl-33736062

ABSTRACT

Synchronization among coupled oscillators is a common feature of symmetrically coupled networks with homogeneous, i.e., identical, oscillators. Recently, it was reported [T. Nishikawa and A. Motter, Phys. Rev. Lett. 117, 114101 (2016)PRLTAO0031-900710.1103/PhysRevLett.117.114101 and Y. Zhang, T. Nishikawa, and A. E. Motter, Phys. Rev. E 95, 062215 (2017)2470-004510.1103/PhysRevE.95.062215], however, that in networks with asymmetrically coupled oscillators, synchronization can only be found to be stable when the oscillators are heterogenous or nonidentical. In this manuscript, it is proven, mathematically, that the conclusions in those works are incorrect, and that stable synchronization states can, and do, exist in asymmetrically coupled homogeneous oscillators. Theoretical results are confirmed with numerical simulations.

10.
Structure ; 29(5): 479-487.e4, 2021 05 06.
Article in English | MEDLINE | ID: mdl-33453150

ABSTRACT

The type III secretion system (T3SS) is a virulence mechanism employed by Gram-negative pathogens. The T3SS forms a proteinaceous channel that projects a needle into the extracellular medium where it interacts with the host cell to deliver virulence factors. Enteropathogenic Escherichia coli (EPEC) is unique in adopting a needle extension to the T3SS-a filament formed by EspA-which is absolutely required for efficient colonization of the gut. Here, we describe the cryoelectron microscopy structure of native EspA filaments from EPEC at 3.6-Å resolution. Within the filament, positively charged residues adjacent to a hydrophobic groove line the lumen of the filament in a spiral manner, suggesting a mechanism of substrate translocation mediated via electrostatics. Using structure-guided mutagenesis, in vivo studies corroborate the role of these residues in secretion and translocation function. The high-resolution structure of the EspA filament could aid in structure-guided drug design of antivirulence therapeutics.


Subject(s)
Escherichia coli Proteins/chemistry , Type III Secretion Systems/chemistry , Amino Acid Substitution , Cryoelectron Microscopy , Enteropathogenic Escherichia coli , Escherichia coli Proteins/genetics , Escherichia coli Proteins/metabolism , HeLa Cells , Humans , Protein Conformation , Type III Secretion Systems/genetics , Type III Secretion Systems/metabolism
11.
mSystems ; 5(3)2020 Jun 02.
Article in English | MEDLINE | ID: mdl-32487743

ABSTRACT

Enteropathogenic Escherichia coli (EPEC) causes severe diarrheal disease and is present globally. EPEC virulence requires a bacterial type III secretion system to inject >20 effector proteins into human intestinal cells. Three effectors travel to mitochondria and modulate apoptosis; however, the mechanisms by which effectors control apoptosis from within mitochondria are unknown. To identify and quantify global changes in mitochondrial proteolysis during infection, we applied the mitochondrial terminal proteomics technique mitochondrial stable isotope labeling by amino acids in cell culture-terminal amine isotopic labeling of substrates (MS-TAILS). MS-TAILS identified 1,695 amino N-terminal peptides from 1,060 unique proteins and 390 N-terminal peptides from 215 mitochondrial proteins at a false discovery rate of 0.01. Infection modified 230 cellular and 40 mitochondrial proteins, generating 27 cleaved mitochondrial neo-N termini, demonstrating altered proteolytic processing within mitochondria. To distinguish proteolytic events specific to EPEC from those of canonical apoptosis, we compared mitochondrial changes during infection with those reported from chemically induced apoptosis. During infection, fewer than half of all mitochondrial cleavages were previously described for canonical apoptosis, and we identified nine mitochondrial proteolytic sites not previously reported, including several in proteins with an annotated role in apoptosis, although none occurred at canonical Asp-Glu-Val-Asp (DEVD) sites associated with caspase cleavage. The identification and quantification of novel neo-N termini evidences the involvement of noncaspase human or EPEC protease(s) resulting from mitochondrial-targeting effectors that modulate cell death upon infection. All proteomics data are available via ProteomeXchange with identifier PXD016994IMPORTANCE To our knowledge, this is the first study of the mitochondrial proteome or N-terminome during bacterial infection. Identified cleavage sites that had not been previously reported in the mitochondrial N-terminome and that were not generated in canonical apoptosis revealed a pathogen-specific strategy to control human cell apoptosis. These data inform new mechanisms of virulence factors targeting mitochondria and apoptosis during infection and highlight how enteropathogenic Escherichia coli (EPEC) manipulates human cell death pathways during infection, including candidate substrates of an EPEC protease within mitochondria. This understanding informs the development of new antivirulence strategies against the many human pathogens that target mitochondria during infection. Therefore, mitochondrial stable isotope labeling by amino acids in cell culture-terminal amine isotopic labeling of substrates (MS-TAILS) is useful for studying other pathogens targeting human cell compartments.

12.
Cell Host Microbe ; 27(6): 909-921.e5, 2020 06 10.
Article in English | MEDLINE | ID: mdl-32289261

ABSTRACT

Immunoglobulin (Ig) A controls host-microbial homeostasis in the gut. IgA recognition of beneficial bacteria is decreased in acutely undernourished children, but the factors driving these changes in IgA targeting are unknown. Child undernutrition is a global health challenge that is exacerbated by poor sanitation and intestinal inflammation. To understand how nutrition impacts immune-microbe interactions, we used a mouse model of undernutrition with or without fecal-oral exposure and assessed IgA-bacterial targeting from weaning to adulthood. In contrast to healthy control mice, undernourished mice fail to develop IgA recognition of intestinal Lactobacillus. Glycan-mediated interactions between Lactobacillus and host antibodies are lost in undernourished mice due to rapid bacterial adaptation. Lactobacillus adaptations occur in direct response to nutritional pressure, independently of host IgA, and are associated with reduced mucosal colonization and with bacterial mutations in carbohydrate processing genes. Together these data indicate that diet-driven bacterial adaptations shape IgA recognition in the gut.


Subject(s)
Bacteria/metabolism , Gastrointestinal Microbiome/immunology , Host Microbial Interactions/immunology , Immunoglobulin A/immunology , Nutritional Status , Symbiosis/physiology , Adult , Animals , Bacteria/genetics , DNA-Binding Proteins/genetics , Diet , Feces/microbiology , Homeostasis , Humans , Inflammation , Intestine, Small , Lactobacillus/physiology , Mice , Mice, Knockout , Polysaccharides , Sugars/metabolism
13.
Curr Opin Microbiol ; 54: 67-76, 2020 04.
Article in English | MEDLINE | ID: mdl-32058947

ABSTRACT

Enteropathogenic Escherichia coli (EPEC) is an important cause of infant diarrhea and mortality worldwide. The locus of enterocyte effacement (LEE) pathogenicity island in the EPEC genome encodes a type 3 secretion system (T3SS). This nanomachine directly injects a sophisticated arsenal of effectors into host cells, which is critical for EPEC pathogenesis. To colonize the gut mucosa, EPEC alters its gene expression in response to host environmental signals. Regulation of the LEE has been studied extensively, revealing key mechanisms of transcriptional regulation, and more recently at the posttranscriptional and posttranslational levels. Moreover, the T3SS assembly and secretion is a highly coordinated process that ensures hierarchical delivery of effectors upon cell contact. EPEC effectors and virulence factors not only manipulate host cellular processes, but also modulate effector translocation by controlling T3SS formation. In this review, we focus on the regulation of EPEC virulence genes and modulation of effector secretion and translocation.


Subject(s)
Enteropathogenic Escherichia coli/genetics , Enteropathogenic Escherichia coli/pathogenicity , Escherichia coli Infections/microbiology , Escherichia coli Proteins/metabolism , Type III Secretion Systems/metabolism , Virulence Factors/metabolism , Animals , Enteropathogenic Escherichia coli/metabolism , Escherichia coli Proteins/genetics , Gene Expression Regulation, Bacterial , Genomic Islands , Host Microbial Interactions , Host-Pathogen Interactions , Humans , Molecular Chaperones/metabolism , Type III Secretion Systems/genetics , Virulence/genetics , Virulence Factors/genetics
14.
J Sci Food Agric ; 99(10): 4580-4592, 2019 Aug 15.
Article in English | MEDLINE | ID: mdl-30891763

ABSTRACT

BACKGROUND: In red sparkling winemaking it is essential to obtain base wines with moderate alcohol content, adequate mouthfeel and color intensity. The aim of this work was to study oenological techniques to obtain adequate base wines for production of red sparkling wine by traditional methods: pre-fermentative cold maceration with dry ice and délestage with premature grapes; and sugar reduction in must and partial dealcoholisation of wine with mature grapes. The effect on oenological parameters, e.g. phenolic content, foam and sensory characteristics, was studied in sparkling wines aged on the lees in bottles for 9 months followed by aging for12 months in bottles after disgorging. RESULTS: Pre-fermentative cold maceration was the only treatment that increased the content of anthocyanins in sparkling wines at both stages of aging. Sparkling wines elaborated using délestage showed the highest mean values of the degree of polymerization of proanthocyanidins. Sparkling wines from mature grapes were given higher valuation in the gustatory phase. Sparkling wines elaborated using pre-fermentative cold maceration were given the highest valuation for foam quality. CONCLUSIONS: Pre-fermentative cold maceration is a viable alternative to common techniques for increasing the anthocyanin content in wines from premature grapes. It would therefore be a good option to obtain adequate base wines. © 2019 Society of Chemical Industry.


Subject(s)
Alcoholic Beverages/analysis , Food Handling/methods , Phenols/chemistry , Wine/analysis , Fermentation , Humans , Proanthocyanidins/chemistry , Taste , Time Factors , Vitis/chemistry
15.
Drug Dev Res ; 80(1): 68-85, 2019 02.
Article in English | MEDLINE | ID: mdl-30255943

ABSTRACT

The emergence of antibiotic resistance drives an essential race against time to reveal new molecular structures capable of addressing this alarming global health problem. Snake venoms are natural catalogs of multifunctional toxins and privileged frameworks, which serve as potential templates for the inspiration of novel treatment strategies for combating antibiotic resistant bacteria. Phospholipases A2 (PLA2 s) are one of the main classes of antibacterial biomolecules, with recognized therapeutic value, found in these valuable secretions. Recently, a number of biomimetic oligopeptides based on small fragments of primary structure from PLA2 toxins has emerged as a meaningful opportunity to overcome multidrug-resistant clinical isolates. Thus, this review will highlight the biochemical and structural properties of antibacterial PLA2 s and peptides thereof, as well as their possible molecular mechanisms of action and key roles in development of effective therapeutic strategies. Chemical strategies possibly useful to convert antibacterial peptides from PLA2 s to efficient drugs will be equally addressed.


Subject(s)
Drug Resistance, Microbial/drug effects , Phospholipases A2/isolation & purification , Phospholipases A2/pharmacology , Snake Venoms/enzymology , Snake Venoms/pharmacology , Animals , Antimicrobial Cationic Peptides/isolation & purification , Antimicrobial Cationic Peptides/pharmacology , Drug Resistance, Microbial/physiology , Humans
16.
Phys Rev E ; 98(1-1): 012203, 2018 Jul.
Article in English | MEDLINE | ID: mdl-30110752

ABSTRACT

Precise time dissemination and synchronization have been some of the most important technological tasks for several centuries. Since the early 1800s, it was realized that precise time-keeping devices having the same stable frequency and precisely synchronized can have important applications in navigation. In modern times, satellite-based global positioning and navigation systems such as the GPS use the same principle. However, even the most sophisticated satellite navigation equipment cannot operate in every environment. In response to this need, we present a computational and analytical study of a network-based model of a high-precision, inexpensive, coupled crystal oscillator system and timing (CCOST) device. A bifurcation analysis (carried out by the authors in a related publication) [Buono et al., SIAM J. Appl. Dyn. Syst. 17, 1310 (2018)1536-004010.1137/16M1066154] of the network dynamics shows a wide variety of collective patterns, mainly various forms of discrete rotating waves and synchronization patterns. Results from computer simulations seem to indicate that, among all patterns, the standard traveling wave pattern in which consecutive crystals oscillate out of phase by 2π/N, where N is the network size, leads to phase drift error that decreases as 1/N as opposed to 1/sqrt[N] for an uncoupled ensemble. The results should provide guidelines for future experiments, design, and fabrication tasks.

17.
J Exerc Rehabil ; 14(3): 349-355, 2018 Jun.
Article in English | MEDLINE | ID: mdl-30018917

ABSTRACT

This study explored the relationship between motor functions and attention in children aged 4-5 years. A sample of 85 children was collected from a primary school (44 boys and 41 girls). We applied a standardized continuous attention performance test, the Kiddie Continuous Performance Test, under two conditions (sitting and balancing). Data were collected from two standardized balance tests, the Battelle and Pediatric Balance Scale. There was a significant relationship between attention and balance and gender differences that may condition the way to address balance issues in boys and girls. Gender should be considered when addressing balance problems to get efficient interventions. Balance skill may be a contributing factor in attention-deficit/hyperactivity disorder.

18.
Front Microbiol ; 8: 1065, 2017.
Article in English | MEDLINE | ID: mdl-28616012

ABSTRACT

[This corrects the article on p. 821 in vol. 8, PMID: 28533770.].

19.
Front Microbiol ; 8: 821, 2017.
Article in English | MEDLINE | ID: mdl-28533770

ABSTRACT

Wine originally emerged as a serendipitous mix of chemistry and biology, where microorganisms played a decisive role. From these ancient fermentations to the current monitored industrial processes, winegrowers and winemakers have been continuously changing their practices according to scientific knowledge and advances. A new enology direction is emerging and aiming to blend the complexity of spontaneous fermentations with industrial safety of monitored fermentations. In this context, wines with distinctive autochthonous peculiarities have a great acceptance among consumers, causing important economic returns. The concept of terroir, far from being a rural term, conceals a wide range of analytical parameters that are the basis of the knowledge-based enology trend. In this sense, the biological aspect of soils has been underestimated for years, when actually it contains a great microbial diversity. This soil-associated microbiota has been described as determinant, not only for the chemistry and nutritional properties of soils, but also for health, yield, and quality of the grapevine. Additionally, recent works describe the soil microbiome as the reservoir of the grapevine associated microbiota, and as a contributor to the final sensory properties of wines. To understand the crucial roles of microorganisms on the entire wine making process, we must understand their ecological niches, population dynamics, and relationships between 'microbiome- vine health' and 'microbiome-wine metabolome.' These are critical steps for designing precision enology practices. For that purpose, current metagenomic techniques are expanding from laboratories, to the food industry. This review focuses on the current knowledge about vine and wine microbiomes, with emphasis on their biological roles and the technical basis of next-generation sequencing pipelines. An overview of molecular and informatics tools is included and new directions are proposed, highlighting the importance of -omics technologies in wine research and industry.

20.
mBio ; 7(3)2016 06 21.
Article in English | MEDLINE | ID: mdl-27329750

ABSTRACT

UNLABELLED: Enteropathogenic Escherichia coli (EPEC) has the ability to antagonize host apoptosis during infection through promotion and inhibition of effectors injected by the type III secretion system (T3SS), but the total number of these effectors and the overall functional relationships between these effectors during infection are poorly understood. EspC produced by EPEC cleaves fodrin, paxillin, and focal adhesion kinase (FAK), which are also cleaved by caspases and calpains during apoptosis. Here we show the role of EspC in cell death induced by EPEC. EspC is involved in EPEC-mediated cell death and induces both apoptosis and necrosis in epithelial cells. EspC induces apoptosis through the mitochondrial apoptotic pathway by provoking (i) a decrease in the expression levels of antiapoptotic protein Bcl-2, (ii) translocation of the proapoptotic protein Bax from cytosol to mitochondria, (iii) cytochrome c release from mitochondria to the cytoplasm, (iv) loss of mitochondrial membrane potential, (v) caspase-9 activation, (vi) cleavage of procaspase-3 and (vii) an increase in caspase-3 activity, (viii) PARP proteolysis, and (ix) nuclear fragmentation and an increase in the sub-G1 population. Interestingly, EspC-induced apoptosis was triggered through a dual mechanism involving both independent and dependent functions of its EspC serine protease motif, the direct cleavage of procaspase-3 being dependent on this motif. This is the first report showing a shortcut for induction of apoptosis by the catalytic activity of an EPEC protein. Furthermore, this atypical intrinsic apoptosis appeared to induce necrosis through the activation of calpain and through the increase of intracellular calcium induced by EspC. Our data indicate that EspC plays a relevant role in cell death induced by EPEC. IMPORTANCE: EspC, an autotransporter protein with serine protease activity, has cytotoxic effects on epithelial cells during EPEC infection. EspC causes cytotoxicity by cleaving fodrin, a cytoskeletal actin-associated protein, and focal adhesion proteins (i.e., FAK); interestingly, these proteins are also cleaved during apoptosis and necrosis. Here we show that EspC is able to cause cell death, which is characterized by apoptosis: by dissecting the apoptotic pathway and considering that EspC is translocated by an injectisome, we found that EspC induces the mitochondrial apoptotic pathway. Remarkably, EspC activates this pathway by two distinct mechanisms-either by using or not using its serine protease motif. Thus, we show for the first time that this serine protease motif is able to cleave procaspase-3, thereby reaching the terminal stages of caspase cascade activation leading to apoptosis. Furthermore, this overlapped apoptosis appears to potentiate cell death through necrosis, where EspC induces calpain activation and increases intracellular calcium.


Subject(s)
Apoptosis , Calpain/metabolism , Caspase 3/metabolism , Caspases/metabolism , Enteropathogenic Escherichia coli/pathogenicity , Escherichia coli Proteins/metabolism , Necrosis , Cell Line , Epithelial Cells/microbiology , Epithelial Cells/physiology , Host-Pathogen Interactions , Humans , Proteolysis
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