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1.
Genome Biol ; 25(1): 128, 2024 05 21.
Article in English | MEDLINE | ID: mdl-38773499

ABSTRACT

BACKGROUND: Cellular iron homeostasis is regulated by iron regulatory proteins (IRP1 and IRP2) that sense iron levels (and other metabolic cues) and modulate mRNA translation or stability via interaction with iron regulatory elements (IREs). IRP2 is viewed as the primary regulator in the liver, yet our previous datasets showing diurnal rhythms for certain IRE-containing mRNAs suggest a nuanced temporal control mechanism. The purpose of this study is to gain insights into the daily regulatory dynamics across IRE-bearing mRNAs, specific IRP involvement, and underlying systemic and cellular rhythmicity cues in mouse liver. RESULTS: We uncover high-amplitude diurnal oscillations in the regulation of key IRE-containing transcripts in the liver, compatible with maximal IRP activity at the onset of the dark phase. Although IRP2 protein levels also exhibit some diurnal variations and peak at the light-dark transition, ribosome profiling in IRP2-deficient mice reveals that maximal repression of target mRNAs at this timepoint still occurs. We further find that diurnal regulation of IRE-containing mRNAs can continue in the absence of a functional circadian clock as long as feeding is rhythmic. CONCLUSIONS: Our findings suggest temporally controlled redundancy in IRP activities, with IRP2 mediating regulation of IRE-containing transcripts in the light phase and redundancy, conceivably with IRP1, at dark onset. Moreover, we highlight the significance of feeding-associated signals in driving rhythmicity. Our work highlights the dynamic nature and regulatory complexity in a metabolic pathway that had previously been considered well-understood.


Subject(s)
Circadian Rhythm , Iron Regulatory Protein 1 , Iron Regulatory Protein 2 , Iron , Liver , RNA, Messenger , Animals , Iron Regulatory Protein 1/metabolism , Iron Regulatory Protein 1/genetics , Iron Regulatory Protein 2/metabolism , Iron Regulatory Protein 2/genetics , Circadian Rhythm/genetics , RNA, Messenger/metabolism , RNA, Messenger/genetics , Mice , Liver/metabolism , Iron/metabolism , Gene Expression Regulation , Response Elements , Mice, Inbred C57BL , Male , Feeding Behavior
2.
Sci Adv ; 8(40): eabq4469, 2022 10 07.
Article in English | MEDLINE | ID: mdl-36197975

ABSTRACT

Iron is mostly devoted to the hemoglobinization of erythrocytes for oxygen transport. However, emerging evidence points to a broader role for the metal in hematopoiesis, including the formation of the immune system. Iron availability in mammalian cells is controlled by iron-regulatory protein 1 (IRP1) and IRP2. We report that global disruption of both IRP1 and IRP2 in adult mice impairs neutrophil development and differentiation in the bone marrow, yielding immature neutrophils with abnormally high glycolytic and autophagic activity, resulting in neutropenia. IRPs promote neutrophil differentiation in a cell intrinsic manner by securing cellular iron supply together with transcriptional control of neutropoiesis to facilitate differentiation to fully mature neutrophils. Unlike neutrophils, monocyte count was not affected by IRP and iron deficiency, suggesting a lineage-specific effect of iron on myeloid output. This study unveils the previously unrecognized importance of IRPs and iron metabolism in the formation of a major branch of the innate immune system.


Subject(s)
Bone Marrow , Neutrophils , Animals , Bone Marrow/metabolism , Hematopoiesis , Hemoglobins/metabolism , Homeostasis , Iron/metabolism , Iron Regulatory Protein 1/metabolism , Iron-Regulatory Proteins/metabolism , Mammals/metabolism , Mice , Neutrophils/metabolism , Oxygen/metabolism
5.
Mol Cell ; 67(6): 962-973.e5, 2017 Sep 21.
Article in English | MEDLINE | ID: mdl-28918898

ABSTRACT

In the endoplasmic reticulum (ER), Ero1 catalyzes disulfide bond formation and promotes glutathione (GSH) oxidation to GSSG. Since GSSG cannot be reduced in the ER, maintenance of the ER glutathione redox state and levels likely depends on ER glutathione import and GSSG export. We used quantitative GSH and GSSG biosensors to monitor glutathione import into the ER of yeast cells. We found that glutathione enters the ER by facilitated diffusion through the Sec61 protein-conducting channel, while oxidized Bip (Kar2) inhibits transport. Increased ER glutathione import triggers H2O2-dependent Bip oxidation through Ero1 reductive activation, which inhibits glutathione import in a negative regulatory loop. During ER stress, transport is activated by UPR-dependent Ero1 induction, and cytosolic glutathione levels increase. Thus, the ER redox poise is tuned by reciprocal control of glutathione import and Ero1 activation. The ER protein-conducting channel is permeable to small molecules, provided the driving force of a concentration gradient.


Subject(s)
Endoplasmic Reticulum/enzymology , Fungal Proteins/metabolism , Glutathione/metabolism , Glycoproteins/metabolism , HSP70 Heat-Shock Proteins/metabolism , Oxidoreductases Acting on Sulfur Group Donors/metabolism , SEC Translocation Channels/metabolism , Saccharomyces cerevisiae Proteins/metabolism , Saccharomyces cerevisiae/metabolism , Cytosol/enzymology , Facilitated Diffusion , Fungal Proteins/genetics , Glutathione Disulfide/metabolism , Glycoproteins/genetics , HSP70 Heat-Shock Proteins/genetics , Hydrogen Peroxide/metabolism , Intracellular Membranes/enzymology , Membrane Proteins/genetics , Membrane Proteins/metabolism , Oxidation-Reduction , Oxidoreductases Acting on Sulfur Group Donors/genetics , SEC Translocation Channels/genetics , Saccharomyces cerevisiae/genetics , Saccharomyces cerevisiae Proteins/genetics , Signal Transduction , Time Factors , Unfolded Protein Response
6.
Nat Commun ; 8: 14791, 2017 03 24.
Article in English | MEDLINE | ID: mdl-28337980

ABSTRACT

Yeast lacks dedicated photoreceptors; however, blue light still causes pronounced oscillations of the transcription factor Msn2 into and out of the nucleus. Here we show that this poorly understood phenomenon is initiated by a peroxisomal oxidase, which converts light into a hydrogen peroxide (H2O2) signal that is sensed by the peroxiredoxin Tsa1 and transduced to thioredoxin, to counteract PKA-dependent Msn2 phosphorylation. Upon H2O2, the nuclear retention of PKA catalytic subunits, which contributes to delayed Msn2 nuclear concentration, is antagonized in a Tsa1-dependent manner. Conversely, peroxiredoxin hyperoxidation interrupts the H2O2 signal and drives Msn2 oscillations by superimposing on PKA feedback regulation. Our data identify a mechanism by which light could be sensed in all cells lacking dedicated photoreceptors. In particular, the use of H2O2 as a second messenger in signalling is common to Msn2 oscillations and to light-induced entrainment of circadian rhythms and suggests conserved roles for peroxiredoxins in endogenous rhythms.


Subject(s)
Hydrogen Peroxide/metabolism , Light Signal Transduction , Peroxidases/metabolism , Peroxiredoxins/metabolism , Saccharomyces cerevisiae Proteins/metabolism , Saccharomyces cerevisiae/metabolism , Biocatalysis/radiation effects , Cell Nucleus/metabolism , Cell Nucleus/radiation effects , Cyclic AMP-Dependent Protein Kinases/metabolism , Light , Light Signal Transduction/radiation effects , Models, Biological , Phosphorylation/radiation effects , Protein Subunits/metabolism , Protein Transport/radiation effects , Saccharomyces cerevisiae/radiation effects
7.
Cell ; 166(1): 140-51, 2016 Jun 30.
Article in English | MEDLINE | ID: mdl-27264606

ABSTRACT

Caloric restriction (CR) extends the lifespan of flies, worms, and yeast by counteracting age-related oxidation of H2O2-scavenging peroxiredoxins (Prxs). Here, we show that increased dosage of the major cytosolic Prx in yeast, Tsa1, extends lifespan in an Hsp70 chaperone-dependent and CR-independent manner without increasing H2O2 scavenging or genome stability. We found that Tsa1 and Hsp70 physically interact and that hyperoxidation of Tsa1 by H2O2 is required for the recruitment of the Hsp70 chaperones and the Hsp104 disaggregase to misfolded and aggregated proteins during aging, but not heat stress. Tsa1 counteracted the accumulation of ubiquitinated aggregates during aging and the reduction of hyperoxidized Tsa1 by sulfiredoxin facilitated clearance of H2O2-generated aggregates. The data reveal a conceptually new role for H2O2 signaling in proteostasis and lifespan control and shed new light on the selective benefits endowed to eukaryotic peroxiredoxins by their reversible hyperoxidation.


Subject(s)
HSP70 Heat-Shock Proteins/metabolism , Hydrogen Peroxide/metabolism , Longevity , Peroxidases/metabolism , Protein Folding , Saccharomyces cerevisiae Proteins/metabolism , Saccharomyces cerevisiae/metabolism , Animals , Caloric Restriction , Genomic Instability , Heat-Shock Proteins/metabolism , Humans , Oxidation-Reduction , Protein Aggregates , Saccharomyces cerevisiae/cytology , Signal Transduction
8.
Antioxid Redox Signal ; 14(11): 2071-80, 2011 Jun.
Article in English | MEDLINE | ID: mdl-21083423

ABSTRACT

Peroxiredoxins constitute a major family of cysteine-based peroxide-scavenging enzymes. They carry an intriguing redox switch by undergoing substrate-mediated inactivation via overoxidation of their catalytic cysteine to the sulfinic acid form that is reverted by reduction catalyzed by the sulfinic acid reductase sulfiredoxin (Srx). The biological significance of such inactivation is not understood, nor is the function of Srx1. To address this question, we generated a mouse line with a null deletion of the Srx1-encoding Srxn1 gene. We show here that Srxn1(-/-) mice are perfectly viable and do not suffer from any apparent defects under laboratory conditions, but have an abnormal response to lipopolysaccharide that manifests by increased mortality during endotoxic shock. Microarray-based mRNA profiles show that although the response of Srxn1(-/-) mice to lipopolysaccharide is typical, spanning all spectrum and all pathways of innate immunity, it is delayed by several hours and remains intense when the response of Srxn1(+/+) mice has already dissipated. These data indicate that Srx1 activity protects mice from the lethality of endotoxic shock, adding this enzyme to other host factors, as NRF2 and peroxiredoxin 2, which by regulating cellular reactive oxygen species levels act as important modifiers in the pathogenesis of sepsis.


Subject(s)
Lipopolysaccharides/pharmacology , Oxidoreductases Acting on Sulfur Group Donors/metabolism , Shock, Septic/metabolism , Alanine Transaminase/blood , Animals , Aspartate Aminotransferases/blood , Cells, Cultured , Female , Genetic Engineering , Homeodomain Proteins/metabolism , Immunity, Innate , Kaplan-Meier Estimate , Male , Mice , Mice, Inbred C57BL , Mice, Knockout , Oxidoreductases Acting on Sulfur Group Donors/genetics , Reactive Oxygen Species/metabolism , Shock, Septic/immunology , Signal Transduction , Transcription, Genetic
9.
Circulation ; 117(14): 1778-86, 2008 Apr 08.
Article in English | MEDLINE | ID: mdl-18378612

ABSTRACT

BACKGROUND: Ca(2+) release from the sarcoplasmic reticulum via the ryanodine receptor (RyR2) activates cardiac myocyte contraction. An important regulator of RyR2 function is FKBP12.6, which stabilizes RyR2 in the closed state during diastole. Beta-adrenergic stimulation has been suggested to dissociate FKBP12.6 from RyR2, leading to diastolic sarcoplasmic reticulum Ca(2+) leakage and ventricular tachycardia (VT). We tested the hypothesis that FKBP12.6 overexpression in cardiac myocytes can reduce susceptibility to VT in stress conditions. METHODS AND RESULTS: We developed a mouse model with conditional cardiac-specific overexpression of FKBP12.6. Transgenic mouse hearts showed a marked increase in FKBP12.6 binding to RyR2 compared with controls both at baseline and on isoproterenol stimulation (0.2 mg/kg i.p.). After pretreatment with isoproterenol, burst pacing induced VT in 10 of 23 control mice but in only 1 of 14 transgenic mice (P<0.05). In isolated transgenic myocytes, Ca(2+) spark frequency was reduced by 50% (P<0.01), a reduction that persisted under isoproterenol stimulation, whereas the sarcoplasmic reticulum Ca(2+) load remained unchanged. In parallel, peak I(Ca,L) density decreased by 15% (P<0.01), and the Ca(2+) transient peak amplitude decreased by 30% (P<0.001). A 33.5% prolongation of the caffeine-evoked Ca(2+) transient decay was associated with an 18% reduction in the Na(+)-Ca(2+) exchanger protein level (P<0.05). CONCLUSIONS: Increased FKBP12.6 binding to RyR2 prevents triggered VT in normal hearts in stress conditions, probably by reducing diastolic sarcoplasmic reticulum Ca(2+) leak. This indicates that the FKBP12.6-RyR2 complex is an important candidate target for pharmacological prevention of VT.


Subject(s)
Myocytes, Cardiac/metabolism , Ryanodine Receptor Calcium Release Channel/physiology , Tachycardia, Ventricular/prevention & control , Tacrolimus Binding Proteins/physiology , Action Potentials , Adrenergic beta-Agonists/toxicity , Animals , Calcium Signaling , Cardiac Pacing, Artificial , Catecholamines/physiology , Doxycycline/pharmacology , Isoproterenol/toxicity , Mice , Mice, Inbred C57BL , Mice, Transgenic , Myocardial Contraction , Phosphorylation , Protein Conformation , Protein Processing, Post-Translational , Recombinant Fusion Proteins/biosynthesis , Recombinant Fusion Proteins/physiology , Ryanodine Receptor Calcium Release Channel/chemistry , Sarcoplasmic Reticulum/metabolism , Tacrolimus Binding Proteins/biosynthesis , Tacrolimus Binding Proteins/genetics , Up-Regulation/drug effects
10.
J Biotechnol ; 116(2): 145-51, 2005 Mar 16.
Article in English | MEDLINE | ID: mdl-15664078

ABSTRACT

Functional genomic analysis is a challenging step in the so-called post-genomic field. Identification of potential targets using large-scale gene expression analysis requires functional validation to identify those that are physiologically relevant. Genetically modified cell models are often used for this purpose allowing up- or down-expression of selected targets in a well-defined and if possible highly differentiated cell type. However, the generation of such models remains time-consuming and expensive. In order to alleviate this step, we developed a strategy aimed at the rapid and efficient generation of genetically modified cell lines with conditional, inducible expression of various target genes. Efficient knock-in of various constructs, called targeted transgenesis, in a locus selected for its permissibility to the tet inducible system, was obtained through the stimulation of site-specific homologous recombination by the meganuclease I-SceI. Our results demonstrate that targeted transgenesis in a reference inducible locus greatly facilitated the functional analysis of the selected recombinant cells. The efficient screening strategy we have designed makes possible automation of the transfection and selection steps. Furthermore, this strategy could be applied to a variety of highly differentiated cells.


Subject(s)
Chromosome Mapping/methods , Epithelial Cells/physiology , Gene Expression Profiling/methods , Gene Targeting/methods , Gene Transfer Techniques , Recombinant Proteins/biosynthesis , Animals , Cell Differentiation/genetics , Cell Line , Rats
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