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1.
Animals (Basel) ; 14(6)2024 Mar 08.
Article in English | MEDLINE | ID: mdl-38539928

ABSTRACT

Bergmann's and Allen's rules are two classic ecogeographic rules concerning the physiological mechanisms employed by endotherm vertebrates for heat conservation in cold environments, which correlate with adaptive morphological changes. Thus, larger body sizes (Bergmann's rule) and shorter appendages and limbs (Allen's rule) are expected in mammals inhabiting cold environments (higher latitudes). Both rules may also apply to elevational gradients, due to the decrease in external temperature as elevation increases. In this study, we evaluated whether these patterns were true in two coexisting sigmodontine rodents across an elevational gradient in central Chile. We analyzed whether the size of the skull, body, and appendages of Abrothrix olivacea (n = 70) and Phyllotis darwini (n = 58) correlated with elevation, as predicted by these rules in a range between 154 and 2560 m. Our data revealed weak support for the Bergmann and Allen predictions. Moreover, we observed opposite patterns when expectations of Bergmann's rules were evaluated, whereas Allen's rule just fitted for ear size in both rodent species. Our results suggest that morphological changes (cranial, body, and appendage sizes) may play a minor role in the thermoregulation of these two species at high elevations, although behavioral strategies could be more critical. Other ecological and environmental variables could explain the morphological trends observed in our study. These hypotheses should be assessed in future studies to consider the relative contribution of morphology, behavior, and physiological mechanisms to the thermal adaptation of these two rodent species at high elevations.

2.
Sci Rep ; 13(1): 2207, 2023 02 07.
Article in English | MEDLINE | ID: mdl-36750620

ABSTRACT

The Andean mountains stand out for their striking species richness and endemicity that characterize many emblematic Neotropical clades distributed in or around these mountains. The radiation of the Sigmodontinae subfamily, the most diversified mammalian group in the Neotropics, has been historically related to Andean orogenesis. We aim to evaluate this interplay between geological processes and biological responses through the diversification dynamics, the biogeographical history, and the range evolution of the subfamily. For these, we built the most comprehensive phylogeny and gathered 14,836 occurrences for the subfamily. We identified one shift in the speciation rate in the genus Akodon, which suffered their Andean radiation after the arrival of non-Andean ancestors. Our biogeographic analyses show multiple dispersal paths throughout the evolution that allowed this subfamily to colonize all Neotropics. The Northern Andes and Central-Southern Andes were the most important sources of diversity. In addition, the Central-Southern Andes were the most relevant sink, receiving the highest number of lineages. The Andean region exhibited higher speciation and turnover rates than non-Andean regions. Thus, our results support the crucial role of the Andean Mountains in the Sigmodontinae radiation, acting as a "macroevolutionary cradle" and "species attractor" for several sigmodontine lineages at different times, and as a "species pump" becoming the biogeographic source of multiple widely distributed neotropical lineages. Then, complex macroevolutionary dynamics would explain these rodents' high extant Andean diversity and their wide distribution in the Neotropics.


Subject(s)
Rodentia , Sigmodontinae , Animals , Phylogeography , Arvicolinae , Phylogeny , Genetic Speciation
3.
Sci Rep ; 12(1): 18106, 2022 10 27.
Article in English | MEDLINE | ID: mdl-36302809

ABSTRACT

Body size is a key organismal trait. However, the environmental and evolutionary factors that drive body size patterns at the interspecific level remain unclear. Here, we explored these relationships between phenotype-environment using neotropical frogs of Pristimantis, the world's most diverse vertebrate genus. We analyzed: (a) whether this group follows the Rensch's rule, a trend of sexual size dimorphism (SSD) to increase with size when males are the larger sex; (b) whether environmental constraints have influenced body size variation; and (c) how the rates of body size evolution have varied over time. Analyses were based on two information sources, the first one including body sizes of ~ 85% (495 species) of known species in the genus, and a second one incorporating molecular phylogenetic information for 257 species. Our results showed that all Pristimantis species exhibited marked SSD but did not follow Rensch's rule. We found that the models that best explained body size in males, females, and SSD contained environmental variations in temperature, precipitation, and elevation as predictors. In turn, body size has evolved toward an optimum, with a decelerating rate of evolution differentiated between the large Pristimantis clades.


Subject(s)
Anura , Sex Characteristics , Animals , Male , Female , Phylogeny , Body Size , Anura/genetics , Phenotype
4.
Zootaxa ; 4750(4): zootaxa.4750.4.3, 2020 Mar 13.
Article in English | MEDLINE | ID: mdl-32230445

ABSTRACT

We describe two new species of the genus Pristimantis from the western margin of the Eastern Cordillera of Colombia. The species have a sympatric distribution and are found in the humid tropical forests of the lower part of the Tamá National Natural Park (PNN Tamá) and its buffer zone. The new species were described from morphological comparisons and phylogenetic reconstruction from the sequencing of three mitochondrial and two nuclear genes. With these two new species, the number of Pristimantis species known in the department of Norte de Santander has increased to 10. In addition, we included new sequences for the species P. anolirex, P. nicefori, P. mondolfii, and P. yukpa. Our explorations in the last decade indicate that there are probably between five and 10 species that have not been described in the northeastern part of Colombia, especially in areas where the armed conflict has predominated in the last five decades.


Subject(s)
Anura , Forests , Animals , Colombia , Parks, Recreational , Phylogeny
5.
Viruses ; 11(9)2019 09 12.
Article in English | MEDLINE | ID: mdl-31547341

ABSTRACT

Small mammals present in areas where hantavirus cardiopulmonary syndrome (HCPS) cases had occurred in central and southern Chile were captured and analyzed to evaluate the abundance of rodents and seroprevalence rates of antibodies to Andes orthohantavirus (ANDV). Sampling areas ranged from the Coquimbo to Aysén regions (30-45° S approx.) regions. Ninety-two sites in peridomestic and countryside areas were evaluated in 19 years of sampling. An antibody against ANDV was detected by strip immunoassay in 58 of 1847 specimens captured using Sherman traps. Of the eleven species of rodents sampled, Abrothrix olivacea, Oligoryzomys longicaudatus and Abrothrix hirta were the most frequently trapped. O. longicaudatus had the highest seropositivity rate, and by logistic regression analysis, O. longicaudatus of at least 60 g had 80% or higher probability to be seropositive. Sex, age and wounds were significantly related to seropositivity only for O. longicaudatus. Across administrative regions, the highest seropositivity was found in the El Maule region (34.8-36.2° S), and the highest number of HCPS cases was registered in the Aysén region. Our results highlight the importance of long term and geographically extended studies, particularly for highly fluctuating pathogens and their reservoirs, to understand the implications of the dynamics and transmission of zoonotic diseases in human populations.


Subject(s)
Antibodies, Viral/blood , Disease Reservoirs/virology , Hantavirus Infections/veterinary , Rodent Diseases/virology , Rodentia/virology , Zoonoses/transmission , Animal Distribution , Animals , Chile/epidemiology , Female , Geography , Orthohantavirus , Hantavirus Infections/epidemiology , Hantavirus Pulmonary Syndrome/transmission , Humans , Male , Rodent Diseases/epidemiology , Rodent Diseases/transmission , Seroepidemiologic Studies , Zoonoses/epidemiology , Zoonoses/virology
6.
J Hered ; 110(6): 651-661, 2019 10 10.
Article in English | MEDLINE | ID: mdl-31420661

ABSTRACT

In this study, we quantified the 3 pivotal genetic processes (i.e., genetic diversity, spatial genetic structuring, and migration) necessary for a better biological understanding and management of the singular "living-fossil" and near-threatened mouse opossum marsupial Dromiciops gliroides, the "Monito del Monte," in south-central Chile. We used 11 microsatellite loci to genotype 47 individuals distributed on the mainland and northern Chiloé Island. Allelic richness, observed and expected heterozygosity, inbreeding coefficient, and levels of genetic differentiation were estimated. The genetic structure was assessed based on Bayesian clustering methods. In addition, potential migration scenarios were evaluated based on a coalescent theory framework and Bayesian approach to parameter estimations. Microsatellites revealed moderate to high levels of genetic diversity across sampled localities. Moreover, such molecular markers suggested that at least 2 consistent genetic clusters could be identified along the D. gliroides distribution ("Northern" and "Southern" cluster). However, general levels of genetic differentiation observed among localities and between the 2 genetic clusters were relatively low. Migration analyses showed that the most likely routes of migration of D. gliroides occurred 1) from the Southern cluster to the Northern cluster and 2) from the Mainland to Chiloé Island. Our results could represent critical information for future conservation programs and for a recent proposal about the taxonomic status of this unique mouse opossum marsupial.


Subject(s)
Animal Migration , Genetic Variation , Genetics, Population , Marsupialia/genetics , Alleles , Animals , Chile , Genotype , Microsatellite Repeats
7.
PeerJ ; 7: e6955, 2019.
Article in English | MEDLINE | ID: mdl-31149405

ABSTRACT

The temperate rainforests of southern Chile, a recognized biodiversity hotspot, were significantly affected by Pleistocene glacial cycles in their southern portion and have been severely disrupted mainly due to recent human activities. Additionally, the landscape is characterized by a series of potential barriers to gene flow, such as the Chacao Channel, Cordillera de Piuche in Chiloé and both the Ancud and the Corcovado gulfs. We used mitochondrial DNA sequences and microsatellite data across several populations to evaluate the genetic variability and structure of the sigmodontine rodent Abrothrix olivacea brachiotis, one of the most common species of small mammals and an inhabitant of these biodiverse forests. Sequencing data showed that along with the recovery of high haplotype variation for this species, there was a low nucleotide diversity between haplotypes, showing no genetic differences between the Chiloé Island and continental populations in southern Chile or through any other geographic barrier in the study area. However, microsatellite data exhibited some level of population structuring. The most evident clusterings were those of the Chiloé Island and that of North Patagonia. These findings are corroborated by a barrier analysis that showed a genetic barrier in the latter areas, whereas the Chacao Channel was not a significant barrier for this rodent. Overall, the genetic variability and structure of A. o. brachiotis was concordant with historical factors, such as the Last Glacial Maximum and the presence of geographic elements that isolate populations.

8.
PLoS One ; 12(8): e0181026, 2017.
Article in English | MEDLINE | ID: mdl-28809924

ABSTRACT

One of the most characteristic and abundant amphibian taxa of South American temperate forests is Eupsophus. The ten currently recognized species of the genus have been divided in two species groups, roseus and vertebralis, but most of them, eight, belong to the roseus group. Recent phylogeographic and phylogenetic studies have suggested that species diversity of the roseus group could be underestimated. An examination of the literature shows that species of the roseus group exhibit high levels of variation in their external characteristics, particularly those used as diagnostic characters, which compromises their taxonomy and hinders their field recognition. High levels of variation were also observed in several new populations of the roseus group discovered in southern Chile (36°-40°S), which could not be identified to the species level by their external characteristics. On the other hand, the literature reveals a scarse karyotype differentiation and a high bioacoustic uniformity among the species of the roseus group. We performed a Bayesian phylogenetic analysis using mitochondrial and nuclear genes to reevaluate the species diversity of the roseus group, including all the nominal species of Eupsophus and new populations. This analysis was complemented with three species delimitation approaches, General Mixed Yule Coalescent, multi-rate Poisson Tree Process and Automatic Barcode Gap Discovery. We favored a conservative delimitation of only four species for the roseus group, a result more consistent with the distribution of pairwise genetic distances, and the available chromosome and bioacoustic evidence. The four recognized lineages, which have nearly completely allopatric distributions, are named after the earliest nominal species that they include, but because high levels of phenotypic variation, they are not diagnosable by consistent differences in external morphology. We discuss the implications of this new proposal for the taxonomy and conservation of the genus, and the possible causes of the difficulty to estimate its species diversity.


Subject(s)
Anura/classification , Forests , Animals , Anura/genetics , Bayes Theorem , Genetic Speciation , Phenotype , Phylogeny , Sequence Analysis, DNA , South America , Species Specificity
9.
PLoS One ; 12(7): e0180231, 2017.
Article in English | MEDLINE | ID: mdl-28672032

ABSTRACT

We evaluated if two sigmodontine rodent taxa (Abrothrix olivacea and Phyllotis darwini) from the Andes and Coastal mountaintops of central Chile, experienced distributional shifts due to altitudinal movements of habitat and climate change during and after the Last Glacial Maximum (LGM). We tested the hypothesis that during LGM populations of both species experienced altitudinal shifts from the Andes to the lowlands and the coastal Cordillera, and then range retractions during interglacial towards higher elevations in the Andes. These distributional shifts may have left remnants populations on the mountaintops. We evaluated the occurrence of intraspecific lineages for each species, to construct distribution models at LGM and at present, as extreme climatic conditions for each lineage. Differences in distribution between extreme climatic conditions were interpreted as post-glacial distributional shifts. Abrothrix olivacea displayed a lineage with shared sequences between both mountain systems, whereas a second lineage was restricted to the Andes. A similar scenario of panmictic unit in the past was recovered for A. olivacea in the Andes, along with an additional unit that included localities from the rest of its distribution. For P. darwini, both lineages recovered were distributed in coastal and Andean mountain ranges at present as well, and structuring analyses for this species recovered coastal and Andean localities as panmictic units in the past. Niche modeling depicted differential postglacial expansions in the recovered lineages. Results suggest that historical events such as LGM triggered the descending of populations to Andean refuge areas (one of the A. olivacea's lineages), to the lowlands, and to the coastal Cordillera. Backward movements of populations after glacial retreats may have left isolates on mountaintops of the coastal Cordillera, suggesting that current species distribution would be the outcome of climate change and habitat reconfiguration after LGM.


Subject(s)
Ecosystem , Phylogeography , Rodentia/classification , Animals , Bayes Theorem , Chile , Genetics, Population , Haplotypes , Likelihood Functions , Polymerase Chain Reaction , Rodentia/genetics
10.
Divers Distrib ; 22(6): 638-650, 2016 Jun.
Article in English | MEDLINE | ID: mdl-27453686

ABSTRACT

AIM: Biodiversity losses under the species level may have been severely underestimated in future global climate change scenarios. Therefore, it is important to characterize the diversity units at this level, as well as to understand their ecological responses to climatic forcings. We have chosen an endemic rodent from a highly endangered ecogeographic area as a model to look for distributional responses below the species level: Phyllotis darwini. LOCATION: The central Chile biodiversity hotspot: This area harbours a high number of endemic species, and it is known to have experienced vegetational displacements between two mountain systems during and after the Last Glacial Maximum. METHODS: We have characterized cryptic lineages inside P. darwini in a classic phylogeographic approach; those intraspecific lineages were considered as relevant units to construct distribution models at Last Glacial Maximum and at present, as border climatic conditions. Differences in distribution between border conditions for each lineage were interpreted as distributional responses to post-glacial climate change. RESULTS: The species is composed of two major phylogroups: one of them has a broad distribution mainly across the valley but also in mountain ranges, whereas the other displays a disjunct distribution across both mountain ranges and always above 1500 m. The lineage distribution model under LGM climatic conditions suggests that both lineages were co-distributed in the southern portion of P. darwini's current geographic range, mainly at the valley and at the coast. MAIN CONCLUSIONS: Present distribution of lineages in P. darwini is the consequence of a cryptic distributional response to climate change after LGM: postglacial northward colonization, with strict altitudinal segregation of both phylogroups.

11.
Zootaxa ; 4105(4): 339-52, 2016 Apr 21.
Article in English | MEDLINE | ID: mdl-27394783

ABSTRACT

Only two species of Didelphidae are currently recognized in Chile, the sister species Thylamys elegans, endemic of Mediterranean ecorregion and Thylamys pallidior, the inhabitant of the Puna and desert canyons. Three subspecies have been described for T. elegans: T. e. elegans, T. e. coquimbensis and T. e. soricinus. However, a recent study based on morphological analyses, synonymized T. elegans coquimbensis from the Coquimbo valleys (30-31° S) with T. pallidior and proposed that T. elegans and T. pallidior could be in sympatry at Coquimbo valleys between Fray Jorge (30°40'S) and Paiguano (30°02' S). We assess the current definition of T. e. coquimbensis and T. e. elegans, as well as this taxonomical conflict among the mouse opossums from the Coquimbo valleys through phylogenetic analyses of cytochrome b mitochondrial gene sequences. In this study, for the first time, we used specimens from the type localities of T. e. coquimbensis and T. e. elegans. In addition, we analyzed diagnostic cranial structures for this taxonomic revision. The results supported two allopatric clades, allowing us to keep the taxonomic definition of T. e. elegans and T. e. coquimbensis as phylogenetic reciprocal monophyletic clades and polyphyletic with T. pallidior. This result corroborates previous morphological analyses, which support that mouse opossums from the Coquimbo valleys are T. e. coquimbensis, thus extending its geographic distribution to the coast of Coquimbo and Atacama regions. We don´t have evidence for sympatric distribution between T. elegans and T. pallidior in the Coquimbo region.


Subject(s)
Opossums/classification , Opossums/genetics , Animal Distribution , Animal Structures/anatomy & histology , Animal Structures/growth & development , Animals , Body Size , Chile , Cytochromes b/genetics , Ecosystem , Female , Male , Opossums/anatomy & histology , Opossums/growth & development , Organ Size , Phylogeny
12.
BMC Evol Biol ; 15: 172, 2015 Aug 26.
Article in English | MEDLINE | ID: mdl-26307442

ABSTRACT

BACKGROUND: Much debate has focused on how transitions in life history have influenced the proliferation of some clades. Rodents of the subfamily Sigmodontinae (family Cricetidae) comprise one of the most diverse clades of Neotropical mammals (~400 living species in 86 genera). These rodents occupy a wide range of habitats and lifestyles so that ecological context seems relevant to understand the evolution of this group. Several changes in the landscape of South America through the Neogene might have provided vast resources and opportunity to diversify. The aim of this study was to examine whether transitions between i) lowland and montane habitats, ii) open vegetation and forest, and iii) distinct molar architectures are correlated with shifts in diversification rates and to characterize the general pattern of diversification. RESULTS: Based on a dense taxon sampling of 269 species, we recovered a new phylogeny of Sigmodontinae that is topologically consistent with those of previous studies. It indicates that the subfamily and its major lineages appeared during the Late Miocene. Analyses suggest that vegetation type and elevational range are correlated with diversification rates, but not molar architecture. Tropical lowlands accumulated more lineage diversity than other areas and also supported high speciation rates. Across the radiation the subfamily Sigmodontinae appear to have experienced a decline in diversification rate through time. We detected mixed evidence for lineage-specific diversification rate shifts (e.g., leading to the clades of Akodon, Bibimys, Calomys and Thomasomys). CONCLUSION: We report that the evolution of habitat preference (considering vegetation type and elevational range) was associated with diversification rates among sigmodontine rodents. We propose that the observed diversification slowdown might be the result of ecological or geographical constraints. Our results also highlight the influence of the tropical lowlands -which might have acted as both "a cradle and a museum of species." The tropical lowlands accumulated greater diversity than the remainder of the group's range.


Subject(s)
Rodentia/classification , Rodentia/genetics , Animals , Biodiversity , Ecosystem , Phylogeny , Sigmodontinae/genetics , South America
13.
Emerg Infect Dis ; 20(10): 1629-36, 2014 Oct.
Article in English | MEDLINE | ID: mdl-25272189

ABSTRACT

Andes hantavirus (ANDV) causes hantavirus cardiopulmonary syndrome in Chile and is the only hantavirus for which person-to-person transmission has been proven. We describe an outbreak of 5 human cases of ANDV infection in which symptoms developed in 2 household contacts and 2 health care workers after exposure to the index case-patient. Results of an epidemiologic investigation and sequence analysis of the virus isolates support person-to-person transmission of ANDV for the 4 secondary case-patients, including nosocomial transmission for the 2 health care workers. Health care personnel who have direct contact with ANDV case-patients or their body fluids should take precautions to prevent transmission of the virus. In addition, because the incubation period of ANDV after environmental exposure is longer than that for person-to-person exposure, all persons exposed to a confirmed ANDV case-patient or with possible environmental exposure to the virus should be monitored for 42 days for clinical symptoms.


Subject(s)
Cross Infection/virology , Family Characteristics , Hantavirus Infections/transmission , Health Personnel , Infectious Disease Transmission, Patient-to-Professional , Orthohantavirus/isolation & purification , Adult , Aged , Animals , Chile/epidemiology , Cross Infection/transmission , Disease Outbreaks , Female , Orthohantavirus/classification , Hantavirus Infections/epidemiology , Hantavirus Infections/virology , Humans , Male , Middle Aged
14.
Mol Phylogenet Evol ; 66(3): 960-8, 2013 Mar.
Article in English | MEDLINE | ID: mdl-23257216

ABSTRACT

With about 400 living species and 82 genera, rodents of the subfamily Sigmodontinae comprise one of the most diverse and more broadly distributed Neotropical mammalian clades. There has been much debate on the origin of the lineage or the lineages of sigmodontines that entered South America, the timing of entrance and different aspects of further diversification within South America. The ages of divergence of the main lineages and the crown age of the subfamily were estimated by using sequences of the interphotoreceptor retinoid binding protein and cytochrome b genes for a dense sigmodontine and muroid sampling. Bayesian inference using three fossil calibration points and a relaxed molecular clock estimated a middle Miocene origin for Sigmodontinae (∼12Ma), with most tribes diversifying throughout the Late Miocene (6.9-9.4Ma). These estimates together results of analyses of ancestral area reconstructions suggest a distribution for the most recent common ancestor of Sigmodontinae in Central-South America and a South American distribution for the most recent common ancestor of Oryzomyalia.


Subject(s)
Animal Distribution , Evolution, Molecular , Genetic Speciation , Sigmodontinae/genetics , Animals , Base Sequence , Bayes Theorem , Central America , Cytochromes b/genetics , Eye Proteins/genetics , Models, Genetic , Molecular Sequence Data , Phylogeography , Retinol-Binding Proteins/genetics , Sequence Analysis, DNA , Sigmodontinae/physiology , South America
15.
J Wildl Dis ; 48(2): 267-81, 2012 Apr.
Article in English | MEDLINE | ID: mdl-22493103

ABSTRACT

Thirteen hantavirus genotypes, associated with at least 12 sigmodontine reservoir rodents, have been recognized in the four countries that represent the Southern Cone of South America. Host-virus relationships are not as well defined as in North America; several Southern Cone hantaviruses appear to share a common host and some viruses do not occur throughout the range of their host. Although hantavirus-host relationships in the Southern Cone are less strictly concordant with the single-host-single-virus pattern reported elsewhere, recent studies suggest that much of the ambiguity may result from an incomplete understanding of host and hantavirus systematics. Although some Southern Cone host species are habitat generalists, some sympatric species are habitat specialists, helping to explain how some strict host-virus pairings may be maintained. In some cases, host population densities were higher in peridomestic habitats and prevalence of hantavirus infection was higher in host populations in peridomestic habitats. Seasonal and multiyear patterns in climate and human disturbance affect host population densities, prevalence of infection, and disease risk to humans. Unusually high hantavirus antibody prevalence in indigenous human populations may be associated with frequent and close contact with host rodents. Ongoing studies are improving our understanding of hantavirus-host ecology and providing tools that may predict human risk.


Subject(s)
Disease Reservoirs/veterinary , Ecosystem , Hantavirus Infections/veterinary , Rodent Diseases/epidemiology , Rodent Diseases/virology , Animals , Chile/epidemiology , Female , Genotype , Orthohantavirus/pathogenicity , Hantavirus Infections/epidemiology , Hantavirus Infections/virology , Host-Pathogen Interactions , Humans , Male , Paraguay/epidemiology , Rodentia/virology , Uruguay/epidemiology , Zoonoses
16.
PLoS One ; 7(3): e32206, 2012.
Article in English | MEDLINE | ID: mdl-22396751

ABSTRACT

The long-tailed pygmy rice rat Oligoryzomys longicaudatus (Sigmodontinae), the major reservoir of Hantavirus in Chile and Patagonian Argentina, is widely distributed in the Mediterranean, Temperate and Patagonian Forests of Chile, as well as in adjacent areas in southern Argentina. We used molecular data to evaluate the effects of the last glacial event on the phylogeographic structure of this species. We examined if historical Pleistocene events had affected genetic variation and spatial distribution of this species along its distributional range. We sampled 223 individuals representing 47 localities along the species range, and sequenced the hypervariable domain I of the mtDNA control region. Aligned sequences were analyzed using haplotype network, bayesian population structure and demographic analyses. Analysis of population structure and the haplotype network inferred three genetic clusters along the distribution of O. longicaudatus that mostly agreed with the three major ecogeographic regions in Chile: Mediterranean, Temperate Forests and Patagonian Forests. Bayesian Skyline Plots showed constant population sizes through time in all three clusters followed by an increase after and during the Last Glacial Maximum (LGM; between 26,000-13,000 years ago). Neutrality tests and the "g" parameter also suggest that populations of O. longicaudatus experienced demographic expansion across the species entire range. Past climate shifts have influenced population structure and lineage variation of O. longicaudatus. This species remained in refugia areas during Pleistocene times in southern Temperate Forests (and adjacent areas in Patagonia). From these refugia, O. longicaudatus experienced demographic expansions into Patagonian Forests and central Mediterranean Chile using glacial retreats.


Subject(s)
Sigmodontinae/genetics , Sigmodontinae/physiology , Animals , Argentina , Bayes Theorem , Chile , Cluster Analysis , DNA, Mitochondrial/genetics , Ecology/methods , Evolution, Molecular , Genetic Variation , Geography/methods , Haplotypes , Models, Genetic , Multigene Family , Phylogeny , Phylogeography , Probability , Sequence Analysis, DNA
17.
Mol Ecol ; 20(19): 4109-22, 2011 Oct.
Article in English | MEDLINE | ID: mdl-21880089

ABSTRACT

Co-divergence between host and parasites suggests that evolutionary processes act across similar spatial and temporal scales. Although there has been considerable work on the extent and correlates of co-divergence of RNA viruses and their mammalian hosts, relatively little is known about the extent to which virus evolution is determined by the phylogeographic history of host species. To test hypotheses related to co-divergence across a variety of spatial and temporal scales, we explored phylogenetic signatures in Andes virus (ANDV) sampled from Chile and its host rodent, Oligoryzomys longicaudatus. ANDV showed strong spatial subdivision, a phylogeographic pattern also recovered in the host using both spatial and genealogical approaches, and despite incomplete lineage sorting. Lineage structure in the virus seemed to be a response to current population dynamics in the host at the spatial scale of ecoregions. However, finer scale analyses revealed contrasting patterns of genetic structure across a latitudinal gradient. As predicted by their higher substitution rates, ANDV showed greater genealogical resolution than the rodent, with topological congruence influenced by the degree of lineage sorting within the host. However, despite these major differences in evolutionary dynamics, the geographic structure of host and virus converged across large spatial scales.


Subject(s)
Arvicolinae/virology , Orthohantavirus/genetics , Phylogeny , Animals , Arvicolinae/genetics , Population Dynamics , Selection, Genetic
18.
Infect Genet Evol ; 10(6): 820-25, 2010 Aug.
Article in English | MEDLINE | ID: mdl-19632357

ABSTRACT

Hantavirus cardiopulmonary syndrome (HCPS) is an emerging infectious disease first reported in Chile in 1995. Andes hantavirus (ANDV) is responsible for the more than 500 cases of HCPS reported in Chile. Previous work showed that ANDV is genetically differentiated in Chile across contrasting landscapes. To determine whether the reservoir rodent (Oligoryzomys longicaudatus) populations are also geographically segregated, we conducted range-wide spatial genetic analyses of O. longicaudatus in Chile using the mitochondrial DNA cytochrome b gene. Given that landscape structure influences the incidence of hantavirus infections, we also tested 772 O. longicaudatus specimens for antibodies to ANDV captured during the period 2000-2006. Population genetic analyses of O. longicaudatus are largely congruent with those reported for ANDV, with the host primarily differentiated according to three defined ecoregions, Mediterranean, Valdivian rain forest and North Patagonian rain forest. Significant differences in the relative prevalence of anti-ANDV antibodies in rodent samples also were found across the three ecoregions. We relate these results to the number of reported human HCPS cases in Chile, and discuss the importance of landscape differences in light of ANDV transmission to humans and among rodent populations.


Subject(s)
Disease Reservoirs/statistics & numerical data , Hantavirus Infections/epidemiology , Orthohantavirus/isolation & purification , Rodent Diseases/epidemiology , Animals , Chile/epidemiology , Disease Reservoirs/virology , Geography , Hantavirus Infections/virology , Humans , Phylogeny , Rodent Diseases/virology , Rodentia/virology
19.
J Virol ; 83(6): 2446-59, 2009 Mar.
Article in English | MEDLINE | ID: mdl-19116256

ABSTRACT

Andes virus (ANDV) is the predominant etiologic agent of hantavirus cardiopulmonary syndrome (HCPS) in southern South America. In Chile, serologically confirmed human hantavirus infections have occurred throughout a wide latitudinal distribution extending from the regions of Valparaíso (32 to 33 degrees S) to Aysén (46 degrees S) in southern Patagonia. In this study, we found seropositive rodents further north in the Coquimbo region (30 degrees S) in Chile. Rodent seroprevalence was 1.4%, with Oligoryzomys longicaudatus displaying the highest seroprevalence (5.9%), followed by Abrothrix longipilis (1.9%) and other species exhibiting

Subject(s)
Genetic Variation , Hantavirus Infections/veterinary , Hantavirus Infections/virology , Orthohantavirus/classification , Orthohantavirus/isolation & purification , Phylogeny , Animals , Chile/epidemiology , Female , Geography , Orthohantavirus/genetics , Hantavirus Infections/epidemiology , Humans , Male , Molecular Epidemiology , Molecular Sequence Data , RNA, Viral/genetics , Recombination, Genetic , Rodentia , Sequence Analysis, DNA , Seroepidemiologic Studies
20.
Neotrop. entomol ; 37(6): 651-661, Nov.-Dec. 2008. ilus, mapas, tab
Article in English | LILACS | ID: lil-507021

ABSTRACT

Neotropical Rhagoletis species are arranged in four groups: nova,psalida,striatella and ferruginea, which include 18 species. On both sides of the Andes, the evolution of morphological differences among these groups has been suggested to be related to the Andes uplift process. In order to test this hypothesis, a phylogenetic analysis of morphological and molecular data was performed. The results suggest that: 1) Neotropical species of Rhagoletis constitute a separate group from Paleartic and North American species, with the only exception being a member of the striatella group having a certain association with the northern species. 2) Neotropical species seem to form a monophyletic clade, although statistical support for this is weak. 3) The split of South American Rhagoletis from other groups was dated at 4.333 million years ago, which is before the emergence of a continuous landbridge between Central and South América. 4) Within species distributed in South América, morphological and molecular data were coincident, placing species of the ferruginea group separate from the other Neotropical Rhagoletis. 5) The divergence of the ferruginea group from the other groups was dated at 3.882 million years ago, which is before the last uplift of the Andes. These results suggest that diversification of the ferruginea,psalida and nova groups, on each side of the Andes, was the result of a vicariant separation followed by dispersal and isolation processes. Thus, these results support the hypothesis that the Andes uplift has played an important role in Neotropical Rhagoletis diversification.


Las especies de Rhagoletis neotropicales han sido agrupadas en cuatro grupos: nova,psalida,striatella y ferruginea, constituyendo 18 especies. Se han descrito diferencias morfológicas entre estas especies a ambos lados de la cordillera de los Andes que podrían relacionarse con el proceso de levantamiento cordillerano. En este trabajo se evalúa esta hipótesis usando análisis filogenético de atributos morfológicos y moleculares. Los resultados muestran que: a) las especies Neotropicales de Rhagoletis constituyen un grupo separado de las especies Palearticas y Norteamericanas, con la excepción de un miembro del grupo striatella el cual presenta cierta asociación con las especies Norteamericanas; 2) Las especies Neotropicales parece conformar un clado monofilético; 3) La separación de los grupos Sudamericanos de otros grupos fue estimada en 4.333 millones de años antes del presente, proceso anterior a la emergencia del puente de tierra entre América Central y Sudamérica; 4) Dentro de las especies con distribución Sudamericana, los caracteres morfológicos y moleculares coinciden en ubicar algunas especies del grupo ferruginea separadas de especies de Rhagoletis Neotropicales. 5) La separación del grupo ferruginea fue estimada en 3.882 millones de años antes del presente, evento que precede al último levantamiento de los Andes. La diversificación de los grupos ferruginea,psalida y nova a uno y otro lado de la cordillera de los Andes parece responder inicialmente a un proceso vicariante y posteriores eventos de dispersión y aislamiento. Estos resultados sugieren que el levantamiento de los Andes habría participado en los patrones de diversificación de las Rhagoletis Neotropicales.


Subject(s)
Animals , Tephritidae/anatomy & histology , Tephritidae/genetics , Geography , Phylogeny , South America
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